Wall clock time and date at job start Tue Mar 31 2020 16:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46612 * 2 1 4 4 N 1.46508 * 109.46483 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99388 * 179.97438 * 4 3 2 6 6 O 1.21627 * 120.00581 * 0.27579 * 5 4 3 7 7 C 1.47258 * 119.99770 * 179.97438 * 5 4 3 8 8 C 1.43199 * 119.99965 * 0.02562 * 7 5 4 9 9 N 5.00819 * 132.55283 * 359.97438 * 3 1 2 10 10 C 1.36584 * 119.99929 * 179.97438 * 7 5 4 11 11 C 1.46739 * 119.99845 * 173.19631 * 10 7 5 12 12 C 1.40101 * 120.16657 * 330.10836 * 11 10 7 13 13 C 1.37836 * 119.91403 * 179.71758 * 12 11 10 14 14 C 1.38373 * 120.25363 * 0.55980 * 13 12 11 15 15 C 1.38904 * 120.33850 * 359.71721 * 14 13 12 16 16 O 1.35907 * 119.96069 * 179.97438 * 15 14 13 17 17 C 1.42906 * 117.00062 * 0.02562 * 16 15 14 18 18 C 1.52994 * 109.46979 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47035 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00192 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00143 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99959 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47016 * 90.00166 * 23 21 19 25 25 H 1.48500 * 109.47068 * 209.99777 * 23 21 19 26 26 H 1.48492 * 109.47238 * 330.00030 * 23 21 19 27 27 C 1.38358 * 120.07451 * 359.97438 * 15 14 13 28 28 H 1.08998 * 109.47708 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47309 * 60.00668 * 1 2 3 30 30 H 1.09005 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47221 * 239.99471 * 2 1 3 32 32 H 1.09002 * 109.46654 * 119.99573 * 2 1 3 33 33 H 1.08994 * 109.47312 * 60.00089 * 3 2 1 34 34 H 1.09002 * 109.47263 * 299.99200 * 3 2 1 35 35 H 0.96991 * 120.00158 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00559 * 353.19992 * 10 7 5 37 37 H 1.07994 * 120.03903 * 0.02562 * 12 11 10 38 38 H 1.07996 * 119.86811 * 180.27733 * 13 12 11 39 39 H 1.07999 * 119.82993 * 179.70162 * 14 13 12 40 40 H 1.09002 * 109.46901 * 300.00635 * 17 16 15 41 41 H 1.08998 * 109.47059 * 60.00507 * 17 16 15 42 42 H 1.09002 * 109.47414 * 299.99820 * 18 17 16 43 43 H 1.08998 * 109.47220 * 60.00104 * 18 17 16 44 44 H 0.96998 * 119.99922 * 180.02562 * 22 21 19 45 45 H 1.08006 * 120.12426 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1787 2.6098 0.0002 6 8 3.5706 3.6631 0.0044 7 6 5.6513 2.6098 0.0014 8 6 6.3673 1.3697 0.0024 9 7 6.9353 0.3859 0.0016 10 6 6.3342 3.7927 0.0005 11 6 7.7937 3.7974 0.1522 12 6 8.4283 2.7880 0.8878 13 6 9.8001 2.7943 1.0221 14 6 10.5527 3.8005 0.4427 15 6 9.9340 4.8097 -0.2840 16 8 10.6806 5.7945 -0.8494 17 6 12.0950 5.7285 -0.6562 18 6 12.7616 6.9124 -1.3596 19 6 14.2532 6.8424 -1.1564 20 1 14.6828 6.0341 -0.5833 21 6 15.0695 7.8103 -1.7021 22 7 14.5465 8.7943 -2.4005 23 14 16.9184 7.7239 -1.4496 24 1 17.5321 6.9382 -2.5503 25 1 17.4824 9.0976 -1.4478 26 1 17.2103 7.0672 -0.1502 27 6 8.5584 4.8134 -0.4329 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9899 0.6026 0.0013 36 1 5.8000 4.7246 -0.1119 37 1 7.8438 2.0033 1.3448 38 1 10.2889 2.0133 1.5856 39 1 11.6267 3.8014 0.5563 40 1 12.3182 5.7670 0.4100 41 1 12.4756 4.7963 -1.0736 42 1 12.5384 6.8742 -2.4258 43 1 12.3810 7.8444 -0.9418 44 1 15.1208 9.4750 -2.7847 45 1 8.0764 5.5979 -0.9975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171148834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:06 Heat of formation + Delta-G solvation = -19.372639 kcal Electronic energy + Delta-G solvation = -25360.530346 eV Core-core repulsion = 21536.429993 eV Total energy + Delta-G solvation = -3824.100354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47545 -39.87671 -38.01258 -36.71222 -36.31068 -34.05416 -33.42212 -33.09497 -31.17992 -30.28203 -29.23948 -27.03686 -25.39242 -24.39011 -22.80143 -22.23620 -21.77069 -21.54523 -20.51452 -18.93854 -17.68846 -16.66776 -16.47106 -16.28026 -16.03567 -15.91172 -15.48720 -15.28152 -15.00462 -14.86965 -14.53352 -14.26626 -13.71311 -13.65141 -13.46990 -13.26268 -13.16305 -12.93387 -12.90929 -12.62093 -12.58075 -12.36010 -11.72116 -11.70273 -11.64603 -11.44386 -11.43061 -10.97525 -10.84794 -10.60816 -10.49701 -10.28288 -9.95789 -9.73360 -9.57353 -9.36453 -8.72816 -8.49749 -8.09010 -6.15126 -4.20279 -0.09586 1.38408 1.52918 2.27415 2.29769 2.67756 3.21050 3.24323 3.30406 3.32787 3.50433 3.61241 3.71386 4.17373 4.29912 4.37433 4.43558 4.60351 4.69805 4.80276 4.93029 5.06520 5.08228 5.10130 5.16568 5.21531 5.23840 5.34426 5.43848 5.49206 5.57778 5.59489 5.67141 5.88600 5.89993 5.92186 5.92849 6.16418 6.32841 6.34150 6.56842 6.64842 6.96003 7.10524 7.41081 7.56707 7.70980 7.71425 7.92720 8.17247 8.85115 9.44535 10.96307 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.001669 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.395350 B =16773.912825 C =17310.284513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.728 5.728 5 C 0.577 3.423 6 O -0.529 6.529 7 C -0.143 4.143 8 C 0.251 3.749 9 N -0.410 5.410 10 C 0.089 3.911 11 C -0.078 4.078 12 C -0.140 4.140 13 C -0.081 4.081 14 C -0.183 4.183 15 C 0.141 3.859 16 O -0.312 6.312 17 C 0.063 3.937 18 C 0.025 3.975 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.119 4.119 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.264 0.736 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.784 -16.389 6.590 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.380 5.380 5 C 0.364 3.636 6 O -0.406 6.406 7 C -0.150 4.150 8 C -0.063 4.063 9 N -0.086 5.086 10 C 0.065 3.935 11 C -0.078 4.078 12 C -0.159 4.159 13 C -0.099 4.099 14 C -0.202 4.202 15 C 0.094 3.906 16 O -0.225 6.225 17 C -0.011 4.011 18 C -0.012 4.012 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.526 5.526 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.184 0.816 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.407 -16.829 6.366 30.322 hybrid contribution 1.353 -0.225 0.203 1.387 sum -23.054 -17.055 6.569 29.419 Atomic orbital electron populations 1.21673 0.94288 1.02292 1.02462 1.21760 0.97208 0.95747 1.02920 1.21479 0.78646 0.97418 1.02965 1.45896 1.07852 1.08463 1.75743 1.17541 0.85708 0.84001 0.76358 1.90854 1.68950 1.30746 1.50077 1.17919 0.92023 0.87747 1.17295 1.25442 0.93761 0.92960 0.94099 1.81322 1.07242 1.11220 1.08860 1.23018 0.92185 0.97602 0.80658 1.18659 0.91601 0.96428 1.01133 1.21387 0.95106 0.97978 1.01428 1.20842 0.93318 0.97630 0.98151 1.21686 1.01432 0.95975 1.01142 1.19049 0.91347 0.88381 0.91825 1.86210 1.21992 1.44407 1.69851 1.23407 0.74562 1.02489 1.00595 1.19129 0.94253 0.91375 0.96406 1.20955 0.90732 1.10569 1.34474 0.92359 1.24980 0.99162 0.95095 0.94838 1.69970 1.35589 1.12884 1.34169 0.86486 0.84780 0.77454 0.78664 1.20477 1.20997 1.19761 1.20623 0.91133 0.99359 1.02696 0.92233 0.92208 0.92119 0.91205 0.91237 0.90965 0.90934 0.76511 0.81618 0.85914 0.85498 0.84567 0.92912 0.92968 0.95326 0.95277 0.92646 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.14 -0.56 6.05 -26.73 -0.16 -0.72 16 3 C 0.12 0.70 5.67 -4.04 -0.02 0.68 16 4 N -0.73 -5.21 5.51 -61.43 -0.34 -5.55 16 5 C 0.58 5.41 7.75 -12.59 -0.10 5.31 16 6 O -0.53 -6.36 16.29 5.25 0.09 -6.28 16 7 C -0.14 -1.29 5.81 -104.90 -0.61 -1.90 16 8 C 0.25 2.53 10.46 -22.47 -0.24 2.29 16 9 N -0.41 -4.79 17.91 41.84 0.75 -4.04 16 10 C 0.09 0.80 9.42 -36.75 -0.35 0.46 16 11 C -0.08 -0.88 5.57 -105.11 -0.59 -1.47 16 12 C -0.14 -1.65 8.29 -39.03 -0.32 -1.97 16 13 C -0.08 -1.00 10.02 -39.68 -0.40 -1.40 16 14 C -0.18 -2.61 9.04 -39.29 -0.36 -2.96 16 15 C 0.14 2.22 6.68 -39.29 -0.26 1.96 16 16 O -0.31 -5.93 10.13 -19.45 -0.20 -6.13 16 17 C 0.06 1.28 4.68 37.15 0.17 1.46 16 18 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 19 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 23 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.12 -1.56 9.74 -38.89 -0.38 -1.94 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.40 2.40 7.35 -40.82 -0.30 2.10 16 36 H 0.17 1.23 7.59 -52.49 -0.40 0.83 16 37 H 0.12 1.34 5.37 -52.49 -0.28 1.06 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 1.89 6.27 -52.49 -0.33 1.56 16 40 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 41 H 0.05 1.00 7.66 -51.93 -0.40 0.61 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -31.51 390.33 -8.19 -39.70 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.30 Total: -1.31 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.79 Total: -12.95 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 1.15 Total: -34.80 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.11 Total: -12.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.51 -8.19 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds