Wall clock time and date at job start Tue Mar 31 2020 15:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.49806 * 54.92934 * 8 7 6 10 10 C 1.53042 * 109.50010 * 174.99973 * 8 7 6 11 11 C 1.53041 * 109.53831 * 181.31871 * 10 8 7 12 12 C 1.53193 * 109.31243 * 298.63263 * 11 10 8 13 13 N 1.46929 * 108.77407 * 54.63597 * 12 11 10 14 14 C 1.34772 * 120.63053 * 126.41507 * 13 12 11 15 15 O 1.21276 * 120.00377 * 179.97438 * 14 13 12 16 16 C 1.50705 * 120.00165 * 359.97438 * 14 13 12 17 17 S 1.80991 * 109.47364 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00028 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99897 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99724 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47293 * 90.00046 * 22 20 18 24 24 H 1.48507 * 109.46785 * 209.99967 * 22 20 18 25 25 H 1.48504 * 109.47112 * 329.99659 * 22 20 18 26 26 C 1.46927 * 118.73881 * 306.39061 * 13 12 11 27 27 H 1.08998 * 109.47061 * 300.00668 * 1 2 3 28 28 H 1.09002 * 109.46668 * 60.00355 * 1 2 3 29 29 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46812 * 239.99783 * 2 1 3 31 31 H 1.09002 * 109.46935 * 120.00125 * 2 1 3 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 34 34 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 36 36 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 37 37 H 1.09000 * 109.45614 * 301.33756 * 10 8 7 38 38 H 1.08997 * 109.46023 * 61.31271 * 10 8 7 39 39 H 1.08997 * 109.49748 * 58.58543 * 11 10 8 40 40 H 1.08995 * 109.49528 * 178.68490 * 11 10 8 41 41 H 1.09003 * 109.58890 * 174.42261 * 12 11 10 42 42 H 1.08998 * 109.58577 * 294.85094 * 12 11 10 43 43 H 1.08996 * 109.47384 * 300.00750 * 16 14 13 44 44 H 1.09006 * 109.47095 * 60.00160 * 16 14 13 45 45 H 0.96999 * 119.99709 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58381 * 293.82040 * 26 13 12 47 47 H 1.09002 * 109.58329 * 173.39305 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3920 0.0015 6 7 4.2210 2.6095 0.0013 7 6 5.6860 2.6095 0.0025 8 6 6.1961 4.0519 0.0023 9 1 5.7601 4.5921 0.8427 10 6 7.7212 4.0545 0.1293 11 6 8.2296 5.4976 0.1623 12 6 7.8523 6.1978 -1.1469 13 7 6.4023 6.0733 -1.3489 14 6 5.6433 7.1653 -1.5674 15 8 4.4475 7.0493 -1.7332 16 6 6.2803 8.5305 -1.6058 17 16 5.0090 9.7811 -1.9147 18 6 6.0032 11.2358 -1.9098 19 1 7.0681 11.1615 -1.7461 20 6 5.4177 12.4774 -2.1163 21 7 6.1604 13.5642 -2.1121 22 14 3.5756 12.6059 -2.3987 23 1 2.8855 12.7740 -1.0947 24 1 3.2883 13.7770 -3.2655 25 1 3.0888 11.3689 -3.0606 26 6 5.7957 4.7357 -1.3088 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7361 3.4496 0.0009 35 1 6.0486 2.0956 0.8927 36 1 6.0501 2.0957 -0.8873 37 1 8.0098 3.5466 1.0496 38 1 8.1575 3.5355 -0.7241 39 1 7.7746 6.0245 1.0010 40 1 9.3136 5.4988 0.2763 41 1 8.1241 7.2518 -1.0891 42 1 8.3787 5.7276 -1.9776 43 1 6.7639 8.7328 -0.6501 44 1 7.0233 8.5626 -2.4028 45 1 5.7512 14.4317 -2.2561 46 1 6.1544 4.1464 -2.1527 47 1 4.7105 4.8251 -1.3577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171075355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:14 Heat of formation + Delta-G solvation = -100.024003 kcal Electronic energy + Delta-G solvation = -25497.162372 eV Core-core repulsion = 21805.008664 eV Total energy + Delta-G solvation = -3692.153708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43339 -39.75907 -37.69471 -35.43431 -34.61497 -33.06159 -32.47000 -31.65573 -29.66944 -28.43381 -25.93828 -25.69923 -25.21602 -22.76978 -21.84157 -21.11009 -20.27575 -19.23269 -17.78134 -17.28573 -16.82694 -16.40695 -16.25471 -15.89486 -15.43526 -15.07577 -14.92946 -14.48565 -14.38699 -14.20515 -13.87624 -13.53656 -13.42948 -13.37297 -13.22448 -13.00386 -12.80522 -12.38004 -12.13459 -12.09093 -12.07284 -11.51719 -11.44925 -11.30530 -11.20819 -11.07163 -11.04939 -11.03460 -10.89015 -10.61930 -10.07560 -9.89274 -9.54033 -9.36904 -9.03808 -8.67320 -8.53350 -6.96079 -6.32198 -4.04301 2.39221 2.64858 2.85415 2.89338 3.13699 3.30046 3.47206 3.54619 4.29208 4.30610 4.35707 4.43120 4.47073 4.56362 4.66714 4.67070 4.72075 4.89070 5.02138 5.06759 5.07855 5.10379 5.16105 5.23380 5.29496 5.29961 5.35818 5.39420 5.45238 5.55684 5.57216 5.67628 5.70607 5.72652 5.76245 5.81339 5.82072 5.94168 5.97539 6.03256 6.14723 6.46835 7.19356 7.38613 7.90742 7.95026 8.35857 8.38095 9.13864 10.76949 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.002520 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.733933 B =11110.321097 C =12921.537899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.512 3.488 5 O -0.545 6.545 6 N -0.733 5.733 7 C 0.127 3.873 8 C -0.116 4.116 9 H 0.083 0.917 10 C -0.110 4.110 11 C -0.135 4.135 12 C 0.105 3.895 13 N -0.618 5.618 14 C 0.534 3.466 15 O -0.520 6.520 16 C -0.122 4.122 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.118 3.882 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.066 0.934 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -24.274 5.558 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.184 4.184 4 C 0.299 3.701 5 O -0.422 6.422 6 N -0.386 5.386 7 C 0.003 3.997 8 C -0.135 4.135 9 H 0.102 0.898 10 C -0.148 4.148 11 C -0.173 4.173 12 C -0.019 4.019 13 N -0.354 5.354 14 C 0.322 3.678 15 O -0.395 6.395 16 C -0.272 4.272 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.249 -24.984 5.280 25.635 hybrid contribution 0.657 1.032 0.118 1.229 sum -1.592 -23.952 5.398 24.604 Atomic orbital electron populations 1.21803 0.95420 1.01963 1.01949 1.21271 0.95329 0.94609 1.03444 1.21751 0.91581 1.00306 1.04714 1.20796 0.90462 0.83409 0.75405 1.90696 1.70663 1.31344 1.49491 1.46138 1.07488 1.09085 1.75844 1.21345 0.79687 0.96020 1.02621 1.21813 0.97276 0.95032 0.99422 0.89823 1.21478 0.93588 0.97131 1.02640 1.21917 1.01487 0.95724 0.98177 1.21787 0.80304 1.02459 0.97306 1.48055 1.08130 1.06122 1.73060 1.20316 0.86799 0.85434 0.75220 1.90675 1.14673 1.86029 1.48139 1.23311 1.03852 0.94521 1.05532 1.84780 1.12737 0.99779 1.94347 1.22301 0.96884 0.90677 1.57023 0.89398 1.24722 0.98733 0.94536 0.93352 1.69938 1.36064 0.98203 1.47390 0.86730 0.85120 0.80144 0.79817 1.19223 1.19936 1.15934 1.21554 1.00058 0.82720 0.96143 0.92628 0.92561 0.92420 0.91286 0.91345 0.88805 0.88655 0.76076 0.91109 0.91203 0.91248 0.91300 0.91130 0.90282 0.89002 0.91267 0.88541 0.88503 0.91922 0.91560 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 3 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 4 C 0.51 5.05 7.83 -10.99 -0.09 4.96 16 5 O -0.54 -7.37 15.98 5.56 0.09 -7.28 16 6 N -0.73 -6.11 5.33 -60.29 -0.32 -6.44 16 7 C 0.13 1.04 5.07 -4.04 -0.02 1.02 16 8 C -0.12 -0.92 2.37 -90.50 -0.21 -1.14 16 9 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 10 C -0.11 -0.75 5.17 -26.69 -0.14 -0.89 16 11 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 12 C 0.10 1.00 6.34 -3.71 -0.02 0.98 16 13 N -0.62 -7.71 2.97 -172.76 -0.51 -8.23 16 14 C 0.53 9.17 7.72 -10.99 -0.08 9.09 16 15 O -0.52 -10.66 15.27 5.56 0.08 -10.57 16 16 C -0.12 -2.29 4.50 36.01 0.16 -2.12 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.75 10.04 30.94 0.31 -14.43 16 19 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 20 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 21 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 22 Si 0.86 21.47 27.74 -169.99 -4.72 16.75 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 26 C 0.12 1.22 5.52 -3.71 -0.02 1.20 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 2.90 7.71 -40.82 -0.31 2.59 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.92 5.93 -51.93 -0.31 0.62 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.69 7.69 -51.92 -0.40 1.29 16 44 H 0.10 1.71 7.94 -51.91 -0.41 1.29 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.07 6.22 -51.93 -0.32 0.75 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -34.80 389.76 -9.12 -43.92 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.09 Total: -0.53 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.30 Total: -2.55 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.06 Total: -40.07 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.80 -9.12 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171075355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.103 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds