Wall clock time and date at job start Tue Mar 31 2020 15:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 C 1.50698 * 109.46953 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99856 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99939 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99827 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46783 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.52614 * 304.92282 * 8 7 6 10 10 C 1.53036 * 109.49490 * 184.83616 * 8 7 6 11 11 C 1.53045 * 109.53562 * 178.68468 * 10 8 7 12 12 C 1.52761 * 109.38221 * 61.24591 * 11 10 8 13 13 N 1.46928 * 109.00629 * 305.58631 * 12 11 10 14 14 C 1.34779 * 120.62856 * 233.58929 * 13 12 11 15 15 O 1.21282 * 119.99922 * 179.72064 * 14 13 12 16 16 C 1.50699 * 120.00037 * 359.71632 * 14 13 12 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.46924 * 118.73884 * 53.31105 * 13 12 11 27 27 H 1.09004 * 109.46768 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47092 * 299.99585 * 1 2 3 29 29 H 1.08993 * 109.47081 * 60.00160 * 1 2 3 30 30 H 1.08998 * 109.47148 * 239.99452 * 2 1 3 31 31 H 1.09001 * 109.46987 * 119.99612 * 2 1 3 32 32 H 1.09004 * 109.46999 * 59.99906 * 3 2 1 33 33 H 1.09001 * 109.46962 * 299.99627 * 3 2 1 34 34 H 0.96995 * 119.99602 * 0.02562 * 6 4 3 35 35 H 1.09005 * 109.46934 * 59.99865 * 7 6 4 36 36 H 1.09001 * 109.47095 * 299.99642 * 7 6 4 37 37 H 1.08997 * 109.46027 * 298.70621 * 10 8 7 38 38 H 1.09006 * 109.46031 * 58.68033 * 10 8 7 39 39 H 1.09002 * 109.49420 * 181.31730 * 11 10 8 40 40 H 1.08994 * 109.49691 * 301.38179 * 11 10 8 41 41 H 1.09002 * 109.51130 * 185.70593 * 12 11 10 42 42 H 1.08996 * 109.43798 * 65.41702 * 12 11 10 43 43 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 44 44 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 45 45 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.58875 * 66.43242 * 26 13 12 47 47 H 1.09007 * 109.58456 * 186.85989 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3922 0.0015 6 7 4.2208 2.6098 0.0002 7 6 5.6859 2.6097 0.0003 8 6 6.1958 4.0523 -0.0009 9 1 5.7628 4.5911 -0.8437 10 6 7.7213 4.0546 -0.1225 11 6 8.2298 5.4977 -0.1567 12 6 7.8471 6.2011 1.1442 13 7 6.3972 6.0764 1.3470 14 6 5.6372 7.1690 1.5595 15 8 4.4407 7.0533 1.7205 16 6 6.2741 8.5342 1.5973 17 16 5.0015 9.7854 1.8992 18 6 5.9955 11.2404 1.8933 19 1 7.0609 11.1658 1.7329 20 6 5.4093 12.4821 2.0958 21 7 4.1109 12.5729 2.2918 22 14 6.4629 14.0246 2.0888 23 1 7.1382 14.1569 0.7728 24 1 5.6036 15.2121 2.3265 25 1 7.4848 13.9309 3.1623 26 6 5.7908 4.7387 1.3074 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7358 3.4497 -0.0001 35 1 6.0492 2.0955 -0.8895 36 1 6.0492 2.0963 0.8905 37 1 8.1546 3.5371 0.7334 38 1 8.0132 3.5450 -1.0408 39 1 9.3143 5.4987 -0.2668 40 1 7.7782 6.0226 -0.9984 41 1 8.1180 7.2550 1.0815 42 1 8.3738 5.7351 1.9770 43 1 6.7616 8.7343 0.6431 44 1 7.0136 8.5682 2.3974 45 1 3.7012 13.4407 2.4330 46 1 6.1465 4.1512 2.1537 47 1 4.7054 4.8282 1.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171075349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:06 Heat of formation + Delta-G solvation = -123.401370 kcal Electronic energy + Delta-G solvation = -25441.196897 eV Core-core repulsion = 21748.029471 eV Total energy + Delta-G solvation = -3693.167427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36857 -40.66452 -38.71088 -36.25899 -35.25384 -34.58457 -33.95354 -32.44991 -30.89977 -29.09630 -27.70427 -26.60342 -26.17510 -23.45227 -22.47646 -21.92232 -21.04582 -20.35887 -19.48219 -18.28383 -17.86051 -17.23764 -17.01024 -16.87909 -16.78909 -16.57598 -15.96638 -15.70691 -15.19133 -15.08365 -15.00747 -14.53101 -14.44532 -14.20469 -14.14175 -13.96135 -13.74306 -13.43967 -13.16294 -13.01399 -12.86641 -12.81930 -12.67500 -12.58995 -12.14456 -12.04857 -11.88972 -11.77935 -11.70846 -11.64230 -11.57729 -11.12710 -10.89314 -10.83241 -10.26390 -10.11624 -9.67720 -8.66792 -8.34311 -6.12500 1.25682 1.44003 1.45989 1.55302 1.56818 1.63291 2.09239 2.22847 2.27782 2.99748 3.25152 3.58430 3.65718 3.74875 3.79265 3.93927 4.02095 4.06953 4.10913 4.19031 4.26241 4.31922 4.44906 4.52397 4.55123 4.60853 4.66770 4.70521 4.73961 4.76812 4.82526 4.89621 4.91722 5.03072 5.12671 5.19722 5.21501 5.26605 5.39587 5.41748 5.43503 5.48204 5.55114 6.19671 6.28210 6.49114 7.06900 7.13335 7.21496 8.74547 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002323 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.524711 B =12050.344447 C =13581.263555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.509 3.491 5 O -0.586 6.586 6 N -0.728 5.728 7 C 0.131 3.869 8 C -0.101 4.101 9 H 0.076 0.924 10 C -0.108 4.108 11 C -0.129 4.129 12 C 0.096 3.904 13 N -0.606 5.606 14 C 0.533 3.467 15 O -0.564 6.564 16 C -0.124 4.124 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.115 3.885 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.410 0.590 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -21.757 -6.580 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.180 4.180 4 C 0.297 3.703 5 O -0.466 6.466 6 N -0.380 5.380 7 C 0.007 3.993 8 C -0.121 4.121 9 H 0.094 0.906 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.026 4.026 13 N -0.340 5.340 14 C 0.321 3.679 15 O -0.443 6.443 16 C -0.275 4.275 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.187 1.187 26 C -0.008 4.008 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.391 -22.565 -6.302 23.836 hybrid contribution 1.313 1.591 -0.028 2.064 sum 5.705 -20.973 -6.330 22.638 Atomic orbital electron populations 1.21774 0.93990 1.02403 1.02565 1.21239 0.96508 0.94650 1.02150 1.21799 0.89616 1.00365 1.06219 1.21274 0.91552 0.82993 0.74486 1.90672 1.71628 1.32711 1.51627 1.46173 1.07812 1.09088 1.74902 1.21322 0.79517 0.95890 1.02535 1.21677 0.98498 0.94322 0.97560 0.90565 1.21503 0.92098 0.96975 1.03984 1.21825 1.02888 0.95567 0.96408 1.22002 0.78288 1.02891 0.99454 1.48079 1.09200 1.05543 1.71133 1.20103 0.86406 0.85970 0.75448 1.90663 1.16483 1.86579 1.50548 1.23372 1.03202 0.94830 1.06113 1.85551 1.13351 0.99111 1.94285 1.23159 0.96295 0.92820 1.57125 0.89920 1.26118 0.96676 1.02577 0.93764 1.70169 1.11670 1.26382 1.46496 0.85023 0.77784 0.75847 0.79473 1.18594 1.20473 1.18671 1.21708 0.99185 0.81796 0.98073 0.92115 0.92081 0.91837 0.92520 0.92751 0.87324 0.86946 0.75345 0.90960 0.91441 0.90125 0.89747 0.87807 0.92224 0.89473 0.89275 0.87526 0.87649 0.91996 0.90322 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.11 -1.67 5.22 30.60 0.16 -1.51 16 3 C -0.14 -1.99 5.70 29.85 0.17 -1.82 16 4 C 0.51 10.24 7.83 87.66 0.69 10.93 16 5 O -0.59 -16.34 15.98 -3.04 -0.05 -16.39 16 6 N -0.73 -12.28 5.33 -463.04 -2.47 -14.74 16 7 C 0.13 2.07 5.07 86.38 0.44 2.50 16 8 C -0.10 -1.52 2.38 -10.72 -0.03 -1.54 16 9 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 10 C -0.11 -1.20 5.17 30.62 0.16 -1.04 16 11 C -0.13 -1.60 6.06 30.53 0.19 -1.42 16 12 C 0.10 1.64 6.31 86.22 0.54 2.18 16 13 N -0.61 -15.09 2.98 -819.73 -2.44 -17.53 16 14 C 0.53 19.26 7.72 87.66 0.68 19.94 16 15 O -0.56 -25.16 15.27 -3.04 -0.05 -25.21 16 16 C -0.12 -4.83 4.50 71.24 0.32 -4.51 16 17 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 18 C -0.55 -30.71 9.50 67.95 0.65 -30.06 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.36 13.22 21.65 0.29 -55.08 16 22 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 C 0.11 2.37 5.52 86.36 0.48 2.85 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 31 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 6.10 7.70 -92.71 -0.71 5.39 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.58 5.93 -2.39 -0.01 1.57 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 3.75 7.68 -2.39 -0.02 3.73 16 44 H 0.11 3.73 7.95 -2.40 -0.02 3.71 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.83 6.21 -2.38 -0.01 1.82 16 Total: -1.00 -78.99 392.39 2.00 -76.99 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.24 Total: 19.72 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.62 Total: -3.30 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -4.62 Total: -87.35 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.09 Total: -41.60 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -78.99 2.00 -76.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171075349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.410 kcal (2) G-P(sol) polarization free energy of solvation -78.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds