Wall clock time and date at job start Tue Mar 31 2020 16:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46612 * 2 1 4 4 N 1.46508 * 109.46483 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99388 * 179.97438 * 4 3 2 6 6 O 1.21627 * 120.00581 * 0.27579 * 5 4 3 7 7 C 1.47258 * 119.99770 * 179.97438 * 5 4 3 8 8 C 1.43199 * 119.99965 * 0.02562 * 7 5 4 9 9 N 5.00819 * 132.55283 * 359.97438 * 3 1 2 10 10 C 1.36584 * 119.99929 * 179.97438 * 7 5 4 11 11 C 1.46739 * 119.99845 * 173.19631 * 10 7 5 12 12 C 1.40101 * 120.16657 * 330.10836 * 11 10 7 13 13 C 1.37836 * 119.91403 * 179.71758 * 12 11 10 14 14 C 1.38373 * 120.25363 * 0.55980 * 13 12 11 15 15 C 1.38904 * 120.33850 * 359.71721 * 14 13 12 16 16 O 1.35907 * 119.96069 * 179.97438 * 15 14 13 17 17 C 1.42906 * 117.00062 * 0.02562 * 16 15 14 18 18 C 1.52994 * 109.46979 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47035 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00192 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00143 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99959 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47016 * 90.00166 * 23 21 19 25 25 H 1.48500 * 109.47068 * 209.99777 * 23 21 19 26 26 H 1.48492 * 109.47238 * 330.00030 * 23 21 19 27 27 C 1.38358 * 120.07451 * 359.97438 * 15 14 13 28 28 H 1.08998 * 109.47708 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47309 * 60.00668 * 1 2 3 30 30 H 1.09005 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47221 * 239.99471 * 2 1 3 32 32 H 1.09002 * 109.46654 * 119.99573 * 2 1 3 33 33 H 1.08994 * 109.47312 * 60.00089 * 3 2 1 34 34 H 1.09002 * 109.47263 * 299.99200 * 3 2 1 35 35 H 0.96991 * 120.00158 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00559 * 353.19992 * 10 7 5 37 37 H 1.07994 * 120.03903 * 0.02562 * 12 11 10 38 38 H 1.07996 * 119.86811 * 180.27733 * 13 12 11 39 39 H 1.07999 * 119.82993 * 179.70162 * 14 13 12 40 40 H 1.09002 * 109.46901 * 300.00635 * 17 16 15 41 41 H 1.08998 * 109.47059 * 60.00507 * 17 16 15 42 42 H 1.09002 * 109.47414 * 299.99820 * 18 17 16 43 43 H 1.08998 * 109.47220 * 60.00104 * 18 17 16 44 44 H 0.96998 * 119.99922 * 180.02562 * 22 21 19 45 45 H 1.08006 * 120.12426 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1787 2.6098 0.0002 6 8 3.5706 3.6631 0.0044 7 6 5.6513 2.6098 0.0014 8 6 6.3673 1.3697 0.0024 9 7 6.9353 0.3859 0.0016 10 6 6.3342 3.7927 0.0005 11 6 7.7937 3.7974 0.1522 12 6 8.4283 2.7880 0.8878 13 6 9.8001 2.7943 1.0221 14 6 10.5527 3.8005 0.4427 15 6 9.9340 4.8097 -0.2840 16 8 10.6806 5.7945 -0.8494 17 6 12.0950 5.7285 -0.6562 18 6 12.7616 6.9124 -1.3596 19 6 14.2532 6.8424 -1.1564 20 1 14.6828 6.0341 -0.5833 21 6 15.0695 7.8103 -1.7021 22 7 14.5465 8.7943 -2.4005 23 14 16.9184 7.7239 -1.4496 24 1 17.5321 6.9382 -2.5503 25 1 17.4824 9.0976 -1.4478 26 1 17.2103 7.0672 -0.1502 27 6 8.5584 4.8134 -0.4329 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9899 0.6026 0.0013 36 1 5.8000 4.7246 -0.1119 37 1 7.8438 2.0033 1.3448 38 1 10.2889 2.0133 1.5856 39 1 11.6267 3.8014 0.5563 40 1 12.3182 5.7670 0.4100 41 1 12.4756 4.7963 -1.0736 42 1 12.5384 6.8742 -2.4258 43 1 12.3810 7.8444 -0.9418 44 1 15.1208 9.4750 -2.7847 45 1 8.0764 5.5979 -0.9975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171148834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:05 Heat of formation + Delta-G solvation = -37.291419 kcal Electronic energy + Delta-G solvation = -25361.307363 eV Core-core repulsion = 21536.429993 eV Total energy + Delta-G solvation = -3824.877370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38362 -40.88188 -39.11542 -37.69825 -36.88367 -35.50362 -34.87774 -33.61306 -32.66601 -31.52160 -30.46040 -27.65218 -27.03833 -25.43231 -23.83906 -23.30622 -22.57554 -22.36970 -21.80900 -19.84709 -18.91163 -18.14328 -17.46620 -17.22153 -16.98022 -16.94967 -16.79426 -16.55323 -16.07685 -15.71377 -15.62156 -15.11364 -14.57666 -14.56210 -14.51747 -14.36352 -14.28897 -14.08187 -13.85884 -13.59619 -13.41385 -13.24979 -13.08038 -12.93522 -12.70974 -12.58291 -12.52432 -12.06527 -12.03034 -11.76399 -11.71577 -11.59332 -11.39726 -11.29158 -11.10129 -10.61535 -10.22622 -9.66811 -9.23987 -8.26356 -6.39752 -0.94169 0.34969 0.56903 1.41676 1.43196 1.45204 1.51279 1.54266 1.99761 2.23350 2.38245 2.47141 2.70961 2.72838 3.08565 3.35922 3.73954 3.84706 3.93940 3.98708 4.03038 4.08549 4.21950 4.27090 4.27742 4.35435 4.41333 4.64071 4.69293 4.69930 4.73845 4.75859 4.88136 4.92922 5.15592 5.16776 5.24844 5.26673 5.31631 5.33695 5.34493 5.44652 5.48293 5.58765 5.73744 6.07123 6.27886 6.32934 6.46514 6.75211 7.01820 7.30562 8.86489 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.001669 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.395350 B =16773.912825 C =17310.284513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.116 3.884 4 N -0.719 5.719 5 C 0.579 3.421 6 O -0.556 6.556 7 C -0.131 4.131 8 C 0.265 3.735 9 N -0.433 5.433 10 C 0.095 3.905 11 C -0.070 4.070 12 C -0.138 4.138 13 C -0.081 4.081 14 C -0.192 4.192 15 C 0.108 3.892 16 O -0.334 6.334 17 C 0.082 3.918 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.973 3.027 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.185 0.815 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.061 0.939 42 H -0.001 1.001 43 H 0.001 0.999 44 H 0.266 0.734 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.329 -18.331 7.643 32.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.007 4.007 4 N -0.369 5.369 5 C 0.365 3.635 6 O -0.436 6.436 7 C -0.138 4.138 8 C -0.049 4.049 9 N -0.110 5.110 10 C 0.072 3.928 11 C -0.070 4.070 12 C -0.156 4.156 13 C -0.099 4.099 14 C -0.211 4.211 15 C 0.062 3.938 16 O -0.248 6.248 17 C 0.008 3.992 18 C -0.010 4.010 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.797 3.203 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.140 4.140 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.202 0.798 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.075 0.925 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.976 -18.825 7.433 32.147 hybrid contribution 1.326 0.289 -0.112 1.362 sum -23.650 -18.536 7.321 30.928 Atomic orbital electron populations 1.21681 0.93810 1.02738 1.02506 1.21720 0.97528 0.94355 1.03360 1.21585 0.77783 0.98734 1.02596 1.45915 1.08486 1.08165 1.74379 1.17527 0.85625 0.84137 0.76166 1.90850 1.69360 1.31763 1.51657 1.17857 0.91924 0.87253 1.16770 1.25494 0.93224 0.92760 0.93393 1.81352 1.08026 1.11893 1.09685 1.23065 0.90887 0.98466 0.80431 1.18782 0.92594 0.95477 1.00141 1.21631 0.95157 0.98045 1.00807 1.21096 0.93567 0.97485 0.97724 1.21754 1.01672 0.96252 1.01427 1.19343 0.92074 0.88721 0.93635 1.86117 1.21119 1.46333 1.71273 1.22913 0.75646 1.00247 1.00371 1.18963 0.94547 0.92478 0.94980 1.21409 0.91748 1.10929 1.34428 0.91125 1.25991 1.04567 0.94576 0.94342 1.70111 1.37602 1.13825 1.35318 0.85328 0.78211 0.77602 0.79191 1.19684 1.20722 1.18349 1.20812 0.90287 1.00157 1.02707 0.92172 0.92249 0.91462 0.90826 0.90703 0.91277 0.91391 0.75699 0.79758 0.84733 0.83225 0.84627 0.91840 0.92060 0.98234 0.98080 0.92477 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 71.98 0.71 -0.10 16 2 C -0.13 -0.83 6.05 30.59 0.19 -0.65 16 3 C 0.12 1.22 5.67 86.38 0.49 1.71 16 4 N -0.72 -9.04 5.51 -466.51 -2.57 -11.61 16 5 C 0.58 9.84 7.75 86.61 0.67 10.51 16 6 O -0.56 -12.62 16.29 -4.12 -0.07 -12.69 16 7 C -0.13 -2.10 5.81 -20.05 -0.12 -2.21 16 8 C 0.26 4.76 10.46 88.33 0.92 5.69 16 9 N -0.43 -9.24 17.91 19.00 0.34 -8.90 16 10 C 0.09 1.51 9.42 24.11 0.23 1.74 16 11 C -0.07 -1.45 5.57 -20.18 -0.11 -1.57 16 12 C -0.14 -2.94 8.29 22.63 0.19 -2.75 16 13 C -0.08 -1.84 10.02 22.21 0.22 -1.61 16 14 C -0.19 -5.32 9.04 22.46 0.20 -5.11 16 15 C 0.11 3.38 6.68 22.46 0.15 3.53 16 16 O -0.33 -13.06 10.13 -92.50 -0.94 -14.00 16 17 C 0.08 3.41 4.68 71.98 0.34 3.74 16 18 C 0.03 1.46 5.34 29.85 0.16 1.62 16 19 C -0.55 -30.19 9.11 25.60 0.23 -29.96 16 20 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 23 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 C -0.12 -3.06 9.74 22.72 0.22 -2.84 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.41 4.07 7.35 -92.72 -0.68 3.39 16 36 H 0.19 2.32 7.59 -2.91 -0.02 2.30 16 37 H 0.14 2.58 5.37 -2.91 -0.02 2.56 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.14 3.68 6.27 -2.91 -0.02 3.66 16 40 H 0.06 2.44 7.65 -2.39 -0.02 2.43 16 41 H 0.06 2.38 7.66 -2.39 -0.02 2.36 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -68.60 390.33 4.57 -64.03 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.33 Total: 11.29 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.16 Total: -17.58 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.94 Total: -75.90 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.00 Total: -26.68 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.60 4.57 -64.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171148834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.740 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds