Wall clock time and date at job start Tue Mar 31 2020 16:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.34773 * 119.99969 * 154.71955 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 9 9 C 1.53004 * 109.46763 * 60.00061 * 7 5 4 10 10 C 1.52997 * 109.46544 * 180.02562 * 9 7 5 11 11 C 1.52995 * 109.47586 * 299.99903 * 10 9 7 12 12 C 1.53008 * 109.46927 * 60.00112 * 11 10 9 13 13 H 1.09004 * 109.47049 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46807 * 60.00355 * 12 11 10 15 15 C 1.34776 * 120.00101 * 84.99712 * 14 12 11 16 16 O 1.21285 * 119.99944 * 0.02562 * 15 14 12 17 17 C 1.50698 * 119.99974 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47024 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99884 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00174 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99963 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46914 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47008 * 119.99894 * 23 21 19 26 26 H 1.48497 * 109.47386 * 240.00088 * 23 21 19 27 27 C 1.52992 * 109.47274 * 180.02562 * 7 5 4 28 28 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 29 29 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 30 30 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 32 32 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 34 34 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 35 35 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 36 36 H 1.09000 * 109.47019 * 299.99778 * 9 7 5 37 37 H 1.08995 * 109.46910 * 60.00609 * 9 7 5 38 38 H 1.09006 * 109.46550 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.47666 * 60.00591 * 10 9 7 40 40 H 1.09007 * 109.47025 * 300.00709 * 11 10 9 41 41 H 1.09002 * 109.47485 * 180.02562 * 11 10 9 42 42 H 0.96995 * 120.00045 * 264.99883 * 14 12 11 43 43 H 1.08999 * 109.47429 * 300.00370 * 17 15 14 44 44 H 1.09001 * 109.46771 * 60.00708 * 17 15 14 45 45 H 0.97007 * 119.99718 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.47116 * 299.99649 * 27 7 5 47 47 H 1.08993 * 109.47352 * 59.99893 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2379 -1.2640 1.1926 6 8 3.9314 -1.2080 0.1992 7 6 3.7401 -1.9749 2.4229 8 1 3.7812 -1.2736 3.2564 9 6 2.7921 -3.1246 2.7702 10 6 3.3015 -3.8458 4.0196 11 6 4.7015 -4.4022 3.7522 12 6 5.6494 -3.2525 3.4049 13 1 6.6469 -3.6488 3.2148 14 7 5.7043 -2.3096 4.5249 15 6 6.5526 -2.5285 5.5490 16 8 7.2709 -3.5058 5.5433 17 6 6.6095 -1.5583 6.7008 18 16 7.8359 -2.1238 7.9059 19 6 7.6964 -0.8433 9.1082 20 1 6.9969 -0.0345 8.9571 21 6 8.4857 -0.8740 10.2495 22 7 9.3387 -1.8595 10.4335 23 14 8.3383 0.4839 11.5238 24 1 7.3158 1.4668 11.0837 25 1 7.9327 -0.1018 12.8267 26 1 9.6488 1.1660 11.6742 27 6 5.1401 -2.5307 2.1551 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.4621 -0.7386 1.9896 36 1 1.7948 -2.7282 2.9612 37 1 2.7510 -3.8258 1.9368 38 1 2.6259 -4.6647 4.2672 39 1 3.3424 -3.1444 4.8529 40 1 4.6606 -5.1037 2.9189 41 1 5.0642 -4.9164 4.6422 42 1 5.1301 -1.5279 4.5293 43 1 6.8912 -0.5722 6.3317 44 1 5.6307 -1.5021 7.1771 45 1 9.8900 -1.8811 11.2314 46 1 5.0992 -3.2320 1.3216 47 1 5.8151 -1.7115 1.9080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116058099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:29 Heat of formation + Delta-G solvation = -104.934931 kcal Electronic energy + Delta-G solvation = -25871.997968 eV Core-core repulsion = 22179.631307 eV Total energy + Delta-G solvation = -3692.366662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81010 -39.47165 -37.64503 -36.26394 -33.69849 -32.42648 -32.15972 -30.92399 -30.39445 -28.26734 -27.67879 -25.47891 -24.32701 -22.76853 -21.66610 -21.01822 -20.66498 -19.13757 -18.03127 -17.40727 -16.65965 -16.17544 -15.96870 -15.61777 -15.08481 -15.01883 -14.80505 -14.56846 -14.32232 -14.03755 -13.99347 -13.36744 -13.21897 -12.92751 -12.84107 -12.76310 -12.71935 -12.57566 -12.25908 -12.22695 -11.92566 -11.84099 -11.54645 -11.41131 -11.07378 -11.01801 -10.98771 -10.75214 -10.70763 -10.45189 -9.91218 -9.79683 -9.46458 -9.34907 -9.07565 -8.83289 -8.22178 -6.49173 -6.21649 -3.91783 2.34822 2.79371 3.06103 3.13370 3.21353 3.28464 3.33327 3.74838 4.20217 4.20803 4.34143 4.43799 4.45070 4.60120 4.78179 4.87050 4.91395 4.98072 5.03662 5.11220 5.13587 5.17612 5.22643 5.25061 5.32558 5.34856 5.42852 5.46823 5.60141 5.66027 5.67891 5.71619 5.82635 5.86405 5.89139 5.98231 6.05866 6.11589 6.14516 6.15429 6.20664 6.72059 7.14161 7.59906 7.74348 7.92066 8.35477 8.65701 9.23836 10.85783 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002394 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.809366 B =11694.448043 C =12696.009561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.729 5.729 5 C 0.520 3.480 6 O -0.537 6.537 7 C -0.108 4.108 8 H 0.096 0.904 9 C -0.108 4.108 10 C -0.116 4.116 11 C -0.133 4.133 12 C 0.148 3.852 13 H 0.092 0.908 14 N -0.732 5.732 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.393 0.607 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.084 0.916 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 2.151 -20.156 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.223 4.223 4 N -0.381 5.381 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.130 4.130 8 H 0.114 0.886 9 C -0.146 4.146 10 C -0.154 4.154 11 C -0.172 4.172 12 C 0.043 3.957 13 H 0.110 0.890 14 N -0.387 5.387 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.228 0.772 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.760 0.480 -20.794 28.010 hybrid contribution -1.537 2.480 1.273 3.183 sum -20.297 2.960 -19.521 28.316 Atomic orbital electron populations 1.22079 0.94140 1.02631 1.02996 1.20934 0.93930 0.93116 0.88979 1.22189 1.02248 0.95738 1.02104 1.46170 1.18279 1.56899 1.16779 1.20718 0.81008 0.77923 0.89718 1.90707 1.56016 1.59582 1.34997 1.21382 0.97474 0.98083 0.96036 0.88616 1.21543 0.97402 0.96454 0.99162 1.21488 0.96651 1.00182 0.97084 1.21953 0.94803 0.97737 1.02678 1.20902 1.00191 0.89489 0.85164 0.88972 1.46136 1.43043 1.27853 1.21707 1.20288 0.78861 0.86345 0.82648 1.90699 1.41077 1.29300 1.78002 1.23536 1.06548 1.01281 0.99096 1.85405 1.46624 1.34662 1.16656 1.22904 1.27156 1.10989 1.07222 0.90934 1.24997 0.94522 0.96566 0.97569 1.70032 1.22308 1.30493 1.27428 0.86120 0.78130 0.80837 0.80415 1.19645 1.20584 1.20571 1.21644 0.93995 1.01250 0.97386 0.92005 0.90940 0.91968 0.89508 0.92003 0.91682 0.92419 0.76594 0.91644 0.91249 0.91531 0.91401 0.91179 0.90740 0.77205 0.89350 0.89373 0.92251 0.89733 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.38 37.15 0.35 -0.28 16 2 C 0.13 0.86 3.19 -67.93 -0.22 0.64 16 3 C -0.16 -1.07 9.49 37.16 0.35 -0.72 16 4 N -0.73 -4.70 4.97 -53.81 -0.27 -4.96 16 5 C 0.52 4.77 7.12 -10.98 -0.08 4.69 16 6 O -0.54 -7.04 15.64 5.56 0.09 -6.96 16 7 C -0.11 -0.84 2.35 -91.77 -0.22 -1.05 16 8 H 0.10 0.65 6.50 -51.93 -0.34 0.31 16 9 C -0.11 -0.71 5.10 -26.73 -0.14 -0.84 16 10 C -0.12 -0.95 5.76 -26.74 -0.15 -1.11 16 11 C -0.13 -1.39 5.60 -26.73 -0.15 -1.54 16 12 C 0.15 1.70 2.79 -67.90 -0.19 1.51 16 13 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 14 N -0.73 -9.37 4.23 -53.78 -0.23 -9.59 16 15 C 0.53 9.67 7.81 -10.99 -0.09 9.59 16 16 O -0.52 -11.50 15.52 5.55 0.09 -11.41 16 17 C -0.15 -3.06 6.16 36.00 0.22 -2.83 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.10 -1.01 4.18 -26.71 -0.11 -1.13 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.71 7.57 -51.93 -0.39 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 1.64 8.01 -40.82 -0.33 1.31 16 36 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.60 7.60 -51.93 -0.39 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.39 3.98 6.87 -40.82 -0.28 3.70 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 47 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -35.69 390.67 -9.13 -44.82 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.98 Total: 1.10 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.22 Total: -5.98 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.24 Total: -39.96 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.69 -9.13 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.110 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds