Wall clock time and date at job start Tue Mar 31 2020 16:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47257 * 119.99988 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 9 9 C 1.53007 * 109.47063 * 300.00464 * 7 5 4 10 10 C 1.52995 * 109.46927 * 179.97438 * 9 7 5 11 11 C 1.52990 * 109.47353 * 59.99689 * 10 9 7 12 12 C 1.52999 * 109.47464 * 300.00249 * 11 10 9 13 13 H 1.09001 * 109.47411 * 180.02562 * 12 11 10 14 14 N 1.46504 * 109.46800 * 299.99797 * 12 11 10 15 15 C 1.34780 * 119.99730 * 275.00041 * 14 12 11 16 16 O 1.21275 * 120.00531 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99634 * 179.97438 * 15 14 12 18 18 S 1.80997 * 109.46980 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00183 * 180.02562 * 18 17 15 20 20 H 1.08010 * 120.00045 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00511 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99756 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00455 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46807 * 59.99616 * 23 21 19 25 25 H 1.48493 * 109.47266 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47153 * 300.00007 * 23 21 19 27 27 C 1.52990 * 109.47398 * 180.02562 * 7 5 4 28 28 H 1.08995 * 109.47098 * 300.00077 * 1 2 3 29 29 H 1.09003 * 109.47054 * 59.99725 * 1 2 3 30 30 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47098 * 239.99923 * 2 1 3 32 32 H 1.08998 * 109.46617 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47168 * 299.99945 * 3 2 1 34 34 H 1.08994 * 109.46839 * 60.00381 * 3 2 1 35 35 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 36 36 H 1.09003 * 109.46582 * 300.00001 * 9 7 5 37 37 H 1.09001 * 109.46852 * 59.99630 * 9 7 5 38 38 H 1.08998 * 109.46818 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47128 * 299.99281 * 10 9 7 40 40 H 1.09005 * 109.46920 * 60.00358 * 11 10 9 41 41 H 1.09007 * 109.47253 * 179.97438 * 11 10 9 42 42 H 0.96996 * 120.00413 * 94.99949 * 14 12 11 43 43 H 1.08991 * 109.47400 * 300.00300 * 17 15 14 44 44 H 1.09003 * 109.46909 * 60.00328 * 17 15 14 45 45 H 0.97001 * 120.00050 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47508 * 300.00200 * 27 7 5 47 47 H 1.09011 * 109.47182 * 60.00188 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1417 -2.0327 1.1962 6 8 1.8533 -2.6683 0.2043 7 6 2.6382 -2.7438 2.4287 8 1 1.9643 -2.5412 3.2612 9 6 4.0419 -2.2434 2.7756 10 6 4.5456 -2.9649 4.0272 11 6 4.5916 -4.4712 3.7638 12 6 3.1880 -4.9715 3.4170 13 1 3.2207 -6.0449 3.2298 14 7 2.2821 -4.6989 4.5356 15 6 2.1981 -5.5683 5.5620 16 8 2.8727 -6.5762 5.5599 17 6 1.2667 -5.2875 6.7130 18 16 1.3794 -6.6301 7.9216 19 6 0.2222 -6.0596 9.1216 20 1 -0.3002 -5.1269 8.9673 21 6 -0.0181 -6.8085 10.2652 22 7 0.6182 -7.9454 10.4530 23 14 -1.2443 -6.2032 11.5377 24 1 -2.5832 -6.0678 10.9096 25 1 -1.3189 -7.1775 12.6559 26 1 -0.8062 -4.8835 12.0588 27 6 2.6849 -4.2500 2.1646 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2490 -0.1823 1.9895 36 1 4.7157 -2.4459 1.9430 37 1 4.0089 -1.1703 2.9636 38 1 5.5454 -2.6081 4.2745 39 1 3.8717 -2.7619 4.8595 40 1 5.2657 -4.6741 2.9316 41 1 4.9510 -4.9852 4.6555 42 1 1.7428 -3.8927 4.5376 43 1 1.5479 -4.3471 7.1868 44 1 0.2437 -5.2167 6.3436 45 1 0.4500 -8.4691 11.2520 46 1 1.6851 -4.6067 1.9172 47 1 3.3591 -4.4521 1.3321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116058101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:35 Heat of formation + Delta-G solvation = -129.601771 kcal Electronic energy + Delta-G solvation = -25873.920960 eV Core-core repulsion = 22180.484664 eV Total energy + Delta-G solvation = -3693.436296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65630 -40.58980 -38.69805 -36.91058 -34.82445 -34.56760 -32.91557 -31.77462 -31.39178 -29.55825 -28.08838 -27.63573 -25.04246 -23.56273 -22.43864 -22.06165 -21.38435 -20.09897 -19.87972 -18.42726 -17.57652 -17.26944 -16.95403 -16.86536 -16.64346 -16.28121 -15.82754 -15.69284 -15.18101 -15.12342 -14.87848 -14.65419 -14.51869 -13.95091 -13.70675 -13.59176 -13.42088 -13.25346 -13.18314 -13.15356 -13.06123 -12.92953 -12.85701 -12.60048 -12.36650 -12.26467 -11.90863 -11.78969 -11.72363 -11.45168 -11.24587 -11.11838 -10.89547 -10.67388 -10.25821 -10.08009 -10.03911 -8.65111 -8.33297 -6.11221 1.28130 1.44476 1.47956 1.57488 1.64924 1.65787 2.20862 2.27560 2.33078 3.00649 3.33743 3.51650 3.67304 3.76804 3.92696 3.98264 4.08462 4.14211 4.20791 4.25925 4.31693 4.34148 4.37862 4.46267 4.52366 4.65060 4.67148 4.74523 4.77156 4.85676 4.95060 5.04582 5.06956 5.09362 5.14037 5.27842 5.28507 5.32661 5.33393 5.39611 5.42574 5.58599 5.60039 6.20655 6.53335 6.59595 7.07794 7.28912 7.29867 8.75575 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002395 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.898154 B =11688.497390 C =12691.716686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.153 4.153 4 N -0.714 5.714 5 C 0.519 3.481 6 O -0.583 6.583 7 C -0.102 4.102 8 H 0.113 0.887 9 C -0.099 4.099 10 C -0.111 4.111 11 C -0.131 4.131 12 C 0.149 3.851 13 H 0.065 0.935 14 N -0.705 5.705 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.261 1.261 27 C -0.095 4.095 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.411 0.589 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.064 0.936 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 23.927 -20.241 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.210 4.210 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.462 6.462 7 C -0.124 4.124 8 H 0.131 0.869 9 C -0.137 4.137 10 C -0.149 4.149 11 C -0.170 4.170 12 C 0.045 3.955 13 H 0.083 0.917 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.133 4.133 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.249 0.751 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.273 21.698 -20.886 30.575 hybrid contribution -1.580 1.147 1.129 2.255 sum 3.692 22.845 -19.757 30.428 Atomic orbital electron populations 1.22164 0.95368 1.01223 1.03232 1.20985 0.94129 0.94098 0.88050 1.22021 1.01881 0.93077 1.04035 1.46079 1.66722 1.06365 1.17460 1.20888 0.76344 0.82779 0.89328 1.90700 1.51720 1.67016 1.36807 1.21351 1.00119 0.94982 0.95926 0.86948 1.21516 0.92959 1.01047 0.98166 1.21457 1.02383 0.93277 0.97779 1.21915 0.95775 0.97492 1.01784 1.20952 0.89639 0.99678 0.85253 0.91679 1.45860 1.44870 1.24953 1.20274 1.20046 0.81863 0.82745 0.83235 1.90689 1.45771 1.28714 1.79088 1.23378 1.02491 1.04503 0.97711 1.85601 1.57544 1.29644 1.19697 1.23171 1.27857 1.10844 1.07491 0.89872 1.26135 0.98511 0.94625 0.99978 1.70181 1.42176 1.14137 1.28303 0.85009 0.78010 0.78310 0.76694 1.18745 1.20509 1.18503 1.21503 1.02492 0.93350 0.95975 0.91323 0.90582 0.94781 0.91735 0.91593 0.90187 0.90701 0.74798 0.91218 0.88658 0.90344 0.91633 0.89826 0.93827 0.75108 0.87005 0.87502 0.92041 0.91773 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 71.98 0.68 -1.19 16 2 C 0.13 1.43 3.18 44.99 0.14 1.58 16 3 C -0.15 -0.74 9.38 71.98 0.68 -0.07 16 4 N -0.71 -7.36 4.97 -442.53 -2.20 -9.56 16 5 C 0.52 8.62 7.12 87.66 0.62 9.24 16 6 O -0.58 -15.12 15.65 -3.04 -0.05 -15.17 16 7 C -0.10 -1.34 2.35 -11.54 -0.03 -1.36 16 8 H 0.11 1.11 6.50 -2.39 -0.02 1.09 16 9 C -0.10 -0.96 5.10 30.60 0.16 -0.80 16 10 C -0.11 -1.53 5.76 30.59 0.18 -1.35 16 11 C -0.13 -2.64 5.60 30.59 0.17 -2.47 16 12 C 0.15 3.39 2.78 45.01 0.13 3.52 16 13 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 14 N -0.70 -17.26 4.23 -442.45 -1.87 -19.13 16 15 C 0.54 19.43 7.81 87.66 0.68 20.11 16 16 O -0.56 -26.07 15.52 -3.01 -0.05 -26.11 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 19 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 23 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 27 C -0.09 -1.76 4.18 30.61 0.13 -1.63 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.02 7.58 -2.39 -0.02 1.00 16 32 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.41 1.77 8.02 -92.71 -0.74 1.02 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.43 7.56 -2.39 -0.02 0.42 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.95 7.60 -2.39 -0.02 0.93 16 40 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.41 7.24 6.87 -92.71 -0.64 6.60 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.06 1.38 8.10 -2.39 -0.02 1.37 16 47 H 0.08 1.62 8.10 -2.38 -0.02 1.60 16 Total: -1.00 -81.79 390.69 1.66 -80.13 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.41 Total: 18.08 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.09 Total: -8.23 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.79 Total: -84.50 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.09 Total: -41.28 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.79 1.66 -80.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.470 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds