Wall clock time and date at job start Tue Mar 31 2020 15:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46502 * 109.47082 * 239.99420 * 2 1 3 5 5 C 1.34776 * 119.99717 * 60.00450 * 4 2 1 6 6 O 1.21279 * 120.00452 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00037 * 179.97438 * 5 4 2 8 8 S 1.80999 * 109.46976 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99613 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00445 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99812 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99870 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00009 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46824 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.46968 * 119.99600 * 13 11 9 16 16 H 1.48499 * 109.47106 * 239.99938 * 13 11 9 17 17 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 18 18 O 1.21281 * 119.99699 * 264.99617 * 17 2 1 19 19 N 1.34773 * 120.00080 * 85.00108 * 17 2 1 20 20 C 1.46506 * 119.99969 * 180.02562 * 19 17 2 21 21 C 1.52998 * 109.47237 * 179.72043 * 20 19 17 22 22 C 1.54258 * 110.03455 * 292.90744 * 21 20 19 23 23 C 1.54967 * 104.16246 * 217.13741 * 22 21 20 24 24 C 1.54887 * 102.77367 * 37.88475 * 23 22 21 25 25 C 1.53874 * 110.03277 * 175.68586 * 21 20 19 26 26 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 27 27 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 28 28 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 31 31 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 32 32 H 0.96994 * 120.00423 * 240.00008 * 4 2 1 33 33 H 1.08997 * 109.46963 * 300.00176 * 7 5 4 34 34 H 1.08999 * 109.46563 * 60.00098 * 7 5 4 35 35 H 0.97004 * 119.99880 * 180.02562 * 12 11 9 36 36 H 0.97005 * 120.00161 * 359.72088 * 19 17 2 37 37 H 1.09001 * 109.46512 * 299.72412 * 20 19 17 38 38 H 1.08998 * 109.47174 * 59.71534 * 20 19 17 39 39 H 1.09006 * 110.01511 * 54.29951 * 21 20 19 40 40 H 1.09005 * 110.48463 * 335.78619 * 22 21 20 41 41 H 1.09006 * 110.48910 * 98.42335 * 22 21 20 42 42 H 1.09007 * 110.71710 * 279.57479 * 23 22 21 43 43 H 1.09001 * 110.92470 * 156.29521 * 23 22 21 44 44 H 1.09006 * 110.48348 * 203.40513 * 24 23 22 45 45 H 1.08996 * 110.59816 * 80.82043 * 24 23 22 46 46 H 1.09001 * 110.03624 * 238.57082 * 25 21 20 47 47 H 1.09006 * 110.03109 * 359.95719 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6927 -0.2303 -2.4202 6 8 0.9951 0.7555 -2.5316 7 6 2.1955 -0.9405 -3.6507 8 16 1.5914 -0.0877 -5.1286 9 6 2.3075 -1.1004 -6.3802 10 1 2.9112 -1.9527 -6.1055 11 6 2.0965 -0.8021 -7.7192 12 7 1.3611 0.2370 -8.0541 13 14 2.8562 -1.8752 -9.0462 14 1 3.6325 -2.9710 -8.4123 15 1 1.7806 -2.4542 -9.8905 16 1 3.7599 -1.0532 -9.8904 17 6 2.0322 -0.7105 1.2305 18 8 2.3207 -0.0749 2.2224 19 7 2.1609 -2.0520 1.2287 20 6 2.6487 -2.7427 2.4252 21 6 2.6937 -4.2492 2.1617 22 6 1.2624 -4.7990 1.9922 23 6 1.3083 -6.1912 2.6713 24 6 2.2243 -5.9451 3.8957 25 6 3.3054 -4.9778 3.3711 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.5759 -1.4794 -1.1071 33 1 3.2854 -0.9401 -3.6505 34 1 1.8324 -1.9682 -3.6508 35 1 1.2133 0.4452 -8.9899 36 1 1.9264 -2.5607 0.4368 37 1 3.6498 -2.3861 2.6677 38 1 1.9785 -2.5398 3.2605 39 1 3.2808 -4.4540 1.2664 40 1 0.5434 -4.1527 2.4957 41 1 1.0140 -4.8971 0.9354 42 1 1.7475 -6.9320 2.0029 43 1 0.3131 -6.5021 2.9895 44 1 2.6770 -6.8796 4.2274 45 1 1.6625 -5.4848 4.7085 46 1 4.1888 -5.5368 3.0627 47 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127257926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:41 Heat of formation + Delta-G solvation = -117.826245 kcal Electronic energy + Delta-G solvation = -25907.663397 eV Core-core repulsion = 22214.737725 eV Total energy + Delta-G solvation = -3692.925671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87955 -40.33604 -39.18928 -36.62158 -35.65640 -34.55929 -33.19761 -30.93880 -30.04680 -29.54125 -28.33669 -27.62912 -26.31435 -24.00545 -22.12205 -21.50885 -20.95937 -20.40306 -19.93073 -18.97806 -17.78543 -17.39290 -16.85867 -16.64072 -16.43491 -16.41651 -16.10309 -15.70930 -15.63941 -14.96526 -14.80792 -14.65434 -14.49399 -14.20476 -14.11456 -13.72894 -13.39044 -13.27881 -13.19980 -13.10055 -12.93344 -12.83031 -12.56551 -12.36164 -12.23419 -11.98178 -11.90246 -11.79313 -11.69259 -11.49984 -11.34985 -11.22090 -11.13798 -10.56724 -10.32329 -10.23120 -10.21029 -8.62221 -8.32750 -6.09196 1.17269 1.35477 1.42670 1.50872 1.59453 1.62633 1.94352 2.17904 2.29584 3.01915 3.32659 3.43736 3.62471 3.68620 3.78508 3.82039 3.90648 3.96450 4.32162 4.34572 4.39515 4.50761 4.54193 4.59159 4.61454 4.65796 4.70545 4.71077 4.77256 4.82248 4.86554 4.91847 5.05888 5.10141 5.13748 5.21477 5.26468 5.27760 5.32294 5.36418 5.45086 5.48059 5.52057 6.22342 6.28475 6.41976 6.98654 7.09458 7.20326 8.76344 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.002653 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.921693 B =10550.638714 C =12177.097426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 C -0.149 4.149 4 N -0.711 5.711 5 C 0.544 3.456 6 O -0.542 6.542 7 C -0.131 4.131 8 S -0.145 6.145 9 C -0.543 4.543 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.996 3.004 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.277 1.277 17 C 0.527 3.473 18 O -0.559 6.559 19 N -0.712 5.712 20 C 0.126 3.874 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.117 4.117 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.413 0.587 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.270 0.730 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -14.410 23.714 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 C -0.207 4.207 4 N -0.369 5.369 5 C 0.330 3.670 6 O -0.418 6.418 7 C -0.282 4.282 8 S 0.082 5.918 9 C -0.691 4.691 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.818 3.182 14 H -0.179 1.179 15 H -0.201 1.201 16 H -0.202 1.202 17 C 0.312 3.688 18 O -0.437 6.437 19 N -0.364 5.364 20 C 0.003 3.997 21 C -0.118 4.118 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.156 4.156 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.098 -12.241 24.160 27.166 hybrid contribution 1.161 -1.735 -1.136 2.376 sum 3.259 -13.976 23.025 27.131 Atomic orbital electron populations 1.22138 0.91426 1.03823 1.04068 1.20470 0.96493 0.93362 0.81917 1.22001 1.01176 0.94104 1.03442 1.45852 1.54733 1.32640 1.03634 1.19971 0.79205 0.83734 0.84098 1.90666 1.37811 1.26752 1.86542 1.23393 1.05294 1.04119 0.95440 1.85577 1.68834 1.41124 0.96235 1.23239 1.37082 1.15707 0.93109 0.89859 1.26092 0.95434 0.96947 1.00711 1.70182 1.38026 1.27862 1.18707 0.84940 0.77996 0.78043 0.77193 1.17928 1.20056 1.20229 1.20344 0.76899 0.82929 0.88638 1.90715 1.50425 1.66926 1.35610 1.46026 1.66305 1.06056 1.18053 1.21635 0.99405 0.91807 0.86810 1.22021 0.97690 0.91806 1.00241 1.22518 0.95655 0.96746 1.01309 1.22512 0.99900 0.96822 0.97092 1.22373 0.96847 0.99374 0.97762 1.22131 0.98638 0.98180 0.96608 0.90464 0.90987 0.90526 0.92493 0.91297 0.90527 0.74919 0.87362 0.86697 0.92091 0.75066 0.91704 0.91925 0.89192 0.91933 0.90890 0.91115 0.91492 0.91085 0.91855 0.90700 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.38 71.98 0.60 -3.07 16 2 C 0.17 3.96 0.98 2.85 0.00 3.96 16 3 C -0.15 -4.10 7.93 71.98 0.57 -3.53 16 4 N -0.71 -16.23 4.86 -426.33 -2.07 -18.30 16 5 C 0.54 17.92 7.27 87.66 0.64 18.56 16 6 O -0.54 -22.31 12.07 -3.03 -0.04 -22.35 16 7 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 8 S -0.14 -7.64 20.57 -56.49 -1.16 -8.80 16 9 C -0.54 -29.89 9.50 67.96 0.65 -29.24 16 10 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 11 C 0.01 0.72 5.49 84.86 0.47 1.18 16 12 N -0.91 -54.86 13.22 21.65 0.29 -54.58 16 13 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 14 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 15 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 17 C 0.53 11.52 6.65 87.66 0.58 12.10 16 18 O -0.56 -16.04 16.10 -3.03 -0.05 -16.09 16 19 N -0.71 -10.41 5.08 -463.05 -2.35 -12.76 16 20 C 0.13 1.67 4.73 86.38 0.41 2.08 16 21 C -0.10 -0.89 2.97 -10.07 -0.03 -0.92 16 22 C -0.12 -1.17 6.05 31.69 0.19 -0.98 16 23 C -0.13 -1.12 6.91 31.91 0.22 -0.89 16 24 C -0.13 -1.08 6.83 31.67 0.22 -0.86 16 25 C -0.12 -1.00 6.46 31.32 0.20 -0.80 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 2.13 6.17 -2.39 -0.01 2.12 16 28 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 2.24 6.17 -2.39 -0.01 2.22 16 31 H 0.08 2.02 7.87 -2.39 -0.02 2.00 16 32 H 0.41 6.55 7.25 -92.71 -0.67 5.88 16 33 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 34 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.41 4.32 7.09 -92.70 -0.66 3.66 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.02 -2.39 -0.02 0.94 16 39 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.06 0.69 7.77 -2.38 -0.02 0.67 16 41 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 42 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.60 7.67 -2.38 -0.02 0.58 16 Total: -1.00 -74.14 389.04 1.44 -72.70 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.36 Total: 22.32 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 5.16 Total: -6.72 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -4.14 Total: -85.64 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.09 Total: -38.44 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Total: -74.14 1.44 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127257926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.128 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds