Wall clock time and date at job start Tue Mar 31 2020 15:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47145 * 120.00043 * 2 1 3 5 5 O 1.21280 * 119.99861 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00110 * 180.02562 * 4 2 1 7 7 C 1.46496 * 120.00222 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47456 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.49848 * 305.06564 * 8 7 6 10 10 C 1.53039 * 109.50100 * 184.99603 * 8 7 6 11 11 C 1.53046 * 109.52798 * 178.68859 * 10 8 7 12 12 C 1.53159 * 109.32667 * 61.37318 * 11 10 8 13 13 N 1.46928 * 108.76987 * 305.35456 * 12 11 10 14 14 C 1.34773 * 120.63179 * 233.59029 * 13 12 11 15 15 O 1.21283 * 119.99742 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00193 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47451 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00140 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00216 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99875 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47018 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46643 * 120.00094 * 22 20 18 25 25 H 1.48499 * 109.46854 * 240.00206 * 22 20 18 26 26 C 1.46931 * 118.73792 * 53.61250 * 13 12 11 27 27 H 1.08997 * 109.47175 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.47000 * 60.00306 * 1 2 3 29 29 H 1.09004 * 109.46673 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47175 * 240.00429 * 2 1 3 31 31 H 1.08997 * 109.47734 * 299.99961 * 3 2 1 32 32 H 1.09007 * 109.47360 * 60.00281 * 3 2 1 33 33 H 1.09005 * 109.47003 * 179.97438 * 3 2 1 34 34 H 0.96999 * 119.99942 * 359.97438 * 6 4 2 35 35 H 1.08992 * 109.47702 * 59.99338 * 7 6 4 36 36 H 1.09007 * 109.46913 * 299.99054 * 7 6 4 37 37 H 1.09002 * 109.46050 * 298.70445 * 10 8 7 38 38 H 1.09004 * 109.46034 * 58.67660 * 10 8 7 39 39 H 1.08996 * 109.49379 * 181.30938 * 11 10 8 40 40 H 1.08994 * 109.49581 * 301.40708 * 11 10 8 41 41 H 1.08999 * 109.58991 * 185.56748 * 12 11 10 42 42 H 1.08998 * 109.59395 * 65.13869 * 12 11 10 43 43 H 1.09000 * 109.47385 * 300.00687 * 16 14 13 44 44 H 1.09004 * 109.46735 * 60.00322 * 16 14 13 45 45 H 0.97006 * 119.99689 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58425 * 186.61021 * 26 13 12 47 47 H 1.08995 * 109.70793 * 66.24640 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0290 6 7 3.3574 -0.8331 1.4440 7 6 3.8457 -1.5242 2.6398 8 6 5.3757 -1.5241 2.6399 9 1 5.7396 -1.9569 1.7080 10 6 5.8865 -2.3520 3.8214 11 6 7.4167 -2.3794 3.8032 12 6 7.9510 -0.9513 3.9471 13 7 7.3503 -0.1140 2.8997 14 6 8.1268 0.6145 2.0734 15 8 7.6187 1.3020 1.2131 16 6 9.6262 0.5750 2.2186 17 16 10.3815 1.6508 0.9743 18 6 12.0844 1.4191 1.3625 19 1 12.3695 0.7615 2.1704 20 6 13.0597 2.0808 0.6292 21 7 12.7122 2.8818 -0.3557 22 14 14.8652 1.8345 1.0404 23 1 14.9891 0.8915 2.1808 24 1 15.5703 1.2766 -0.1415 25 1 15.4715 3.1393 1.4082 26 6 5.8869 -0.0858 2.7704 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.1300 1.4425 0.0005 34 1 3.9877 -0.4645 0.8055 35 1 3.4828 -2.5519 2.6393 36 1 3.4821 -1.0109 3.5301 37 1 5.5424 -1.9048 4.7540 38 1 5.5042 -3.3698 3.7439 39 1 7.7794 -2.9883 4.6313 40 1 7.7617 -2.8038 2.8605 41 1 9.0353 -0.9538 3.8358 42 1 7.6832 -0.5578 4.9276 43 1 9.9042 0.9207 3.2142 44 1 9.9780 -0.4470 2.0775 45 1 13.3938 3.3445 -0.8679 46 1 5.6095 0.4825 1.8827 47 1 5.4489 0.3789 3.6537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171072521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:56 Heat of formation + Delta-G solvation = -97.687703 kcal Electronic energy + Delta-G solvation = -25827.627722 eV Core-core repulsion = 22135.575324 eV Total energy + Delta-G solvation = -3692.052398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.42937 -39.77606 -37.60992 -35.31170 -34.72542 -32.92200 -32.46246 -31.52410 -29.40859 -27.43505 -26.40725 -25.62584 -25.09179 -23.58049 -22.05517 -21.01887 -19.89102 -19.14059 -17.76610 -17.35202 -16.74258 -16.28862 -16.13768 -15.56121 -15.29004 -14.91243 -14.83628 -14.39521 -14.18335 -14.14574 -13.95234 -13.48354 -13.30843 -13.18002 -13.02161 -12.72556 -12.65473 -12.54842 -12.23566 -12.07868 -11.95272 -11.46085 -11.38805 -11.35699 -11.15811 -11.09777 -11.06452 -10.98339 -10.84439 -10.76544 -9.93474 -9.82761 -9.41989 -9.31690 -9.10784 -8.58419 -8.26349 -6.54044 -6.25250 -3.95935 2.43363 2.86476 2.93859 2.98479 3.18943 3.23261 3.28407 3.54694 4.16645 4.35189 4.37005 4.45644 4.51712 4.60524 4.68158 4.76353 4.92457 4.95005 5.08536 5.09860 5.10214 5.25990 5.33423 5.33696 5.38445 5.44526 5.47173 5.53916 5.55283 5.60204 5.62244 5.67057 5.74588 5.80502 5.83236 5.88065 5.88846 5.95331 6.06374 6.08128 6.19642 6.55999 7.24255 7.49143 7.56620 7.99501 8.31905 8.49135 9.20366 10.82218 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002480 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.297016 B =11286.950595 C =12669.940939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.517 3.483 5 O -0.544 6.544 6 N -0.731 5.731 7 C 0.128 3.872 8 C -0.116 4.116 9 H 0.083 0.917 10 C -0.110 4.110 11 C -0.135 4.135 12 C 0.106 3.894 13 N -0.620 5.620 14 C 0.536 3.464 15 O -0.518 6.518 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.118 3.882 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.091 0.909 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 -10.189 6.374 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.204 4.204 4 C 0.304 3.696 5 O -0.421 6.421 6 N -0.383 5.383 7 C 0.003 3.997 8 C -0.136 4.136 9 H 0.102 0.898 10 C -0.148 4.148 11 C -0.173 4.173 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.324 3.676 15 O -0.392 6.392 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.005 4.005 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.751 -9.365 5.539 22.550 hybrid contribution 2.188 -0.863 1.007 2.559 sum -17.563 -10.228 6.546 21.353 Atomic orbital electron populations 1.21607 0.92512 1.02687 1.02141 1.21327 0.98361 0.97549 0.96545 1.21814 1.01677 0.93874 1.03063 1.20737 0.81984 0.79231 0.87672 1.90687 1.55388 1.48789 1.47252 1.46118 1.07393 1.59026 1.25784 1.21345 0.92649 0.97654 0.88014 1.21817 0.93869 0.97161 1.00716 0.89832 1.21474 0.95712 0.99961 0.97643 1.21911 0.95508 0.96797 1.03081 1.21742 0.99210 0.89964 0.90810 1.48083 1.05951 1.46988 1.34540 1.20350 0.88887 0.78307 0.80081 1.90679 1.75040 1.39941 1.33585 1.23552 0.93645 1.06138 1.06764 1.85390 1.02329 1.56330 1.39448 1.22891 0.91145 1.32887 1.21340 0.90896 1.24996 0.99604 0.94493 0.94507 1.70025 1.34060 1.27073 1.19096 0.86120 0.82802 0.78186 0.78407 1.19609 1.20554 1.20543 1.21528 0.80303 0.95550 1.03097 0.91961 0.92001 0.92089 0.88458 0.91210 0.92025 0.91732 0.76050 0.91151 0.91214 0.91340 0.91310 0.90417 0.91163 0.89104 0.91447 0.89274 0.89265 0.92219 0.89072 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.48 37.16 0.32 -0.74 16 2 C -0.12 -0.93 3.26 -91.77 -0.30 -1.23 16 3 C -0.15 -1.08 9.09 37.16 0.34 -0.75 16 4 C 0.52 5.45 7.15 -10.99 -0.08 5.37 16 5 O -0.54 -7.66 15.98 5.56 0.09 -7.57 16 6 N -0.73 -6.58 5.22 -60.30 -0.31 -6.90 16 7 C 0.13 1.10 5.07 -4.05 -0.02 1.08 16 8 C -0.12 -0.99 2.37 -90.50 -0.21 -1.20 16 9 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.11 -0.79 5.17 -26.69 -0.14 -0.93 16 11 C -0.13 -1.07 6.08 -26.63 -0.16 -1.23 16 12 C 0.11 1.06 6.34 -3.73 -0.02 1.04 16 13 N -0.62 -8.16 2.97 -172.78 -0.51 -8.68 16 14 C 0.54 9.70 7.72 -10.99 -0.08 9.62 16 15 O -0.52 -11.21 15.28 5.55 0.08 -11.12 16 16 C -0.15 -2.95 4.50 36.00 0.16 -2.79 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.12 1.30 5.52 -3.70 -0.02 1.28 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 34 H 0.40 3.26 7.12 -40.82 -0.29 2.97 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.63 7.94 -51.92 -0.41 1.22 16 44 H 0.09 1.62 7.69 -51.91 -0.40 1.22 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.09 1.14 6.22 -51.93 -0.32 0.81 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -35.03 390.49 -9.31 -44.34 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.01 Total: 0.06 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.03 Total: -3.16 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.09 Total: -40.65 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.17 Total: -18.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.03 -9.31 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171072521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.346 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds