Wall clock time and date at job start Tue Mar 31 2020 15:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.49806 * 54.92934 * 8 7 6 10 10 C 1.53042 * 109.50010 * 174.99973 * 8 7 6 11 11 C 1.53041 * 109.53831 * 181.31871 * 10 8 7 12 12 C 1.53193 * 109.31243 * 298.63263 * 11 10 8 13 13 N 1.46929 * 108.77407 * 54.63597 * 12 11 10 14 14 C 1.34772 * 120.63053 * 126.41507 * 13 12 11 15 15 O 1.21276 * 120.00377 * 179.97438 * 14 13 12 16 16 C 1.50705 * 120.00165 * 359.97438 * 14 13 12 17 17 S 1.80991 * 109.47364 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00028 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99897 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99724 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47293 * 90.00046 * 22 20 18 24 24 H 1.48507 * 109.46785 * 209.99967 * 22 20 18 25 25 H 1.48504 * 109.47112 * 329.99659 * 22 20 18 26 26 C 1.46927 * 118.73881 * 306.39061 * 13 12 11 27 27 H 1.08998 * 109.47061 * 300.00668 * 1 2 3 28 28 H 1.09002 * 109.46668 * 60.00355 * 1 2 3 29 29 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46812 * 239.99783 * 2 1 3 31 31 H 1.09002 * 109.46935 * 120.00125 * 2 1 3 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 34 34 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 36 36 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 37 37 H 1.09000 * 109.45614 * 301.33756 * 10 8 7 38 38 H 1.08997 * 109.46023 * 61.31271 * 10 8 7 39 39 H 1.08997 * 109.49748 * 58.58543 * 11 10 8 40 40 H 1.08995 * 109.49528 * 178.68490 * 11 10 8 41 41 H 1.09003 * 109.58890 * 174.42261 * 12 11 10 42 42 H 1.08998 * 109.58577 * 294.85094 * 12 11 10 43 43 H 1.08996 * 109.47384 * 300.00750 * 16 14 13 44 44 H 1.09006 * 109.47095 * 60.00160 * 16 14 13 45 45 H 0.96999 * 119.99709 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58381 * 293.82040 * 26 13 12 47 47 H 1.09002 * 109.58329 * 173.39305 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3920 0.0015 6 7 4.2210 2.6095 0.0013 7 6 5.6860 2.6095 0.0025 8 6 6.1961 4.0519 0.0023 9 1 5.7601 4.5921 0.8427 10 6 7.7212 4.0545 0.1293 11 6 8.2296 5.4976 0.1623 12 6 7.8523 6.1978 -1.1469 13 7 6.4023 6.0733 -1.3489 14 6 5.6433 7.1653 -1.5674 15 8 4.4475 7.0493 -1.7332 16 6 6.2803 8.5305 -1.6058 17 16 5.0090 9.7811 -1.9147 18 6 6.0032 11.2358 -1.9098 19 1 7.0681 11.1615 -1.7461 20 6 5.4177 12.4774 -2.1163 21 7 6.1604 13.5642 -2.1121 22 14 3.5756 12.6059 -2.3987 23 1 2.8855 12.7740 -1.0947 24 1 3.2883 13.7770 -3.2655 25 1 3.0888 11.3689 -3.0606 26 6 5.7957 4.7357 -1.3088 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7361 3.4496 0.0009 35 1 6.0486 2.0956 0.8927 36 1 6.0501 2.0957 -0.8873 37 1 8.0098 3.5466 1.0496 38 1 8.1575 3.5355 -0.7241 39 1 7.7746 6.0245 1.0010 40 1 9.3136 5.4988 0.2763 41 1 8.1241 7.2518 -1.0891 42 1 8.3787 5.7276 -1.9776 43 1 6.7639 8.7328 -0.6501 44 1 7.0233 8.5626 -2.4028 45 1 5.7512 14.4317 -2.2561 46 1 6.1544 4.1464 -2.1527 47 1 4.7105 4.8251 -1.3577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171075355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:13 Heat of formation + Delta-G solvation = -122.938256 kcal Electronic energy + Delta-G solvation = -25498.156008 eV Core-core repulsion = 21805.008664 eV Total energy + Delta-G solvation = -3693.147344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39221 -40.67532 -38.73005 -36.26547 -35.25466 -34.67149 -33.97350 -32.44877 -30.96519 -29.09936 -27.87615 -26.61835 -26.21567 -23.46341 -22.48123 -21.94438 -21.05895 -20.40519 -19.51041 -18.32709 -17.87835 -17.28670 -17.08901 -17.00240 -16.76832 -16.62423 -15.89777 -15.70615 -15.20728 -15.08946 -14.97164 -14.91270 -14.53018 -14.22601 -14.15267 -13.96331 -13.75261 -13.51078 -13.33851 -13.05153 -13.01441 -12.84470 -12.67707 -12.56593 -12.13921 -12.04878 -11.90314 -11.86279 -11.76777 -11.64248 -11.58471 -11.16991 -10.92683 -10.85207 -10.51777 -10.11595 -9.70405 -8.99902 -8.51411 -6.22314 0.97769 1.31521 1.46104 1.51088 1.54409 1.63614 2.05605 2.22742 2.25012 2.68150 2.86801 3.48980 3.63949 3.73376 3.78362 3.90482 4.01838 4.05101 4.10933 4.16470 4.19890 4.31975 4.40786 4.51465 4.54983 4.60151 4.66370 4.70200 4.73935 4.76801 4.81831 4.89128 4.91422 5.01914 5.12661 5.19481 5.21595 5.26536 5.39382 5.43184 5.48126 5.51676 5.70743 6.11448 6.24042 6.49715 6.93678 7.07080 7.22096 8.60810 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.002520 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.733933 B =11110.321097 C =12921.537899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.508 3.492 5 O -0.586 6.586 6 N -0.727 5.727 7 C 0.131 3.869 8 C -0.101 4.101 9 H 0.077 0.923 10 C -0.108 4.108 11 C -0.129 4.129 12 C 0.095 3.905 13 N -0.604 5.604 14 C 0.535 3.465 15 O -0.561 6.561 16 C -0.107 4.107 17 S -0.174 6.174 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.236 1.236 26 C 0.115 3.885 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.277 0.723 46 H 0.079 0.921 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -25.543 5.914 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.179 4.179 4 C 0.297 3.703 5 O -0.467 6.467 6 N -0.379 5.379 7 C 0.007 3.993 8 C -0.120 4.120 9 H 0.096 0.904 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.027 4.027 13 N -0.338 5.338 14 C 0.322 3.678 15 O -0.439 6.439 16 C -0.258 4.258 17 S 0.052 5.948 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.160 1.160 26 C -0.007 4.007 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.263 -26.256 5.647 26.952 hybrid contribution 0.835 1.311 0.034 1.555 sum -1.428 -24.945 5.681 25.623 Atomic orbital electron populations 1.21775 0.93988 1.02384 1.02582 1.21241 0.96508 0.94727 1.02120 1.21794 0.89575 1.00305 1.06259 1.21283 0.91567 0.83002 0.74489 1.90676 1.71644 1.32758 1.51610 1.46154 1.07760 1.09086 1.74916 1.21315 0.79554 0.95908 1.02512 1.21673 0.98383 0.94347 0.97640 0.90421 1.21503 0.92248 0.96894 1.03954 1.21894 1.02847 0.95630 0.96331 1.22105 0.78323 1.02858 0.99447 1.48054 1.09194 1.05658 1.70866 1.19979 0.86428 0.85770 0.75633 1.90660 1.16192 1.86500 1.50576 1.23282 1.02024 0.93788 1.06674 1.84678 1.15191 1.00235 1.94679 1.22448 0.96226 0.92504 1.56397 0.91970 1.25577 1.02963 0.94327 0.93213 1.70017 1.37976 0.98894 1.48524 0.85862 0.79998 0.80398 0.80085 1.18656 1.18462 1.16002 1.21729 0.99308 0.81626 0.98038 0.91825 0.92029 0.92185 0.92777 0.92589 0.86918 0.87223 0.75280 0.91049 0.91470 0.89824 0.90156 0.92120 0.88029 0.89582 0.89157 0.87178 0.87249 0.91389 0.90250 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.11 -1.58 5.22 30.60 0.16 -1.42 16 3 C -0.14 -1.80 5.70 29.85 0.17 -1.63 16 4 C 0.51 9.62 7.83 87.66 0.69 10.31 16 5 O -0.59 -15.82 15.98 -3.03 -0.05 -15.87 16 6 N -0.73 -11.21 5.33 -463.06 -2.47 -13.68 16 7 C 0.13 1.91 5.07 86.38 0.44 2.35 16 8 C -0.10 -1.38 2.37 -10.72 -0.03 -1.41 16 9 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 10 C -0.11 -1.12 5.17 30.62 0.16 -0.96 16 11 C -0.13 -1.54 6.08 30.67 0.19 -1.36 16 12 C 0.09 1.55 6.34 86.36 0.55 2.10 16 13 N -0.60 -13.91 2.97 -818.89 -2.43 -16.35 16 14 C 0.53 17.79 7.72 87.66 0.68 18.46 16 15 O -0.56 -22.72 15.27 -3.02 -0.05 -22.77 16 16 C -0.11 -3.93 4.50 71.24 0.32 -3.61 16 17 S -0.17 -8.63 18.55 -56.49 -1.05 -9.68 16 18 C -0.53 -30.25 10.04 67.96 0.68 -29.57 16 19 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 20 C 0.04 2.59 5.50 84.86 0.47 3.05 16 21 N -0.92 -55.12 13.97 21.65 0.30 -54.82 16 22 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 23 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.24 -11.40 6.74 99.48 0.67 -10.73 16 26 C 0.12 2.16 5.52 86.36 0.48 2.64 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.41 5.34 7.71 -92.71 -0.71 4.63 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 1.54 5.93 -2.39 -0.01 1.52 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 3.74 7.69 -2.40 -0.02 3.72 16 44 H 0.11 3.74 7.94 -2.39 -0.02 3.72 16 45 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.72 6.22 -2.39 -0.01 1.70 16 Total: -1.00 -76.28 389.76 2.02 -74.27 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.20 Total: 14.59 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.66 Total: -1.93 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -4.60 Total: -84.84 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.09 Total: -38.64 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -76.28 2.02 -74.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171075355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.670 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds