Wall clock time and date at job start Tue Mar 31 2020 15:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46502 * 109.47082 * 239.99420 * 2 1 3 5 5 C 1.34776 * 119.99717 * 60.00450 * 4 2 1 6 6 O 1.21279 * 120.00452 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00037 * 179.97438 * 5 4 2 8 8 S 1.80999 * 109.46976 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99613 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00445 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99812 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99870 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00009 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46824 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.46968 * 119.99600 * 13 11 9 16 16 H 1.48499 * 109.47106 * 239.99938 * 13 11 9 17 17 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 18 18 O 1.21281 * 119.99699 * 264.99617 * 17 2 1 19 19 N 1.34773 * 120.00080 * 85.00108 * 17 2 1 20 20 C 1.46506 * 119.99969 * 180.02562 * 19 17 2 21 21 C 1.52998 * 109.47237 * 179.72043 * 20 19 17 22 22 C 1.54258 * 110.03455 * 292.90744 * 21 20 19 23 23 C 1.54967 * 104.16246 * 217.13741 * 22 21 20 24 24 C 1.54887 * 102.77367 * 37.88475 * 23 22 21 25 25 C 1.53874 * 110.03277 * 175.68586 * 21 20 19 26 26 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 27 27 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 28 28 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 31 31 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 32 32 H 0.96994 * 120.00423 * 240.00008 * 4 2 1 33 33 H 1.08997 * 109.46963 * 300.00176 * 7 5 4 34 34 H 1.08999 * 109.46563 * 60.00098 * 7 5 4 35 35 H 0.97004 * 119.99880 * 180.02562 * 12 11 9 36 36 H 0.97005 * 120.00161 * 359.72088 * 19 17 2 37 37 H 1.09001 * 109.46512 * 299.72412 * 20 19 17 38 38 H 1.08998 * 109.47174 * 59.71534 * 20 19 17 39 39 H 1.09006 * 110.01511 * 54.29951 * 21 20 19 40 40 H 1.09005 * 110.48463 * 335.78619 * 22 21 20 41 41 H 1.09006 * 110.48910 * 98.42335 * 22 21 20 42 42 H 1.09007 * 110.71710 * 279.57479 * 23 22 21 43 43 H 1.09001 * 110.92470 * 156.29521 * 23 22 21 44 44 H 1.09006 * 110.48348 * 203.40513 * 24 23 22 45 45 H 1.08996 * 110.59816 * 80.82043 * 24 23 22 46 46 H 1.09001 * 110.03624 * 238.57082 * 25 21 20 47 47 H 1.09006 * 110.03109 * 359.95719 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6927 -0.2303 -2.4202 6 8 0.9951 0.7555 -2.5316 7 6 2.1955 -0.9405 -3.6507 8 16 1.5914 -0.0877 -5.1286 9 6 2.3075 -1.1004 -6.3802 10 1 2.9112 -1.9527 -6.1055 11 6 2.0965 -0.8021 -7.7192 12 7 1.3611 0.2370 -8.0541 13 14 2.8562 -1.8752 -9.0462 14 1 3.6325 -2.9710 -8.4123 15 1 1.7806 -2.4542 -9.8905 16 1 3.7599 -1.0532 -9.8904 17 6 2.0322 -0.7105 1.2305 18 8 2.3207 -0.0749 2.2224 19 7 2.1609 -2.0520 1.2287 20 6 2.6487 -2.7427 2.4252 21 6 2.6937 -4.2492 2.1617 22 6 1.2624 -4.7990 1.9922 23 6 1.3083 -6.1912 2.6713 24 6 2.2243 -5.9451 3.8957 25 6 3.3054 -4.9778 3.3711 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.5759 -1.4794 -1.1071 33 1 3.2854 -0.9401 -3.6505 34 1 1.8324 -1.9682 -3.6508 35 1 1.2133 0.4452 -8.9899 36 1 1.9264 -2.5607 0.4368 37 1 3.6498 -2.3861 2.6677 38 1 1.9785 -2.5398 3.2605 39 1 3.2808 -4.4540 1.2664 40 1 0.5434 -4.1527 2.4957 41 1 1.0140 -4.8971 0.9354 42 1 1.7475 -6.9320 2.0029 43 1 0.3131 -6.5021 2.9895 44 1 2.6770 -6.8796 4.2274 45 1 1.6625 -5.4848 4.7085 46 1 4.1888 -5.5368 3.0627 47 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127257926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:41 Heat of formation + Delta-G solvation = -95.503963 kcal Electronic energy + Delta-G solvation = -25906.695430 eV Core-core repulsion = 22214.737725 eV Total energy + Delta-G solvation = -3691.957704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81824 -39.26277 -38.51080 -35.40244 -34.88234 -32.46402 -31.91925 -30.34264 -29.11414 -28.61296 -27.26332 -25.62141 -25.48791 -23.09030 -21.21199 -20.89641 -20.17136 -19.41073 -18.48077 -17.50316 -16.86727 -16.32888 -15.83667 -15.59564 -15.14308 -14.99912 -14.91607 -14.83605 -14.15263 -14.06399 -13.85970 -13.70261 -13.32396 -13.16741 -12.70849 -12.65795 -12.36320 -12.22593 -12.03444 -11.80417 -11.64679 -11.55923 -11.48913 -11.28630 -11.23310 -11.09463 -11.06239 -11.05026 -10.90673 -10.79469 -10.13525 -9.84059 -9.42545 -9.23987 -9.13232 -9.07706 -8.27979 -6.53913 -6.25400 -3.96016 2.25583 2.78210 2.95230 2.99285 3.19092 3.25159 3.29273 3.60748 4.09887 4.12113 4.16678 4.22536 4.41437 4.75880 4.86359 4.89933 4.97151 4.99726 5.01899 5.07988 5.10203 5.16719 5.24544 5.35815 5.44268 5.49641 5.52048 5.53757 5.64795 5.67335 5.70282 5.76779 5.80154 5.81839 5.88964 5.91254 5.92216 6.06162 6.08260 6.23296 6.35546 6.47663 7.12082 7.53345 7.56773 7.87828 8.31735 8.49390 9.20322 10.81989 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.002653 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.921693 B =10550.638714 C =12177.097426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 C -0.151 4.151 4 N -0.736 5.736 5 C 0.539 3.461 6 O -0.505 6.505 7 C -0.155 4.155 8 S -0.057 6.057 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.520 3.480 18 O -0.528 6.528 19 N -0.729 5.729 20 C 0.125 3.875 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.117 4.117 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.401 0.599 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -11.677 22.993 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.076 3.924 3 C -0.210 4.210 4 N -0.394 5.394 5 C 0.325 3.675 6 O -0.379 6.379 7 C -0.305 4.305 8 S 0.170 5.830 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.305 3.695 18 O -0.403 6.403 19 N -0.383 5.383 20 C 0.002 3.998 21 C -0.125 4.125 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.155 4.155 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.872 -9.442 23.413 25.260 hybrid contribution 1.535 -2.567 -1.062 3.174 sum 2.407 -12.010 22.351 25.487 Atomic orbital electron populations 1.22200 0.91812 1.02911 1.04914 1.20498 0.96191 0.93907 0.81838 1.22074 1.01303 0.93212 1.04370 1.46211 1.55539 1.32600 1.05027 1.20278 0.79499 0.84302 0.83391 1.90651 1.36048 1.25154 1.86002 1.23556 1.04505 1.03934 0.98543 1.85403 1.67397 1.38455 0.91761 1.22898 1.37278 1.15631 0.92580 0.90891 1.24994 0.95050 0.95571 0.97979 1.70021 1.36297 1.25766 1.18125 0.86119 0.78876 0.79829 0.80684 1.19627 1.20562 1.20563 1.20652 0.77050 0.82107 0.89658 1.90715 1.48751 1.66047 1.34772 1.46129 1.67750 1.07140 1.17250 1.21560 0.99944 0.90715 0.87600 1.22062 0.97458 0.93400 0.99625 1.22511 0.95913 0.96642 1.01063 1.22504 0.99763 0.97013 0.97011 1.22364 0.96911 0.99138 0.97888 1.22119 0.98398 0.98172 0.96839 0.91345 0.88429 0.92318 0.92430 0.89059 0.90956 0.77025 0.89173 0.89179 0.92205 0.76347 0.91326 0.91238 0.90114 0.91196 0.91358 0.91403 0.91521 0.91650 0.91586 0.91352 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.38 37.15 0.31 -1.65 16 2 C 0.17 2.06 0.98 -132.97 -0.13 1.93 16 3 C -0.15 -2.10 7.93 37.15 0.29 -1.80 16 4 N -0.74 -9.15 4.86 -48.68 -0.24 -9.38 16 5 C 0.54 9.15 7.27 -10.98 -0.08 9.07 16 6 O -0.51 -10.26 12.07 5.56 0.07 -10.19 16 7 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 8 S -0.06 -1.47 20.57 -107.50 -2.21 -3.69 16 9 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 10 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 11 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 12 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 13 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.52 6.17 6.65 -10.98 -0.07 6.09 16 18 O -0.53 -7.91 16.10 5.56 0.09 -7.82 16 19 N -0.73 -6.25 5.08 -60.29 -0.31 -6.56 16 20 C 0.13 0.96 4.73 -4.04 -0.02 0.94 16 21 C -0.11 -0.62 2.97 -89.51 -0.27 -0.88 16 22 C -0.12 -0.73 6.05 -25.03 -0.15 -0.88 16 23 C -0.13 -0.69 6.91 -24.70 -0.17 -0.86 16 24 C -0.13 -0.65 6.83 -25.07 -0.17 -0.83 16 25 C -0.12 -0.63 6.46 -25.61 -0.17 -0.79 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.44 6.17 -51.93 -0.32 1.12 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 31 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.40 3.78 7.25 -40.82 -0.30 3.49 16 33 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 34 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.40 2.77 7.09 -40.82 -0.29 2.48 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.46 7.77 -51.93 -0.40 0.05 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -33.52 389.04 -9.12 -42.63 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.89 Total: 3.01 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.20 Total: -4.91 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.19 Total: -40.86 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.52 -9.12 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127257926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.870 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds