Wall clock time and date at job start Tue Mar 31 2020 16:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52987 * 109.47351 * 2 1 4 4 N 1.46497 * 109.46979 * 120.00300 * 2 1 3 5 5 C 1.34779 * 120.00488 * 154.99949 * 4 2 1 6 6 O 1.21280 * 119.99367 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00378 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47358 * 59.99515 * 7 5 4 9 9 C 1.53006 * 109.46866 * 299.99920 * 7 5 4 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.46991 * 60.00378 * 10 9 7 12 12 C 1.52996 * 109.47131 * 299.99311 * 11 10 9 13 13 H 1.08996 * 109.47452 * 300.00000 * 12 11 10 14 14 N 1.46507 * 109.47258 * 179.97438 * 12 11 10 15 15 C 1.34778 * 119.99609 * 85.00044 * 14 12 11 16 16 O 1.21282 * 120.00113 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99867 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.47177 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00102 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00027 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00244 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99803 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46601 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46956 * 120.00168 * 23 21 19 26 26 H 1.48493 * 109.46961 * 240.00225 * 23 21 19 27 27 C 1.52997 * 109.47078 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.47267 * 299.99977 * 1 2 3 29 29 H 1.09001 * 109.47274 * 60.00117 * 1 2 3 30 30 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46811 * 239.99233 * 2 1 3 32 32 H 1.08998 * 109.47540 * 299.99989 * 3 2 1 33 33 H 1.09004 * 109.47789 * 59.99832 * 3 2 1 34 34 H 1.08996 * 109.47744 * 179.97438 * 3 2 1 35 35 H 0.97003 * 119.99956 * 334.99161 * 4 2 1 36 36 H 1.08993 * 109.46955 * 300.00219 * 9 7 5 37 37 H 1.09000 * 109.47050 * 60.00048 * 9 7 5 38 38 H 1.09002 * 109.46719 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.47839 * 299.99931 * 10 9 7 40 40 H 1.09001 * 109.47289 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47611 * 59.99933 * 11 10 9 42 42 H 0.97001 * 120.00071 * 265.00501 * 14 12 11 43 43 H 1.08999 * 109.47030 * 300.00073 * 17 15 14 44 44 H 1.08993 * 109.46971 * 59.99841 * 17 15 14 45 45 H 0.96995 * 119.99872 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47153 * 299.99793 * 27 7 5 47 47 H 1.08996 * 109.46952 * 59.99965 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2593 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7427 -1.9693 2.4251 8 1 3.0702 -2.7912 2.6705 9 6 3.7944 -0.9856 3.5959 10 6 4.3040 -1.7066 4.8454 11 6 5.7064 -2.2576 4.5800 12 6 5.6547 -3.2412 3.4092 13 1 4.9819 -4.0630 3.6544 14 7 6.9977 -3.7684 3.1546 15 6 7.4502 -4.8269 3.8557 16 8 6.7454 -5.3431 4.6969 17 6 8.8319 -5.3688 3.5942 18 16 9.1430 -6.7794 4.6849 19 6 10.7772 -7.2021 4.1797 20 1 11.2680 -6.6308 3.4057 21 6 11.4344 -8.2687 4.7774 22 7 10.8365 -8.9647 5.7212 23 14 13.1672 -8.7164 4.2423 24 1 13.6110 -7.7860 3.1734 25 1 14.0867 -8.6102 5.4035 26 1 13.1815 -10.1083 3.7252 27 6 5.1455 -2.5193 2.1595 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.4622 -0.7387 1.9895 36 1 4.4669 -0.1637 3.3505 37 1 2.7952 -0.5934 3.7853 38 1 4.3404 -1.0060 5.6797 39 1 3.6312 -2.5283 5.0907 40 1 6.0697 -2.7709 5.4703 41 1 6.3793 -1.4359 4.3349 42 1 7.5613 -3.3556 2.4816 43 1 8.9055 -5.6901 2.5553 44 1 9.5700 -4.5903 3.7869 45 1 11.2955 -9.7102 6.1386 46 1 5.1091 -3.2199 1.3252 47 1 5.8177 -1.6971 1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116058097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:21 Heat of formation + Delta-G solvation = -133.814479 kcal Electronic energy + Delta-G solvation = -25414.579349 eV Core-core repulsion = 21720.960376 eV Total energy + Delta-G solvation = -3693.618973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.50186 -40.62501 -38.67689 -36.91279 -35.26534 -34.59017 -32.89355 -31.74076 -31.40337 -29.33798 -28.08377 -27.65317 -25.08117 -23.50410 -22.37288 -21.71070 -21.41434 -20.74881 -19.78701 -18.38994 -17.81834 -17.29038 -16.89606 -16.83678 -16.42520 -16.26667 -15.91773 -15.68400 -15.23300 -15.09782 -14.77454 -14.65522 -14.54826 -14.18414 -13.96864 -13.72258 -13.43573 -13.33044 -13.16556 -13.06296 -13.04092 -12.91652 -12.60570 -12.39096 -12.28814 -12.21671 -11.91978 -11.76307 -11.66799 -11.63856 -11.49633 -11.16388 -10.90751 -10.68761 -10.28391 -10.09024 -10.05212 -8.66911 -8.35543 -6.13313 1.26403 1.40735 1.46199 1.57829 1.61668 1.64403 2.11875 2.26387 2.37871 2.98538 3.30981 3.52774 3.71731 3.77673 3.89452 3.97792 4.08241 4.14789 4.20170 4.29066 4.32379 4.34239 4.38512 4.44208 4.46596 4.50469 4.64452 4.75454 4.77685 4.94096 4.94577 5.03730 5.05404 5.10167 5.11695 5.25027 5.27729 5.30731 5.33566 5.41233 5.41750 5.56139 5.59260 6.19485 6.50938 6.58895 7.05921 7.24842 7.29153 8.73975 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.001936 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.259438 B =14458.400833 C =14896.871488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.583 6.583 7 C -0.098 4.098 8 H 0.116 0.884 9 C -0.100 4.100 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.149 3.851 13 H 0.070 0.930 14 N -0.713 5.713 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.096 4.096 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.415 0.585 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.413 0.587 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.730 24.007 -9.512 33.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.463 6.463 7 C -0.120 4.120 8 H 0.133 0.867 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.169 4.169 12 C 0.044 3.956 13 H 0.089 0.911 14 N -0.366 5.366 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.283 4.283 18 S 0.080 5.920 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.134 4.134 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.252 0.748 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.249 0.751 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.436 23.084 -8.730 33.354 hybrid contribution 2.043 -0.033 -1.053 2.298 sum -20.394 23.051 -9.783 32.295 Atomic orbital electron populations 1.22027 0.91811 1.03067 1.04156 1.20998 0.95657 0.92797 0.87940 1.22134 1.00437 0.95821 1.03304 1.46066 1.17235 1.55868 1.17464 1.20865 0.81439 0.77863 0.89151 1.90697 1.57551 1.61231 1.36782 1.21273 0.97509 0.99825 0.93397 0.86659 1.21531 1.03409 0.96740 0.92117 1.21455 0.94673 1.00519 0.98048 1.21937 0.99312 0.98437 0.97242 1.21006 0.83044 0.95976 0.95540 0.91133 1.45885 1.17867 1.31782 1.41042 1.20006 0.87544 0.79717 0.80509 1.90676 1.58666 1.60007 1.34626 1.23394 0.97239 1.02542 1.05129 1.85511 1.20345 1.35225 1.50934 1.23244 1.00731 1.19593 1.25948 0.90058 1.26125 1.03697 0.94883 0.94426 1.70186 1.39610 1.19669 1.25242 0.84902 0.76219 0.78327 0.78476 1.18180 1.19811 1.19865 1.21469 0.96083 1.00145 0.95724 0.90432 0.90141 0.91968 0.92031 0.90650 0.91042 0.94651 0.74758 0.91402 0.88417 0.89830 0.91179 0.93854 0.90938 0.75053 0.87511 0.87365 0.91959 0.91814 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.38 71.98 0.68 -0.08 16 2 C 0.13 1.40 3.18 44.99 0.14 1.55 16 3 C -0.16 -1.64 9.48 71.98 0.68 -0.96 16 4 N -0.71 -7.40 4.97 -442.56 -2.20 -9.60 16 5 C 0.52 8.82 7.12 87.66 0.62 9.44 16 6 O -0.58 -15.29 15.64 -3.03 -0.05 -15.34 16 7 C -0.10 -1.35 2.53 -11.54 -0.03 -1.38 16 8 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 9 C -0.10 -0.99 5.10 30.60 0.16 -0.83 16 10 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 11 C -0.13 -2.69 5.49 30.59 0.17 -2.53 16 12 C 0.15 3.44 2.46 45.01 0.11 3.55 16 13 H 0.07 1.92 7.58 -2.39 -0.02 1.91 16 14 N -0.71 -19.25 5.08 -442.44 -2.25 -21.49 16 15 C 0.54 20.34 7.81 87.66 0.68 21.03 16 16 O -0.56 -26.15 15.53 -3.04 -0.05 -26.20 16 17 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 18 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 19 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 23 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C -0.10 -1.81 3.96 30.61 0.12 -1.69 16 28 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 1.00 7.58 -2.38 -0.02 0.98 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 35 H 0.42 1.70 8.02 -92.71 -0.74 0.95 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.42 7.56 -2.39 -0.02 0.41 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.41 8.78 8.60 -92.71 -0.80 7.98 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 47 H 0.08 1.45 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -82.22 395.12 1.10 -81.12 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.58 Total: 18.92 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.07 Total: -8.06 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.16 Total: -87.22 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.09 Total: -41.54 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -82.22 1.10 -81.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.697 kcal (2) G-P(sol) polarization free energy of solvation -82.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds