Wall clock time and date at job start Tue Mar 31 2020 15:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47145 * 120.00043 * 2 1 3 5 5 O 1.21280 * 119.99861 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00110 * 180.02562 * 4 2 1 7 7 C 1.46496 * 120.00222 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47456 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.49848 * 305.06564 * 8 7 6 10 10 C 1.53039 * 109.50100 * 184.99603 * 8 7 6 11 11 C 1.53046 * 109.52798 * 178.68859 * 10 8 7 12 12 C 1.53159 * 109.32667 * 61.37318 * 11 10 8 13 13 N 1.46928 * 108.76987 * 305.35456 * 12 11 10 14 14 C 1.34773 * 120.63179 * 233.59029 * 13 12 11 15 15 O 1.21283 * 119.99742 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00193 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47451 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00140 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00216 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99875 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47018 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46643 * 120.00094 * 22 20 18 25 25 H 1.48499 * 109.46854 * 240.00206 * 22 20 18 26 26 C 1.46931 * 118.73792 * 53.61250 * 13 12 11 27 27 H 1.08997 * 109.47175 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.47000 * 60.00306 * 1 2 3 29 29 H 1.09004 * 109.46673 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47175 * 240.00429 * 2 1 3 31 31 H 1.08997 * 109.47734 * 299.99961 * 3 2 1 32 32 H 1.09007 * 109.47360 * 60.00281 * 3 2 1 33 33 H 1.09005 * 109.47003 * 179.97438 * 3 2 1 34 34 H 0.96999 * 119.99942 * 359.97438 * 6 4 2 35 35 H 1.08992 * 109.47702 * 59.99338 * 7 6 4 36 36 H 1.09007 * 109.46913 * 299.99054 * 7 6 4 37 37 H 1.09002 * 109.46050 * 298.70445 * 10 8 7 38 38 H 1.09004 * 109.46034 * 58.67660 * 10 8 7 39 39 H 1.08996 * 109.49379 * 181.30938 * 11 10 8 40 40 H 1.08994 * 109.49581 * 301.40708 * 11 10 8 41 41 H 1.08999 * 109.58991 * 185.56748 * 12 11 10 42 42 H 1.08998 * 109.59395 * 65.13869 * 12 11 10 43 43 H 1.09000 * 109.47385 * 300.00687 * 16 14 13 44 44 H 1.09004 * 109.46735 * 60.00322 * 16 14 13 45 45 H 0.97006 * 119.99689 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58425 * 186.61021 * 26 13 12 47 47 H 1.08995 * 109.70793 * 66.24640 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0290 6 7 3.3574 -0.8331 1.4440 7 6 3.8457 -1.5242 2.6398 8 6 5.3757 -1.5241 2.6399 9 1 5.7396 -1.9569 1.7080 10 6 5.8865 -2.3520 3.8214 11 6 7.4167 -2.3794 3.8032 12 6 7.9510 -0.9513 3.9471 13 7 7.3503 -0.1140 2.8997 14 6 8.1268 0.6145 2.0734 15 8 7.6187 1.3020 1.2131 16 6 9.6262 0.5750 2.2186 17 16 10.3815 1.6508 0.9743 18 6 12.0844 1.4191 1.3625 19 1 12.3695 0.7615 2.1704 20 6 13.0597 2.0808 0.6292 21 7 12.7122 2.8818 -0.3557 22 14 14.8652 1.8345 1.0404 23 1 14.9891 0.8915 2.1808 24 1 15.5703 1.2766 -0.1415 25 1 15.4715 3.1393 1.4082 26 6 5.8869 -0.0858 2.7704 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.1300 1.4425 0.0005 34 1 3.9877 -0.4645 0.8055 35 1 3.4828 -2.5519 2.6393 36 1 3.4821 -1.0109 3.5301 37 1 5.5424 -1.9048 4.7540 38 1 5.5042 -3.3698 3.7439 39 1 7.7794 -2.9883 4.6313 40 1 7.7617 -2.8038 2.8605 41 1 9.0353 -0.9538 3.8358 42 1 7.6832 -0.5578 4.9276 43 1 9.9042 0.9207 3.2142 44 1 9.9780 -0.4470 2.0775 45 1 13.3938 3.3445 -0.8679 46 1 5.6095 0.4825 1.8827 47 1 5.4489 0.3789 3.6537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171072521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:55 Heat of formation + Delta-G solvation = -120.766066 kcal Electronic energy + Delta-G solvation = -25828.628475 eV Core-core repulsion = 22135.575324 eV Total energy + Delta-G solvation = -3693.053151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39796 -40.78772 -38.71389 -36.22209 -35.45760 -34.58622 -33.88254 -32.37153 -30.80722 -28.09031 -27.72152 -27.15951 -26.17135 -24.32808 -22.81144 -21.91208 -20.74081 -20.33222 -19.48423 -18.31041 -17.96209 -17.18645 -17.06513 -16.88122 -16.63892 -16.40366 -15.92389 -15.65599 -15.16923 -15.06948 -14.87518 -14.52351 -14.44653 -14.16639 -14.14307 -13.85602 -13.51767 -13.43787 -13.19543 -13.15157 -12.95324 -12.91644 -12.87168 -12.56600 -12.15995 -12.08393 -12.01682 -11.88679 -11.76100 -11.68395 -11.56939 -11.15929 -10.86382 -10.76273 -10.25624 -10.12581 -9.67499 -8.66777 -8.34899 -6.12675 1.25881 1.41417 1.46167 1.56618 1.57522 1.60967 2.09252 2.20804 2.27227 2.99518 3.25153 3.58028 3.64437 3.70297 3.74850 3.93538 3.98180 4.03811 4.06489 4.18425 4.26239 4.31608 4.44326 4.46331 4.52316 4.60738 4.68274 4.72770 4.74218 4.82314 4.85790 4.89952 4.92452 5.02098 5.07243 5.12856 5.19705 5.27380 5.29970 5.41113 5.42244 5.45941 5.55039 6.19957 6.28393 6.46996 7.06780 7.13531 7.19309 8.74491 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002480 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.297016 B =11286.950595 C =12669.940939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.513 3.487 5 O -0.583 6.583 6 N -0.726 5.726 7 C 0.131 3.869 8 C -0.101 4.101 9 H 0.076 0.924 10 C -0.107 4.107 11 C -0.128 4.128 12 C 0.095 3.905 13 N -0.606 5.606 14 C 0.533 3.467 15 O -0.564 6.564 16 C -0.124 4.124 17 S -0.151 6.151 18 C -0.544 4.544 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.115 3.885 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.040 -11.920 8.009 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 C -0.201 4.201 4 C 0.301 3.699 5 O -0.463 6.463 6 N -0.377 5.377 7 C 0.007 3.993 8 C -0.121 4.121 9 H 0.094 0.906 10 C -0.145 4.145 11 C -0.166 4.166 12 C -0.026 4.026 13 N -0.339 5.339 14 C 0.321 3.679 15 O -0.442 6.442 16 C -0.275 4.275 17 S 0.077 5.923 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.007 4.007 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.288 -11.132 7.211 23.408 hybrid contribution 1.939 -0.376 0.576 2.057 sum -17.349 -11.508 7.787 22.228 Atomic orbital electron populations 1.21598 0.92460 1.02213 1.02486 1.21376 0.98393 0.97742 0.95979 1.21797 1.01433 0.93477 1.03399 1.21203 0.82010 0.78740 0.87960 1.90665 1.56316 1.50638 1.48731 1.46152 1.07191 1.58457 1.25939 1.21336 0.92513 0.97690 0.87749 1.21680 0.93550 0.95510 1.01326 0.90570 1.21503 0.95198 1.00611 0.97221 1.21890 0.95817 0.95295 1.03643 1.22091 0.99077 0.90924 0.90553 1.48073 1.06622 1.45584 1.33652 1.20104 0.88485 0.78822 0.80536 1.90663 1.75458 1.42285 1.35823 1.23368 0.94541 1.04982 1.04594 1.85554 1.03796 1.59412 1.43574 1.23217 0.91359 1.33013 1.21581 0.89946 1.26119 1.04971 0.93923 0.94149 1.70186 1.35840 1.28289 1.20440 0.84920 0.76000 0.78479 0.78645 1.17964 1.19958 1.19997 1.21694 0.78836 0.97267 1.02936 0.93317 0.89915 0.92967 0.86645 0.89717 0.92858 0.92045 0.75465 0.90872 0.91416 0.90121 0.89732 0.87841 0.92198 0.89465 0.89250 0.87658 0.87543 0.92007 0.90875 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.48 71.98 0.61 -1.39 16 2 C -0.11 -1.74 3.26 -11.54 -0.04 -1.78 16 3 C -0.14 -2.03 9.09 71.98 0.65 -1.37 16 4 C 0.51 10.66 7.15 87.66 0.63 11.29 16 5 O -0.58 -16.48 15.98 -3.03 -0.05 -16.53 16 6 N -0.73 -12.65 5.22 -463.08 -2.42 -15.06 16 7 C 0.13 2.09 5.07 86.38 0.44 2.53 16 8 C -0.10 -1.53 2.37 -10.71 -0.03 -1.56 16 9 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 10 C -0.11 -1.20 5.17 30.62 0.16 -1.04 16 11 C -0.13 -1.60 6.08 30.66 0.19 -1.41 16 12 C 0.10 1.64 6.34 86.35 0.55 2.19 16 13 N -0.61 -15.07 2.97 -818.95 -2.43 -17.51 16 14 C 0.53 19.23 7.72 87.66 0.68 19.91 16 15 O -0.56 -25.10 15.28 -3.04 -0.05 -25.14 16 16 C -0.12 -4.81 4.50 71.23 0.32 -4.49 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.54 -30.55 9.50 67.95 0.65 -29.91 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 22 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.12 2.39 5.52 86.36 0.48 2.87 16 27 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.90 7.56 -2.38 -0.02 0.89 16 34 H 0.41 6.45 7.12 -92.71 -0.66 5.79 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.59 5.93 -2.39 -0.01 1.57 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 3.73 7.94 -2.40 -0.02 3.71 16 44 H 0.11 3.74 7.69 -2.39 -0.02 3.72 16 45 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 46 H 0.07 1.82 6.22 -2.39 -0.01 1.81 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.69 390.49 2.24 -76.45 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.29 Total: 20.23 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.74 Total: -2.96 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -4.57 Total: -87.62 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.67 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -78.69 2.24 -76.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171072521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.313 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds