Wall clock time and date at job start Tue Mar 31 2020 16:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47257 * 119.99988 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 9 9 C 1.53007 * 109.47063 * 300.00464 * 7 5 4 10 10 C 1.52995 * 109.46927 * 179.97438 * 9 7 5 11 11 C 1.52990 * 109.47353 * 59.99689 * 10 9 7 12 12 C 1.52999 * 109.47464 * 300.00249 * 11 10 9 13 13 H 1.09001 * 109.47411 * 180.02562 * 12 11 10 14 14 N 1.46504 * 109.46800 * 299.99797 * 12 11 10 15 15 C 1.34780 * 119.99730 * 275.00041 * 14 12 11 16 16 O 1.21275 * 120.00531 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99634 * 179.97438 * 15 14 12 18 18 S 1.80997 * 109.46980 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00183 * 180.02562 * 18 17 15 20 20 H 1.08010 * 120.00045 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00511 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99756 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00455 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46807 * 59.99616 * 23 21 19 25 25 H 1.48493 * 109.47266 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47153 * 300.00007 * 23 21 19 27 27 C 1.52990 * 109.47398 * 180.02562 * 7 5 4 28 28 H 1.08995 * 109.47098 * 300.00077 * 1 2 3 29 29 H 1.09003 * 109.47054 * 59.99725 * 1 2 3 30 30 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47098 * 239.99923 * 2 1 3 32 32 H 1.08998 * 109.46617 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47168 * 299.99945 * 3 2 1 34 34 H 1.08994 * 109.46839 * 60.00381 * 3 2 1 35 35 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 36 36 H 1.09003 * 109.46582 * 300.00001 * 9 7 5 37 37 H 1.09001 * 109.46852 * 59.99630 * 9 7 5 38 38 H 1.08998 * 109.46818 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47128 * 299.99281 * 10 9 7 40 40 H 1.09005 * 109.46920 * 60.00358 * 11 10 9 41 41 H 1.09007 * 109.47253 * 179.97438 * 11 10 9 42 42 H 0.96996 * 120.00413 * 94.99949 * 14 12 11 43 43 H 1.08991 * 109.47400 * 300.00300 * 17 15 14 44 44 H 1.09003 * 109.46909 * 60.00328 * 17 15 14 45 45 H 0.97001 * 120.00050 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47508 * 300.00200 * 27 7 5 47 47 H 1.09011 * 109.47182 * 60.00188 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1417 -2.0327 1.1962 6 8 1.8533 -2.6683 0.2043 7 6 2.6382 -2.7438 2.4287 8 1 1.9643 -2.5412 3.2612 9 6 4.0419 -2.2434 2.7756 10 6 4.5456 -2.9649 4.0272 11 6 4.5916 -4.4712 3.7638 12 6 3.1880 -4.9715 3.4170 13 1 3.2207 -6.0449 3.2298 14 7 2.2821 -4.6989 4.5356 15 6 2.1981 -5.5683 5.5620 16 8 2.8727 -6.5762 5.5599 17 6 1.2667 -5.2875 6.7130 18 16 1.3794 -6.6301 7.9216 19 6 0.2222 -6.0596 9.1216 20 1 -0.3002 -5.1269 8.9673 21 6 -0.0181 -6.8085 10.2652 22 7 0.6182 -7.9454 10.4530 23 14 -1.2443 -6.2032 11.5377 24 1 -2.5832 -6.0678 10.9096 25 1 -1.3189 -7.1775 12.6559 26 1 -0.8062 -4.8835 12.0588 27 6 2.6849 -4.2500 2.1646 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1823 1.9895 36 1 4.7157 -2.4459 1.9430 37 1 4.0089 -1.1703 2.9636 38 1 5.5454 -2.6081 4.2745 39 1 3.8717 -2.7619 4.8595 40 1 5.2657 -4.6741 2.9316 41 1 4.9510 -4.9852 4.6555 42 1 1.7428 -3.8927 4.5376 43 1 1.5479 -4.3471 7.1868 44 1 0.2437 -5.2167 6.3436 45 1 0.4500 -8.4691 11.2520 46 1 1.6851 -4.6067 1.9172 47 1 3.3591 -4.4521 1.3321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116058101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:36 Heat of formation + Delta-G solvation = -104.833943 kcal Electronic energy + Delta-G solvation = -25872.846946 eV Core-core repulsion = 22180.484664 eV Total energy + Delta-G solvation = -3692.362283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.81021 -39.47222 -37.64665 -36.26326 -33.69838 -32.42448 -32.15910 -30.92275 -30.39408 -28.26729 -27.67894 -25.47382 -24.32655 -22.76706 -21.66670 -21.01808 -20.66390 -19.13821 -18.02946 -17.40526 -16.65904 -16.17496 -15.96997 -15.61615 -15.08484 -15.01833 -14.80161 -14.57032 -14.32103 -14.03370 -13.99249 -13.36515 -13.21936 -12.92766 -12.84066 -12.76053 -12.71839 -12.57528 -12.25807 -12.22642 -11.92584 -11.84118 -11.54706 -11.41193 -11.04321 -11.03965 -10.98544 -10.76191 -10.70702 -10.45154 -9.91319 -9.81330 -9.46312 -9.34892 -9.05879 -8.83254 -8.22889 -6.49049 -6.21036 -3.91461 2.34823 2.79408 3.06083 3.13433 3.23358 3.27777 3.31941 3.74790 4.20438 4.21157 4.34202 4.43815 4.45145 4.60088 4.78229 4.87161 4.91433 4.98194 5.03685 5.11244 5.13919 5.17635 5.22623 5.25054 5.32591 5.34929 5.42921 5.46911 5.60209 5.66085 5.67996 5.71678 5.82680 5.86460 5.89170 5.98256 6.05918 6.11631 6.14546 6.15466 6.20714 6.72081 7.14178 7.59453 7.74357 7.92090 8.35293 8.65714 9.24065 10.86289 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002395 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.898154 B =11688.497390 C =12691.716686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.729 5.729 5 C 0.520 3.480 6 O -0.537 6.537 7 C -0.108 4.108 8 H 0.096 0.904 9 C -0.108 4.108 10 C -0.116 4.116 11 C -0.133 4.133 12 C 0.148 3.852 13 H 0.092 0.908 14 N -0.732 5.732 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.104 4.104 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.393 0.607 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.077 0.923 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 20.031 -20.186 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.381 5.381 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.130 4.130 8 H 0.114 0.886 9 C -0.146 4.146 10 C -0.154 4.154 11 C -0.172 4.172 12 C 0.043 3.957 13 H 0.110 0.890 14 N -0.387 5.387 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.228 0.772 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.941 17.713 -20.813 27.968 hybrid contribution -1.823 2.311 1.261 3.203 sum 4.118 20.025 -19.552 28.288 Atomic orbital electron populations 1.22192 0.95240 1.02767 1.02107 1.20933 0.94236 0.92802 0.88978 1.22077 1.01705 0.95058 1.02992 1.46169 1.68022 1.07149 1.16786 1.20718 0.76850 0.82071 0.89728 1.90708 1.49509 1.65927 1.35154 1.21382 0.98736 0.96852 0.96004 0.88616 1.21545 0.94269 0.99598 0.99150 1.21485 1.01520 0.95327 0.97070 1.21952 0.96791 0.95747 1.02687 1.20898 0.88963 1.00704 0.85179 0.88973 1.46136 1.45330 1.25614 1.21660 1.20287 0.82516 0.82698 0.82634 1.90696 1.43853 1.26488 1.78033 1.23537 1.00845 1.06979 0.99116 1.85396 1.56768 1.24577 1.16522 1.22825 1.27925 1.10439 1.07238 0.91038 1.24988 0.96443 0.94628 0.97527 1.70007 1.40259 1.12550 1.27455 0.86232 0.80762 0.78552 0.79995 1.19959 1.20814 1.19964 1.21645 1.03447 0.91814 0.97369 0.92423 0.91678 0.91994 0.89517 0.91964 0.90939 0.92007 0.76596 0.91249 0.91644 0.91531 0.91403 0.91179 0.90743 0.77207 0.89372 0.89358 0.92136 0.90447 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.48 37.16 0.35 -0.72 16 2 C 0.13 0.86 3.18 -67.93 -0.22 0.64 16 3 C -0.16 -0.63 9.38 37.16 0.35 -0.28 16 4 N -0.73 -4.69 4.97 -53.81 -0.27 -4.96 16 5 C 0.52 4.77 7.12 -10.98 -0.08 4.69 16 6 O -0.54 -7.04 15.65 5.55 0.09 -6.95 16 7 C -0.11 -0.84 2.35 -91.77 -0.22 -1.05 16 8 H 0.10 0.64 6.50 -51.93 -0.34 0.31 16 9 C -0.11 -0.71 5.10 -26.73 -0.14 -0.84 16 10 C -0.12 -0.95 5.76 -26.74 -0.15 -1.11 16 11 C -0.13 -1.39 5.60 -26.74 -0.15 -1.54 16 12 C 0.15 1.70 2.78 -67.91 -0.19 1.51 16 13 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 14 N -0.73 -9.37 4.23 -53.78 -0.23 -9.59 16 15 C 0.53 9.67 7.81 -10.98 -0.09 9.59 16 16 O -0.52 -11.49 15.52 5.56 0.09 -11.41 16 17 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 20 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.10 -1.01 4.18 -26.71 -0.11 -1.13 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.71 7.58 -51.93 -0.39 0.31 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.40 1.64 8.02 -40.82 -0.33 1.31 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.60 7.60 -51.93 -0.39 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.39 3.98 6.87 -40.82 -0.28 3.70 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 47 H 0.08 0.83 8.10 -51.92 -0.42 0.41 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -35.65 390.69 -9.13 -44.78 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.98 Total: 1.17 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.22 Total: -6.01 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.24 Total: -39.97 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.65 -9.13 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.056 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds