Wall clock time and date at job start Tue Mar 31 2020 16:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 N 1.46501 * 109.47348 * 120.00096 * 2 1 3 5 5 C 1.34775 * 120.00047 * 155.00150 * 4 2 1 6 6 O 1.21622 * 120.00150 * 0.02562 * 5 4 2 7 7 C 1.47260 * 119.99977 * 179.97438 * 5 4 2 8 8 C 1.43206 * 119.99536 * 359.97438 * 7 5 4 9 9 N 5.00817 * 98.36831 * 114.82921 * 2 1 3 10 10 C 1.36587 * 120.00140 * 180.02562 * 7 5 4 11 11 C 1.46737 * 119.99991 * 186.79290 * 10 7 5 12 12 C 1.40098 * 120.16634 * 209.82981 * 11 10 7 13 13 C 1.37833 * 119.91715 * 180.02562 * 12 11 10 14 14 C 1.38382 * 120.25327 * 359.71666 * 13 12 11 15 15 C 1.38902 * 120.33328 * 0.56203 * 14 13 12 16 16 O 1.35909 * 119.95846 * 179.71661 * 15 14 13 17 17 C 1.42896 * 117.00362 * 359.72970 * 16 15 14 18 18 C 1.52992 * 109.47599 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47503 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99861 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00441 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99736 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00322 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47132 * 60.00126 * 23 21 19 25 25 H 1.48502 * 109.47307 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47321 * 299.99927 * 23 21 19 27 27 C 1.38360 * 120.07780 * 359.44092 * 15 14 13 28 28 H 1.08999 * 109.47321 * 299.99522 * 1 2 3 29 29 H 1.09002 * 109.47404 * 60.00154 * 1 2 3 30 30 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47745 * 240.00147 * 2 1 3 32 32 H 1.08995 * 109.47576 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00526 * 3 2 1 34 34 H 1.09007 * 109.46824 * 60.00029 * 3 2 1 35 35 H 0.96999 * 120.00042 * 334.99538 * 4 2 1 36 36 H 1.07996 * 119.99770 * 6.78827 * 10 7 5 37 37 H 1.08001 * 120.03906 * 359.97438 * 12 11 10 38 38 H 1.07996 * 119.87389 * 180.02562 * 13 12 11 39 39 H 1.07995 * 119.83232 * 180.27299 * 14 13 12 40 40 H 1.09009 * 109.46395 * 299.99883 * 17 16 15 41 41 H 1.09007 * 109.47433 * 59.99295 * 17 16 15 42 42 H 1.08997 * 109.46945 * 299.99860 * 18 17 16 43 43 H 1.09007 * 109.47228 * 59.99263 * 18 17 16 44 44 H 0.96998 * 119.99744 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.12288 * 180.25289 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1943 6 8 3.9378 -1.1984 0.1998 7 6 3.7314 -1.9528 2.3969 8 6 2.9108 -2.0228 3.5684 9 7 2.2588 -2.0806 4.4968 10 6 4.9700 -2.5285 2.3952 11 6 5.4008 -3.3457 3.5354 12 6 6.7580 -3.4209 3.8748 13 6 7.1569 -4.1904 4.9464 14 6 6.2212 -4.8851 5.6927 15 6 4.8736 -4.8226 5.3620 16 8 3.9618 -5.5125 6.0967 17 6 4.4605 -6.2851 7.1904 18 6 3.2958 -6.9847 7.8937 19 6 3.8219 -7.8001 9.0467 20 1 4.8811 -7.8172 9.2571 21 6 2.9510 -8.5234 9.8337 22 7 1.6611 -8.5021 9.5778 23 14 3.6030 -9.5334 11.2633 24 1 4.2975 -8.6397 12.2248 25 1 2.4725 -10.2126 11.9459 26 1 4.5575 -10.5515 10.7556 27 6 4.4578 -4.0544 4.2890 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.4623 -0.7387 1.9895 36 1 5.6323 -2.3824 1.5548 37 1 7.4907 -2.8772 3.2970 38 1 8.2032 -4.2476 5.2077 39 1 6.5409 -5.4824 6.5337 40 1 5.1618 -7.0319 6.8176 41 1 4.9697 -5.6291 7.8965 42 1 2.5950 -6.2378 8.2664 43 1 2.7863 -7.6407 7.1878 44 1 1.0484 -9.0113 10.1313 45 1 3.4097 -4.0020 4.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171148560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:01 Heat of formation + Delta-G solvation = -15.706866 kcal Electronic energy + Delta-G solvation = -26002.346309 eV Core-core repulsion = 22178.404916 eV Total energy + Delta-G solvation = -3823.941394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.49100 -39.88394 -37.87392 -36.72423 -36.40730 -33.98139 -33.40576 -32.05051 -30.99864 -29.93092 -29.34330 -27.62949 -25.54530 -24.77527 -22.92836 -22.02521 -21.80292 -21.12445 -20.47704 -19.03106 -17.53725 -16.71940 -16.41928 -16.07117 -15.89655 -15.49589 -15.41284 -15.35091 -14.76404 -14.55788 -14.52269 -14.28767 -13.76953 -13.47967 -13.25533 -13.12719 -12.99881 -12.82645 -12.71329 -12.58148 -12.45062 -12.35105 -11.80642 -11.79171 -11.66598 -11.43991 -11.36853 -10.94110 -10.84881 -10.59161 -10.40903 -10.21095 -9.92976 -9.71529 -9.52475 -9.35905 -8.70783 -8.47865 -8.05457 -6.13116 -4.18476 -0.03882 1.38881 1.58002 2.40789 2.44512 2.76935 3.26289 3.30570 3.32064 3.33438 3.62077 3.63466 3.74803 4.19124 4.37254 4.44832 4.64207 4.74386 4.78947 4.83427 4.97924 5.08561 5.16542 5.20319 5.23027 5.26165 5.34633 5.37227 5.40864 5.52741 5.67516 5.71555 5.84894 5.87104 5.91605 5.94042 6.09182 6.20121 6.33478 6.35840 6.59295 6.68137 7.05941 7.28496 7.43563 7.59129 7.73087 7.79033 7.95731 8.19036 8.86689 9.45902 10.98335 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002156 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.492344 B =12986.776084 C =14370.620155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.722 5.722 5 C 0.579 3.421 6 O -0.532 6.532 7 C -0.133 4.133 8 C 0.236 3.764 9 N -0.392 5.392 10 C 0.079 3.921 11 C -0.075 4.075 12 C -0.130 4.130 13 C -0.084 4.084 14 C -0.187 4.187 15 C 0.145 3.855 16 O -0.311 6.311 17 C 0.064 3.936 18 C 0.026 3.974 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.888 5.888 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.135 4.135 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 17.717 -19.964 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 C -0.223 4.223 4 N -0.374 5.374 5 C 0.366 3.634 6 O -0.410 6.410 7 C -0.140 4.140 8 C -0.078 4.078 9 N -0.067 5.067 10 C 0.055 3.945 11 C -0.076 4.076 12 C -0.148 4.148 13 C -0.102 4.102 14 C -0.206 4.206 15 C 0.098 3.902 16 O -0.224 6.224 17 C -0.010 4.010 18 C -0.011 4.011 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.183 0.817 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.642 17.610 -19.220 26.478 hybrid contribution 0.413 -0.703 1.102 1.371 sum 5.055 16.907 -18.118 25.291 Atomic orbital electron populations 1.22102 0.93924 1.02972 1.03105 1.21004 0.94182 0.93121 0.88435 1.22201 1.02291 0.95572 1.02235 1.46033 1.17671 1.56402 1.17245 1.17557 0.81566 0.77796 0.86488 1.90823 1.56310 1.60260 1.33609 1.17988 0.95174 1.10305 0.90515 1.25478 0.94320 0.94427 0.93580 1.81431 1.08534 1.07645 1.09131 1.22959 0.92017 0.84440 0.95076 1.18674 0.93784 0.99286 0.95825 1.21144 0.93927 1.00809 0.98951 1.20890 0.99413 0.95432 0.94512 1.21684 0.92452 1.03691 1.02764 1.19029 0.88737 0.91332 0.91132 1.86230 1.34354 1.58929 1.42912 1.23401 1.00700 0.92251 0.84657 1.19122 0.92120 0.95265 0.94641 1.20909 0.93764 1.28932 1.13049 0.92393 1.25000 0.94807 0.96609 0.97789 1.69970 1.02014 1.41270 1.39373 0.86530 0.78418 0.80222 0.82094 1.20079 1.21083 1.20073 1.20891 0.99931 0.99320 0.95238 0.91961 0.90674 0.91735 0.88938 0.91819 0.91460 0.92409 0.76417 0.81707 0.85111 0.85251 0.84608 0.92914 0.92989 0.95348 0.95361 0.92594 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.38 37.15 0.35 -0.48 16 2 C 0.14 0.94 3.18 -67.93 -0.22 0.72 16 3 C -0.16 -1.03 9.48 37.16 0.35 -0.68 16 4 N -0.72 -5.95 5.03 -54.94 -0.28 -6.23 16 5 C 0.58 5.80 7.72 -12.59 -0.10 5.70 16 6 O -0.53 -6.37 15.95 5.26 0.08 -6.29 16 7 C -0.13 -1.35 5.81 -104.90 -0.61 -1.95 16 8 C 0.24 2.92 10.47 -22.47 -0.24 2.69 16 9 N -0.39 -5.90 17.90 41.84 0.75 -5.15 16 10 C 0.08 0.72 9.43 -36.75 -0.35 0.38 16 11 C -0.08 -0.87 5.57 -105.12 -0.59 -1.45 16 12 C -0.13 -1.30 9.80 -39.03 -0.38 -1.68 16 13 C -0.08 -0.94 10.02 -39.68 -0.40 -1.33 16 14 C -0.19 -2.68 9.04 -39.28 -0.36 -3.04 16 15 C 0.15 2.47 6.68 -39.29 -0.26 2.20 16 16 O -0.31 -6.44 10.13 -19.46 -0.20 -6.64 16 17 C 0.06 1.35 4.68 37.15 0.17 1.53 16 18 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 19 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C -0.13 -2.02 8.23 -38.89 -0.32 -2.34 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.40 3.06 7.48 -40.82 -0.31 2.75 16 36 H 0.17 1.11 7.59 -52.49 -0.40 0.72 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.90 6.27 -52.49 -0.33 1.57 16 40 H 0.05 1.04 7.67 -51.92 -0.40 0.64 16 41 H 0.05 1.04 7.64 -51.93 -0.40 0.65 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 45 H 0.13 2.08 5.37 -52.49 -0.28 1.79 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.91 389.45 -7.82 -40.74 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.27 Total: -0.11 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -3.49 Total: -12.60 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 1.21 Total: -37.19 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.11 Total: -12.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.91 -7.82 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.028 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds