Wall clock time and date at job start Tue Mar 31 2020 16:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.34773 * 119.99969 * 154.71955 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 9 9 C 1.53004 * 109.46763 * 60.00061 * 7 5 4 10 10 C 1.52997 * 109.46544 * 180.02562 * 9 7 5 11 11 C 1.52995 * 109.47586 * 299.99903 * 10 9 7 12 12 C 1.53008 * 109.46927 * 60.00112 * 11 10 9 13 13 H 1.09004 * 109.47049 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46807 * 60.00355 * 12 11 10 15 15 C 1.34776 * 120.00101 * 84.99712 * 14 12 11 16 16 O 1.21285 * 119.99944 * 0.02562 * 15 14 12 17 17 C 1.50698 * 119.99974 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47024 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99884 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00174 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99963 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46914 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47008 * 119.99894 * 23 21 19 26 26 H 1.48497 * 109.47386 * 240.00088 * 23 21 19 27 27 C 1.52992 * 109.47274 * 180.02562 * 7 5 4 28 28 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 29 29 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 30 30 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 32 32 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 34 34 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 35 35 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 36 36 H 1.09000 * 109.47019 * 299.99778 * 9 7 5 37 37 H 1.08995 * 109.46910 * 60.00609 * 9 7 5 38 38 H 1.09006 * 109.46550 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.47666 * 60.00591 * 10 9 7 40 40 H 1.09007 * 109.47025 * 300.00709 * 11 10 9 41 41 H 1.09002 * 109.47485 * 180.02562 * 11 10 9 42 42 H 0.96995 * 120.00045 * 264.99883 * 14 12 11 43 43 H 1.08999 * 109.47429 * 300.00370 * 17 15 14 44 44 H 1.09001 * 109.46771 * 60.00708 * 17 15 14 45 45 H 0.97007 * 119.99718 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.47116 * 299.99649 * 27 7 5 47 47 H 1.08993 * 109.47352 * 59.99893 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2379 -1.2640 1.1926 6 8 3.9314 -1.2080 0.1992 7 6 3.7401 -1.9749 2.4229 8 1 3.7812 -1.2736 3.2564 9 6 2.7921 -3.1246 2.7702 10 6 3.3015 -3.8458 4.0196 11 6 4.7015 -4.4022 3.7522 12 6 5.6494 -3.2525 3.4049 13 1 6.6469 -3.6488 3.2148 14 7 5.7043 -2.3096 4.5249 15 6 6.5526 -2.5285 5.5490 16 8 7.2709 -3.5058 5.5433 17 6 6.6095 -1.5583 6.7008 18 16 7.8359 -2.1238 7.9059 19 6 7.6964 -0.8433 9.1082 20 1 6.9969 -0.0345 8.9571 21 6 8.4857 -0.8740 10.2495 22 7 9.3387 -1.8595 10.4335 23 14 8.3383 0.4839 11.5238 24 1 7.3158 1.4668 11.0837 25 1 7.9327 -0.1018 12.8267 26 1 9.6488 1.1660 11.6742 27 6 5.1401 -2.5307 2.1551 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.4621 -0.7386 1.9896 36 1 1.7948 -2.7282 2.9612 37 1 2.7510 -3.8258 1.9368 38 1 2.6259 -4.6647 4.2672 39 1 3.3424 -3.1444 4.8529 40 1 4.6606 -5.1037 2.9189 41 1 5.0642 -4.9164 4.6422 42 1 5.1301 -1.5279 4.5293 43 1 6.8912 -0.5722 6.3317 44 1 5.6307 -1.5021 7.1771 45 1 9.8900 -1.8811 11.2314 46 1 5.0992 -3.2320 1.3216 47 1 5.8151 -1.7115 1.9080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116058099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:27 Heat of formation + Delta-G solvation = -129.740459 kcal Electronic energy + Delta-G solvation = -25873.073617 eV Core-core repulsion = 22179.631307 eV Total energy + Delta-G solvation = -3693.442310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65600 -40.58915 -38.69634 -36.91117 -34.82433 -34.56956 -32.91602 -31.77563 -31.39226 -29.55822 -28.08774 -27.64190 -25.04282 -23.56372 -22.43834 -22.06077 -21.38599 -20.09793 -19.88342 -18.42840 -17.57724 -17.26970 -16.95546 -16.86984 -16.64366 -16.28133 -15.82901 -15.69329 -15.17902 -15.12366 -14.87853 -14.65484 -14.52332 -13.95292 -13.70700 -13.59360 -13.42054 -13.25162 -13.18242 -13.14784 -13.06069 -12.92942 -12.90866 -12.56801 -12.36433 -12.26444 -11.90801 -11.78572 -11.69274 -11.45186 -11.24614 -11.15118 -10.89542 -10.67363 -10.25152 -10.08107 -10.03945 -8.65185 -8.33919 -6.11518 1.28349 1.41949 1.48366 1.59029 1.64938 1.65742 2.20802 2.27049 2.33044 3.00326 3.33576 3.51597 3.67298 3.76754 3.92649 3.98235 4.08400 4.14272 4.20758 4.25927 4.31657 4.34147 4.37886 4.46287 4.52340 4.65053 4.67134 4.74573 4.77172 4.85685 4.95065 5.04517 5.06945 5.09372 5.14003 5.27812 5.28484 5.32654 5.33396 5.39617 5.43052 5.58591 5.60024 6.20935 6.53320 6.59562 7.07574 7.28906 7.29832 8.75463 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002394 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.809366 B =11694.448043 C =12696.009561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.714 5.714 5 C 0.519 3.481 6 O -0.583 6.583 7 C -0.102 4.102 8 H 0.113 0.887 9 C -0.099 4.099 10 C -0.111 4.111 11 C -0.131 4.131 12 C 0.149 3.851 13 H 0.065 0.935 14 N -0.705 5.705 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.415 0.585 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.411 0.589 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.039 4.094 -20.205 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.463 6.463 7 C -0.124 4.124 8 H 0.130 0.870 9 C -0.137 4.137 10 C -0.149 4.149 11 C -0.170 4.170 12 C 0.045 3.955 13 H 0.083 0.917 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.691 4.691 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.133 4.133 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.249 0.751 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.272 2.454 -20.861 30.615 hybrid contribution -0.526 1.858 1.142 2.243 sum -22.798 4.312 -19.719 30.450 Atomic orbital electron populations 1.22023 0.91748 1.03217 1.04040 1.20986 0.95684 0.92555 0.88046 1.22161 1.00389 0.96180 1.03232 1.46081 1.17461 1.55634 1.17454 1.20888 0.81369 0.77766 0.89317 1.90700 1.57433 1.61465 1.36655 1.21351 0.96255 0.98818 0.95955 0.86954 1.21514 0.98281 0.95705 0.98186 1.21459 0.95031 1.00623 0.97785 1.21916 0.95999 0.97260 1.01785 1.20956 0.99491 0.89848 0.85228 0.91678 1.45860 1.41411 1.28359 1.20326 1.20046 0.79222 0.85384 0.83240 1.90692 1.43367 1.31156 1.79057 1.23377 1.04948 1.02031 0.97714 1.85609 1.50559 1.36569 1.19803 1.23230 1.27403 1.11024 1.07478 0.89882 1.26142 0.93886 0.99264 1.00025 1.70198 1.23441 1.32848 1.28350 0.84899 0.78534 0.77405 0.77060 1.17925 1.19922 1.20094 1.21502 0.95225 1.00593 0.96000 0.90694 0.90188 0.91601 0.91735 0.94780 0.90585 0.91316 0.74796 0.88654 0.91213 0.90340 0.91632 0.89824 0.93822 0.75109 0.87500 0.87008 0.92050 0.89774 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.38 71.98 0.68 -0.07 16 2 C 0.13 1.43 3.19 44.99 0.14 1.58 16 3 C -0.16 -1.87 9.49 71.98 0.68 -1.19 16 4 N -0.71 -7.37 4.97 -442.54 -2.20 -9.56 16 5 C 0.52 8.62 7.12 87.66 0.62 9.24 16 6 O -0.58 -15.13 15.64 -3.03 -0.05 -15.18 16 7 C -0.10 -1.34 2.35 -11.54 -0.03 -1.36 16 8 H 0.11 1.11 6.50 -2.39 -0.02 1.09 16 9 C -0.10 -0.96 5.10 30.59 0.16 -0.80 16 10 C -0.11 -1.53 5.76 30.59 0.18 -1.35 16 11 C -0.13 -2.64 5.60 30.60 0.17 -2.47 16 12 C 0.15 3.39 2.79 45.01 0.13 3.52 16 13 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 14 N -0.70 -17.26 4.23 -442.44 -1.87 -19.13 16 15 C 0.54 19.42 7.81 87.66 0.68 20.11 16 16 O -0.56 -26.07 15.52 -3.05 -0.05 -26.11 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.54 -30.86 9.50 67.95 0.65 -30.22 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.65 5.49 84.86 0.47 1.11 16 22 N -0.91 -56.08 13.22 21.65 0.29 -55.80 16 23 Si 1.00 43.43 29.55 68.60 2.03 45.45 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 27 C -0.09 -1.76 4.18 30.61 0.13 -1.63 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 1.02 7.57 -2.39 -0.02 1.00 16 32 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.41 1.77 8.01 -92.70 -0.74 1.03 16 36 H 0.09 0.43 7.56 -2.39 -0.02 0.41 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.06 0.95 7.60 -2.39 -0.02 0.93 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.41 7.24 6.87 -92.71 -0.64 6.61 16 43 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 44 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 46 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 47 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -81.86 390.67 1.66 -80.20 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.41 Total: 17.87 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.09 Total: -8.13 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.79 Total: -84.49 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.09 Total: -41.29 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -81.86 1.66 -80.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.544 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds