Wall clock time and date at job start Tue Mar 31 2020 16:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 N 1.46501 * 109.47348 * 120.00096 * 2 1 3 5 5 C 1.34775 * 120.00047 * 155.00150 * 4 2 1 6 6 O 1.21622 * 120.00150 * 0.02562 * 5 4 2 7 7 C 1.47260 * 119.99977 * 179.97438 * 5 4 2 8 8 C 1.43206 * 119.99536 * 359.97438 * 7 5 4 9 9 N 5.00817 * 98.36831 * 114.82921 * 2 1 3 10 10 C 1.36587 * 120.00140 * 180.02562 * 7 5 4 11 11 C 1.46737 * 119.99991 * 186.79290 * 10 7 5 12 12 C 1.40098 * 120.16634 * 209.82981 * 11 10 7 13 13 C 1.37833 * 119.91715 * 180.02562 * 12 11 10 14 14 C 1.38382 * 120.25327 * 359.71666 * 13 12 11 15 15 C 1.38902 * 120.33328 * 0.56203 * 14 13 12 16 16 O 1.35909 * 119.95846 * 179.71661 * 15 14 13 17 17 C 1.42896 * 117.00362 * 359.72970 * 16 15 14 18 18 C 1.52992 * 109.47599 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47503 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99861 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00441 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99736 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00322 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47132 * 60.00126 * 23 21 19 25 25 H 1.48502 * 109.47307 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47321 * 299.99927 * 23 21 19 27 27 C 1.38360 * 120.07780 * 359.44092 * 15 14 13 28 28 H 1.08999 * 109.47321 * 299.99522 * 1 2 3 29 29 H 1.09002 * 109.47404 * 60.00154 * 1 2 3 30 30 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47745 * 240.00147 * 2 1 3 32 32 H 1.08995 * 109.47576 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00526 * 3 2 1 34 34 H 1.09007 * 109.46824 * 60.00029 * 3 2 1 35 35 H 0.96999 * 120.00042 * 334.99538 * 4 2 1 36 36 H 1.07996 * 119.99770 * 6.78827 * 10 7 5 37 37 H 1.08001 * 120.03906 * 359.97438 * 12 11 10 38 38 H 1.07996 * 119.87389 * 180.02562 * 13 12 11 39 39 H 1.07995 * 119.83232 * 180.27299 * 14 13 12 40 40 H 1.09009 * 109.46395 * 299.99883 * 17 16 15 41 41 H 1.09007 * 109.47433 * 59.99295 * 17 16 15 42 42 H 1.08997 * 109.46945 * 299.99860 * 18 17 16 43 43 H 1.09007 * 109.47228 * 59.99263 * 18 17 16 44 44 H 0.96998 * 119.99744 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.12288 * 180.25289 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1943 6 8 3.9378 -1.1984 0.1998 7 6 3.7314 -1.9528 2.3969 8 6 2.9108 -2.0228 3.5684 9 7 2.2588 -2.0806 4.4968 10 6 4.9700 -2.5285 2.3952 11 6 5.4008 -3.3457 3.5354 12 6 6.7580 -3.4209 3.8748 13 6 7.1569 -4.1904 4.9464 14 6 6.2212 -4.8851 5.6927 15 6 4.8736 -4.8226 5.3620 16 8 3.9618 -5.5125 6.0967 17 6 4.4605 -6.2851 7.1904 18 6 3.2958 -6.9847 7.8937 19 6 3.8219 -7.8001 9.0467 20 1 4.8811 -7.8172 9.2571 21 6 2.9510 -8.5234 9.8337 22 7 1.6611 -8.5021 9.5778 23 14 3.6030 -9.5334 11.2633 24 1 4.2975 -8.6397 12.2248 25 1 2.4725 -10.2126 11.9459 26 1 4.5575 -10.5515 10.7556 27 6 4.4578 -4.0544 4.2890 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.4623 -0.7387 1.9895 36 1 5.6323 -2.3824 1.5548 37 1 7.4907 -2.8772 3.2970 38 1 8.2032 -4.2476 5.2077 39 1 6.5409 -5.4824 6.5337 40 1 5.1618 -7.0319 6.8176 41 1 4.9697 -5.6291 7.8965 42 1 2.5950 -6.2378 8.2664 43 1 2.7863 -7.6407 7.1878 44 1 1.0484 -9.0113 10.1313 45 1 3.4097 -4.0020 4.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171148560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:59 Heat of formation + Delta-G solvation = -35.934294 kcal Electronic energy + Delta-G solvation = -26003.223436 eV Core-core repulsion = 22178.404916 eV Total energy + Delta-G solvation = -3824.818521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41990 -40.92604 -39.06097 -37.81424 -37.08205 -35.55152 -34.86113 -32.75100 -32.65837 -31.03273 -30.61001 -28.09118 -27.13670 -26.05007 -23.85024 -23.54611 -22.72222 -22.06507 -21.60448 -20.02221 -18.87677 -18.12273 -17.50181 -17.12312 -17.06594 -17.03034 -16.53728 -16.38614 -16.19517 -15.51541 -15.28273 -15.14401 -14.71864 -14.58806 -14.39425 -14.34625 -14.30103 -13.99461 -13.81148 -13.46831 -13.21521 -13.21248 -13.15479 -13.04819 -12.71154 -12.63478 -12.56018 -12.31428 -12.06536 -11.90366 -11.76121 -11.63254 -11.46275 -11.23295 -11.05695 -10.65457 -10.22654 -9.70209 -9.19295 -8.29913 -6.44647 -0.91543 0.38713 0.60660 1.38447 1.42954 1.48064 1.50996 1.52871 2.04617 2.19761 2.40523 2.45398 2.72579 2.75807 3.04260 3.35997 3.74328 3.85522 3.99590 4.05652 4.11642 4.14683 4.17869 4.20264 4.29588 4.33725 4.42374 4.59882 4.66737 4.73776 4.75232 4.83520 4.87835 4.93143 5.01694 5.23106 5.25580 5.28656 5.34411 5.35328 5.39646 5.39716 5.46946 5.62211 5.75757 6.01602 6.31489 6.34419 6.45389 6.70096 7.02896 7.25831 8.83185 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002156 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.492344 B =12986.776084 C =14370.620155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.160 4.160 4 N -0.719 5.719 5 C 0.583 3.417 6 O -0.551 6.551 7 C -0.141 4.141 8 C 0.261 3.739 9 N -0.448 5.448 10 C 0.102 3.898 11 C -0.076 4.076 12 C -0.105 4.105 13 C -0.078 4.078 14 C -0.195 4.195 15 C 0.100 3.900 16 O -0.346 6.346 17 C 0.085 3.915 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.153 4.153 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.403 0.597 36 H 0.202 0.798 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.061 0.939 42 H -0.008 1.008 43 H -0.004 1.004 44 H 0.267 0.733 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 18.748 -21.124 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.369 5.369 5 C 0.370 3.630 6 O -0.431 6.431 7 C -0.148 4.148 8 C -0.053 4.053 9 N -0.125 5.125 10 C 0.079 3.921 11 C -0.076 4.076 12 C -0.122 4.122 13 C -0.096 4.096 14 C -0.214 4.214 15 C 0.055 3.945 16 O -0.261 6.261 17 C 0.010 3.990 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.186 1.186 27 C -0.172 4.172 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.238 0.762 36 H 0.219 0.781 37 H 0.199 0.801 38 H 0.186 0.814 39 H 0.152 0.848 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.076 0.924 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.977 18.668 -20.399 28.779 hybrid contribution -0.583 -0.915 1.305 1.697 sum 7.394 17.754 -19.094 27.100 Atomic orbital electron populations 1.22080 0.92496 1.02957 1.04092 1.21153 0.95313 0.93243 0.87396 1.22160 1.01227 0.95199 1.03233 1.46132 1.17182 1.55800 1.17822 1.17458 0.81863 0.77692 0.85986 1.90814 1.56925 1.61275 1.34044 1.18080 0.95416 1.11518 0.89796 1.25820 0.93379 0.92791 0.93302 1.81448 1.10339 1.09743 1.10973 1.23225 0.91741 0.82372 0.94776 1.18926 0.94156 0.98742 0.95803 1.21744 0.93761 0.98854 0.97877 1.21360 1.00537 0.93946 0.93747 1.21835 0.91763 1.04399 1.03414 1.19369 0.89574 0.93239 0.92359 1.86123 1.36322 1.60224 1.43411 1.22899 0.98143 0.92660 0.85258 1.18961 0.93283 0.94221 0.94479 1.21360 0.94680 1.28988 1.13368 0.90767 1.26114 0.94924 0.97892 1.01050 1.70133 1.03688 1.42422 1.40917 0.85289 0.77920 0.78544 0.78026 1.18747 1.20862 1.18571 1.20941 1.00002 1.00445 0.95796 0.91629 0.89020 0.92262 0.89782 0.93345 0.89769 0.92130 0.76186 0.78090 0.80135 0.81421 0.84770 0.91540 0.92057 0.98925 0.98532 0.92433 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.38 71.98 0.68 -0.76 16 2 C 0.13 1.70 3.18 44.99 0.14 1.84 16 3 C -0.16 -1.80 9.48 71.98 0.68 -1.12 16 4 N -0.72 -11.50 5.03 -445.97 -2.24 -13.75 16 5 C 0.58 11.05 7.72 86.62 0.67 11.72 16 6 O -0.55 -12.27 15.95 -4.10 -0.07 -12.33 16 7 C -0.14 -2.70 5.81 -20.04 -0.12 -2.82 16 8 C 0.26 6.63 10.47 88.33 0.92 7.55 16 9 N -0.45 -14.38 17.90 19.01 0.34 -14.04 16 10 C 0.10 1.58 9.43 24.11 0.23 1.80 16 11 C -0.08 -1.56 5.57 -20.18 -0.11 -1.67 16 12 C -0.10 -1.59 9.80 22.63 0.22 -1.37 16 13 C -0.08 -1.43 10.02 22.21 0.22 -1.21 16 14 C -0.20 -5.39 9.04 22.46 0.20 -5.18 16 15 C 0.10 3.50 6.68 22.46 0.15 3.65 16 16 O -0.35 -15.34 10.13 -92.53 -0.94 -16.28 16 17 C 0.08 3.76 4.68 71.98 0.34 4.10 16 18 C 0.03 1.56 5.34 29.84 0.16 1.72 16 19 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 20 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 22 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 23 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 C -0.15 -4.64 8.23 22.72 0.19 -4.46 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.25 7.58 -2.39 -0.02 1.23 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.40 6.17 7.48 -92.71 -0.69 5.48 16 36 H 0.20 1.73 7.59 -2.91 -0.02 1.71 16 37 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.13 3.64 6.27 -2.91 -0.02 3.63 16 40 H 0.07 2.70 7.67 -2.38 -0.02 2.69 16 41 H 0.06 2.55 7.64 -2.38 -0.02 2.53 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.11 3.80 5.37 -2.91 -0.02 3.78 16 Total: -1.00 -77.13 389.45 4.99 -72.14 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.32 Total: 12.81 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 5.27 Total: -16.76 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.62 Total: -85.37 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.00 Total: -28.61 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.13 4.99 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.206 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds