Wall clock time and date at job start Tue Mar 31 2020 16:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47407 * 2 1 4 4 N 1.46499 * 109.46876 * 120.00177 * 2 1 3 5 5 C 1.34779 * 119.99872 * 154.99967 * 4 2 1 6 6 O 1.21273 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99944 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46980 * 299.99941 * 7 5 4 9 9 C 1.53006 * 109.47126 * 59.99710 * 7 5 4 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 7 12 12 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 13 13 H 1.08992 * 109.47554 * 59.99639 * 12 11 10 14 14 N 1.46505 * 109.46998 * 180.02562 * 12 11 10 15 15 C 1.34770 * 119.99926 * 274.99646 * 14 12 11 16 16 O 1.21283 * 120.00026 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00243 * 180.02562 * 15 14 12 18 18 S 1.81003 * 109.47546 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99954 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00576 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99863 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99558 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47461 * 60.00071 * 23 21 19 25 25 H 1.48501 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47015 * 300.00085 * 23 21 19 27 27 C 1.52997 * 109.47084 * 179.97438 * 7 5 4 28 28 H 1.09004 * 109.46753 * 300.00451 * 1 2 3 29 29 H 1.08996 * 109.47311 * 59.99599 * 1 2 3 30 30 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46826 * 239.99498 * 2 1 3 32 32 H 1.09005 * 109.47015 * 59.99925 * 3 2 1 33 33 H 1.08997 * 109.47615 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46947 * 300.00057 * 3 2 1 35 35 H 0.97000 * 120.00420 * 334.99211 * 4 2 1 36 36 H 1.08998 * 109.46505 * 59.99690 * 9 7 5 37 37 H 1.08996 * 109.46884 * 300.00571 * 9 7 5 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.46832 * 60.00321 * 10 9 7 40 40 H 1.09004 * 109.46724 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 42 42 H 0.96996 * 119.99706 * 94.99842 * 14 12 11 43 43 H 1.09007 * 109.47167 * 300.00011 * 17 15 14 44 44 H 1.09004 * 109.47373 * 60.00018 * 17 15 14 45 45 H 0.97001 * 119.99640 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47045 * 60.00033 * 27 7 5 47 47 H 1.09001 * 109.47375 * 299.99958 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7428 -1.9692 2.4250 8 1 3.7796 -1.2685 3.2591 9 6 2.7987 -3.1230 2.7695 10 6 3.3093 -3.8441 4.0185 11 6 4.7116 -4.3948 3.7521 12 6 5.6557 -3.2411 3.4077 13 1 5.6928 -2.5406 4.2419 14 7 6.9984 -3.7685 3.1520 15 6 7.8446 -3.9837 4.1786 16 8 7.4944 -3.7412 5.3142 17 6 9.2259 -4.5256 3.9156 18 16 10.1134 -4.7023 5.4831 19 6 11.6493 -5.3349 4.8955 20 1 11.7984 -5.4949 3.8379 21 6 12.6683 -5.6266 5.7919 22 7 12.4868 -5.4311 7.0808 23 14 14.2968 -6.2966 5.1689 24 1 14.9099 -5.3182 4.2350 25 1 15.2101 -6.5245 6.3175 26 1 14.0650 -7.5802 4.4591 27 6 5.1451 -2.5204 2.1590 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.4622 -0.7387 1.9895 36 1 2.7619 -3.8236 1.9353 37 1 1.7996 -2.7306 2.9588 38 1 2.6369 -4.6663 4.2637 39 1 3.3464 -3.1436 4.8528 40 1 5.0751 -4.9090 4.6418 41 1 4.6745 -5.0953 2.9178 42 1 7.2782 -3.9627 2.2438 43 1 9.1482 -5.4985 3.4300 44 1 9.7686 -3.8381 3.2668 45 1 13.1987 -5.6353 7.7073 46 1 5.8178 -1.6987 1.9134 47 1 5.1078 -3.2212 1.3250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116058103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:42 Heat of formation + Delta-G solvation = -133.679099 kcal Electronic energy + Delta-G solvation = -25403.203670 eV Core-core repulsion = 21709.590568 eV Total energy + Delta-G solvation = -3693.613102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.50382 -40.62648 -38.68060 -36.91347 -35.26743 -34.58671 -32.89573 -31.74387 -31.40021 -29.33562 -28.09074 -27.64533 -25.08808 -23.49575 -22.38623 -21.71212 -21.39614 -20.75969 -19.78114 -18.38558 -17.81108 -17.25184 -16.90680 -16.87097 -16.45361 -16.33397 -15.82377 -15.65562 -15.19456 -15.07155 -14.86023 -14.65723 -14.60049 -14.18173 -13.86778 -13.74314 -13.45362 -13.36378 -13.17251 -13.07268 -13.02086 -12.87153 -12.63022 -12.41473 -12.26473 -12.21742 -11.91755 -11.78711 -11.66998 -11.64686 -11.49347 -11.13322 -10.90604 -10.69381 -10.29003 -10.09920 -10.04399 -8.66786 -8.34860 -6.12873 1.26308 1.43460 1.45960 1.56151 1.61647 1.64437 2.11825 2.27097 2.37807 2.98991 3.31247 3.52924 3.71674 3.77742 3.89408 3.97795 4.08733 4.15358 4.18336 4.29020 4.32673 4.34143 4.38693 4.44334 4.46706 4.50412 4.64589 4.74475 4.76872 4.93787 4.95310 5.03215 5.05496 5.10028 5.11865 5.25187 5.27449 5.31019 5.33034 5.41048 5.41570 5.56114 5.59216 6.19308 6.50933 6.58889 7.06190 7.24834 7.29110 8.74118 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.001949 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.402582 B =14362.137755 C =14887.579970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.583 6.583 7 C -0.098 4.098 8 H 0.115 0.885 9 C -0.101 4.101 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.149 3.851 13 H 0.070 0.930 14 N -0.713 5.713 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.549 4.549 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.096 4.096 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.413 0.587 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.614 9.242 -15.211 33.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.462 6.462 7 C -0.120 4.120 8 H 0.133 0.867 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.169 4.169 12 C 0.044 3.956 13 H 0.088 0.912 14 N -0.366 5.366 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.283 4.283 18 S 0.080 5.920 19 C -0.697 4.697 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.820 3.180 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.672 9.701 -13.886 33.302 hybrid contribution 1.727 -0.707 -1.331 2.293 sum -26.945 8.995 -15.217 32.226 Atomic orbital electron populations 1.22022 0.91642 1.03247 1.04068 1.20995 0.95761 0.92544 0.88011 1.22162 1.00346 0.96193 1.03259 1.46067 1.17263 1.55807 1.17498 1.20862 0.81423 0.77790 0.89236 1.90695 1.57413 1.61393 1.36743 1.21273 0.95609 0.98962 0.96154 0.86730 1.21536 0.98463 0.95600 0.98221 1.21458 0.94525 1.00799 0.97922 1.21940 0.95954 0.97632 1.01404 1.20984 0.80749 0.95636 0.98199 0.91182 1.45881 1.14365 1.66619 1.09705 1.20005 0.85974 0.76847 0.84955 1.90676 1.77695 1.52108 1.23508 1.23396 0.95934 1.05150 1.03830 1.85507 1.13001 1.85242 1.08229 1.23182 0.99868 1.50244 0.96416 0.90049 1.26123 1.03102 0.95223 0.94642 1.70173 1.35018 1.46589 1.02868 0.85009 0.76109 0.78981 0.77930 1.18757 1.20244 1.18685 1.21452 0.95561 1.00143 0.96274 0.90630 0.90169 0.91580 0.91761 0.91287 0.94869 0.90520 0.74757 0.91330 0.88368 0.89804 0.91216 0.93863 0.90902 0.75050 0.87352 0.87516 0.91958 0.91866 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.38 71.98 0.68 -0.01 16 2 C 0.13 1.41 3.18 44.99 0.14 1.55 16 3 C -0.16 -1.83 9.48 71.98 0.68 -1.15 16 4 N -0.71 -7.39 4.97 -442.55 -2.20 -9.59 16 5 C 0.52 8.82 7.12 87.66 0.62 9.44 16 6 O -0.58 -15.28 15.64 -3.01 -0.05 -15.33 16 7 C -0.10 -1.36 2.53 -11.54 -0.03 -1.38 16 8 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 9 C -0.10 -0.98 5.10 30.60 0.16 -0.83 16 10 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 11 C -0.13 -2.69 5.49 30.59 0.17 -2.52 16 12 C 0.15 3.44 2.45 44.97 0.11 3.55 16 13 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 14 N -0.71 -19.26 5.08 -442.62 -2.25 -21.51 16 15 C 0.54 20.36 7.81 87.66 0.68 21.04 16 16 O -0.56 -26.18 15.53 -3.04 -0.05 -26.23 16 17 C -0.13 -5.40 6.16 71.23 0.44 -4.96 16 18 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 19 C -0.55 -31.90 9.50 67.96 0.65 -31.26 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 23 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 27 C -0.10 -1.82 3.95 30.58 0.12 -1.70 16 28 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 1.01 7.58 -2.39 -0.02 0.99 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.42 1.69 8.02 -92.71 -0.74 0.95 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.41 7.56 -2.39 -0.02 0.39 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.41 8.78 8.60 -92.71 -0.80 7.98 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 47 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -82.20 395.11 1.10 -81.10 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.58 Total: 19.17 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.07 Total: -8.22 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.16 Total: -87.22 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.09 Total: -41.56 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -82.20 1.10 -81.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116058103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.577 kcal (2) G-P(sol) polarization free energy of solvation -82.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds