Wall clock time and date at job start Tue Mar 31 2020 16:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47407 * 2 1 4 4 N 1.46499 * 109.46876 * 120.00177 * 2 1 3 5 5 C 1.34779 * 119.99872 * 154.99967 * 4 2 1 6 6 O 1.21273 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99944 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46980 * 299.99941 * 7 5 4 9 9 C 1.53006 * 109.47126 * 59.99710 * 7 5 4 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 7 12 12 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 13 13 H 1.08992 * 109.47554 * 59.99639 * 12 11 10 14 14 N 1.46505 * 109.46998 * 180.02562 * 12 11 10 15 15 C 1.34770 * 119.99926 * 274.99646 * 14 12 11 16 16 O 1.21283 * 120.00026 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00243 * 180.02562 * 15 14 12 18 18 S 1.81003 * 109.47546 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99954 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00576 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99863 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99558 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47461 * 60.00071 * 23 21 19 25 25 H 1.48501 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47015 * 300.00085 * 23 21 19 27 27 C 1.52997 * 109.47084 * 179.97438 * 7 5 4 28 28 H 1.09004 * 109.46753 * 300.00451 * 1 2 3 29 29 H 1.08996 * 109.47311 * 59.99599 * 1 2 3 30 30 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46826 * 239.99498 * 2 1 3 32 32 H 1.09005 * 109.47015 * 59.99925 * 3 2 1 33 33 H 1.08997 * 109.47615 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46947 * 300.00057 * 3 2 1 35 35 H 0.97000 * 120.00420 * 334.99211 * 4 2 1 36 36 H 1.08998 * 109.46505 * 59.99690 * 9 7 5 37 37 H 1.08996 * 109.46884 * 300.00571 * 9 7 5 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.46832 * 60.00321 * 10 9 7 40 40 H 1.09004 * 109.46724 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 42 42 H 0.96996 * 119.99706 * 94.99842 * 14 12 11 43 43 H 1.09007 * 109.47167 * 300.00011 * 17 15 14 44 44 H 1.09004 * 109.47373 * 60.00018 * 17 15 14 45 45 H 0.97001 * 119.99640 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47045 * 60.00033 * 27 7 5 47 47 H 1.09001 * 109.47375 * 299.99958 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7428 -1.9692 2.4250 8 1 3.7796 -1.2685 3.2591 9 6 2.7987 -3.1230 2.7695 10 6 3.3093 -3.8441 4.0185 11 6 4.7116 -4.3948 3.7521 12 6 5.6557 -3.2411 3.4077 13 1 5.6928 -2.5406 4.2419 14 7 6.9984 -3.7685 3.1520 15 6 7.8446 -3.9837 4.1786 16 8 7.4944 -3.7412 5.3142 17 6 9.2259 -4.5256 3.9156 18 16 10.1134 -4.7023 5.4831 19 6 11.6493 -5.3349 4.8955 20 1 11.7984 -5.4949 3.8379 21 6 12.6683 -5.6266 5.7919 22 7 12.4868 -5.4311 7.0808 23 14 14.2968 -6.2966 5.1689 24 1 14.9099 -5.3182 4.2350 25 1 15.2101 -6.5245 6.3175 26 1 14.0650 -7.5802 4.4591 27 6 5.1451 -2.5204 2.1590 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.4622 -0.7387 1.9895 36 1 2.7619 -3.8236 1.9353 37 1 1.7996 -2.7306 2.9588 38 1 2.6369 -4.6663 4.2637 39 1 3.3464 -3.1436 4.8528 40 1 5.0751 -4.9090 4.6418 41 1 4.6745 -5.0953 2.9178 42 1 7.2782 -3.9627 2.2438 43 1 9.1482 -5.4985 3.4300 44 1 9.7686 -3.8381 3.2668 45 1 13.1987 -5.6353 7.7073 46 1 5.8178 -1.6987 1.9134 47 1 5.1078 -3.2212 1.3250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116058103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:45 Heat of formation + Delta-G solvation = -108.139791 kcal Electronic energy + Delta-G solvation = -25402.096203 eV Core-core repulsion = 21709.590568 eV Total energy + Delta-G solvation = -3692.505635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -40.69926 -39.39988 -37.70077 -36.27456 -34.09046 -32.40513 -32.17555 -30.91647 -30.26951 -28.07605 -27.69960 -25.45282 -24.36397 -22.62745 -21.72530 -20.84805 -20.34286 -19.86256 -17.86391 -17.51553 -16.65104 -16.23428 -15.89955 -15.52249 -15.02235 -14.91812 -14.78079 -14.60708 -14.28296 -14.09133 -14.01478 -13.56053 -13.21948 -13.14403 -12.87756 -12.75984 -12.74843 -12.55821 -12.41906 -11.92236 -11.86539 -11.59087 -11.43708 -11.41872 -11.02308 -11.01918 -11.01291 -10.78692 -10.75373 -10.66483 -9.96235 -9.79363 -9.48319 -9.32240 -9.03861 -8.81847 -8.21254 -6.47145 -6.19270 -3.89479 2.34275 2.74573 3.08672 3.14330 3.25494 3.29422 3.33848 3.74031 4.19698 4.23124 4.39080 4.41930 4.49986 4.58057 4.76281 4.83923 4.92156 4.96889 5.08834 5.09832 5.15344 5.15826 5.20969 5.24613 5.28987 5.30369 5.38082 5.45488 5.62338 5.63396 5.69876 5.70481 5.80452 5.82168 5.90558 5.93641 5.99723 6.12067 6.18291 6.19255 6.24348 6.72613 7.12726 7.61848 7.78118 7.91048 8.37568 8.66955 9.25988 10.88111 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.001949 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.402582 B =14362.137755 C =14887.579970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.729 5.729 5 C 0.520 3.480 6 O -0.536 6.536 7 C -0.103 4.103 8 H 0.101 0.899 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.133 4.133 12 C 0.148 3.852 13 H 0.088 0.912 14 N -0.735 5.735 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.105 4.105 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.077 0.923 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.867 9.241 -13.522 31.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.223 4.223 4 N -0.382 5.382 5 C 0.307 3.693 6 O -0.412 6.412 7 C -0.125 4.125 8 H 0.119 0.881 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.172 4.172 12 C 0.043 3.957 13 H 0.106 0.894 14 N -0.388 5.388 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.856 9.688 -12.165 31.033 hybrid contribution 1.301 -0.767 -1.787 2.340 sum -25.554 8.920 -13.953 30.451 Atomic orbital electron populations 1.22078 0.94125 1.02644 1.02970 1.20935 0.93935 0.93105 0.89002 1.22190 1.02264 0.95750 1.02069 1.46157 1.18118 1.57110 1.16780 1.20698 0.81023 0.77940 0.89677 1.90708 1.55987 1.59449 1.35089 1.21294 0.96748 0.98139 0.96286 0.88071 1.21563 0.97516 0.96466 0.99176 1.21480 0.96410 1.00215 0.97136 1.21978 0.94431 0.98203 1.02588 1.20838 0.81794 0.95291 0.97763 0.89430 1.46051 1.14198 1.68424 1.10101 1.20291 0.86091 0.76920 0.84721 1.90689 1.77054 1.49884 1.21648 1.23544 0.95596 1.03458 1.07894 1.85358 1.11211 1.84818 1.01962 1.22839 0.99577 1.50140 0.95856 0.90986 1.24988 0.98804 0.95210 0.94572 1.70009 1.33574 1.45429 1.01317 0.86227 0.81636 0.79343 0.78313 1.19944 1.20821 1.19957 1.21578 0.94329 1.00877 0.97604 0.92035 0.90934 0.91948 0.89486 0.92470 0.91996 0.91662 0.76607 0.91246 0.91509 0.91236 0.91309 0.90763 0.91768 0.76809 0.89252 0.89239 0.92161 0.90480 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.38 37.16 0.35 -0.23 16 2 C 0.13 0.82 3.18 -67.93 -0.22 0.61 16 3 C -0.16 -1.02 9.48 37.15 0.35 -0.67 16 4 N -0.73 -4.53 4.97 -53.81 -0.27 -4.80 16 5 C 0.52 4.75 7.12 -10.98 -0.08 4.67 16 6 O -0.54 -7.05 15.64 5.56 0.09 -6.96 16 7 C -0.10 -0.80 2.53 -91.77 -0.23 -1.03 16 8 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 9 C -0.11 -0.70 5.10 -26.73 -0.14 -0.83 16 10 C -0.11 -0.89 5.92 -26.73 -0.16 -1.05 16 11 C -0.13 -1.42 5.49 -26.73 -0.15 -1.57 16 12 C 0.15 1.74 2.45 -67.95 -0.17 1.58 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 N -0.73 -10.09 5.08 -53.83 -0.27 -10.36 16 15 C 0.53 10.03 7.81 -10.99 -0.09 9.94 16 16 O -0.52 -11.68 15.53 5.55 0.09 -11.59 16 17 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.11 -1.04 3.95 -26.76 -0.11 -1.15 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.70 7.58 -51.93 -0.39 0.31 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 1.48 8.02 -40.82 -0.33 1.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.29 7.56 -51.93 -0.39 -0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 47 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -36.11 395.11 -9.28 -45.39 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.16 Total: 1.04 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.21 Total: -5.80 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.19 Total: -40.77 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.11 -9.28 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.747 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds