Wall clock time and date at job start Tue Mar 31 2020 16:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47510 * 2 1 4 4 N 1.46495 * 109.47105 * 120.00246 * 2 1 3 5 5 C 1.35538 * 125.67959 * 294.96421 * 4 2 1 6 6 C 1.35451 * 108.87170 * 179.97438 * 5 4 2 7 7 C 1.39829 * 107.86653 * 0.24799 * 6 5 4 8 8 C 1.37654 * 125.67941 * 114.94753 * 4 2 1 9 9 C 1.46675 * 126.23499 * 0.02562 * 8 4 2 10 10 O 1.21696 * 119.99644 * 4.85931 * 9 8 4 11 11 N 1.34777 * 120.00194 * 184.85836 * 9 8 4 12 12 C 1.46504 * 119.99850 * 185.04820 * 11 9 8 13 13 C 1.50694 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.38313 * 119.92722 * 269.72552 * 13 12 11 15 15 C 1.38098 * 120.06762 * 179.72238 * 14 13 12 16 16 C 1.38881 * 119.92989 * 0.57482 * 15 14 13 17 17 O 1.35749 * 120.07045 * 179.68152 * 16 15 14 18 18 C 1.34832 * 117.00422 * 174.47156 * 17 16 15 19 19 H 1.07999 * 119.99618 * 5.05245 * 18 17 16 20 20 C 1.38656 * 120.00189 * 185.05872 * 18 17 16 21 21 N 1.31551 * 119.99620 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47026 * 59.99559 * 22 20 18 24 24 H 1.48492 * 109.46822 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47014 * 299.99968 * 22 20 18 26 26 C 1.38883 * 119.86242 * 359.69779 * 16 15 14 27 27 C 1.38100 * 119.92853 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46699 * 300.00143 * 1 2 3 29 29 H 1.09006 * 109.47048 * 59.99515 * 1 2 3 30 30 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47157 * 240.00125 * 2 1 3 32 32 H 1.08998 * 109.47188 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47070 * 299.99860 * 3 2 1 34 34 H 1.09000 * 109.47256 * 60.00198 * 3 2 1 35 35 H 1.07994 * 125.56109 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.06201 * 179.97438 * 6 5 4 37 37 H 1.08009 * 126.45698 * 179.76163 * 7 6 5 38 38 H 0.96992 * 119.99808 * 5.05638 * 11 9 8 39 39 H 1.09001 * 109.47059 * 300.00150 * 12 11 9 40 40 H 1.09000 * 109.47284 * 59.99969 * 12 11 9 41 41 H 1.07997 * 119.96344 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.03572 * 180.26875 * 15 14 13 43 43 H 0.97008 * 119.99555 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03456 * 179.97438 * 26 16 15 45 45 H 1.08003 * 119.95903 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.8437 -0.2764 2.4748 6 6 2.4313 -1.1679 3.3082 7 6 3.0008 -2.1766 2.5249 8 6 2.7306 -1.8685 1.2085 9 6 3.1337 -2.6503 0.0348 10 8 2.9151 -2.2247 -1.0841 11 7 3.7462 -3.8401 0.1955 12 6 4.2478 -4.5693 -0.9719 13 6 4.8840 -5.8595 -0.5230 14 6 6.2325 -5.8942 -0.2173 15 6 6.8173 -7.0737 0.1999 16 6 6.0524 -8.2285 0.3009 17 8 6.6257 -9.3909 0.7045 18 6 5.8062 -10.4452 0.8912 19 1 4.7584 -10.3653 0.6422 20 6 6.3087 -11.6318 1.4030 21 7 7.5852 -11.7291 1.7060 22 14 5.1732 -13.0922 1.6624 23 1 4.5712 -13.4879 0.3638 24 1 5.9497 -14.2309 2.2150 25 1 4.0960 -12.7187 2.6139 26 6 4.6998 -8.1916 -0.0122 27 6 4.1197 -7.0077 -0.4233 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.3207 0.6180 2.7794 36 1 2.4591 -1.1078 4.3862 37 1 3.5472 -3.0364 2.8837 38 1 3.8548 -4.2135 1.0841 39 1 3.4203 -4.7882 -1.6467 40 1 4.9880 -3.9600 -1.4905 41 1 6.8278 -4.9970 -0.3011 42 1 7.8693 -7.0991 0.4426 43 1 7.9368 -12.5594 2.0637 44 1 4.1025 -9.0881 0.0650 45 1 3.0680 -6.9787 -0.6673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179169213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:03 Heat of formation + Delta-G solvation = 3.031198 kcal Electronic energy + Delta-G solvation = -26460.219089 eV Core-core repulsion = 22637.090238 eV Total energy + Delta-G solvation = -3823.128850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62030 -39.41034 -38.80432 -36.84782 -35.73829 -34.36947 -32.38400 -30.57302 -30.25663 -30.02257 -28.88315 -27.68228 -25.92324 -24.82594 -22.96156 -22.14969 -22.05477 -20.73568 -20.35963 -19.41565 -18.08575 -17.86355 -17.02747 -16.02687 -15.69900 -15.58880 -14.98585 -14.88590 -14.63125 -14.39698 -14.23334 -14.16488 -13.82381 -13.71042 -13.39087 -13.05778 -12.86488 -12.78364 -12.72742 -12.56325 -12.46644 -12.31278 -12.09870 -11.69676 -11.64923 -11.44728 -11.33167 -10.95046 -10.80922 -10.70980 -10.50504 -9.90235 -9.43551 -9.05951 -8.91042 -8.89049 -8.31569 -8.28501 -7.33701 -6.53106 -4.12018 1.39364 2.02801 2.12895 2.55333 2.62822 3.09086 3.09609 3.13057 3.36849 3.47217 3.90464 4.32926 4.48182 4.59447 4.72988 4.80517 4.86723 5.01494 5.10054 5.12839 5.15815 5.22442 5.24875 5.29649 5.37488 5.40765 5.53497 5.65429 5.68704 5.75159 5.79556 5.87645 5.94605 6.10216 6.12032 6.34265 6.46475 6.59347 6.65948 6.79965 6.89140 6.95230 7.09673 7.13544 7.26612 7.34752 7.58561 7.71269 7.91442 8.20449 8.92075 9.60047 10.64236 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.556730 B =13378.900322 C =13673.028738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 C -0.159 4.159 4 N -0.401 5.401 5 C 0.013 3.987 6 C -0.209 4.209 7 C -0.140 4.140 8 C -0.051 4.051 9 C 0.586 3.414 10 O -0.559 6.559 11 N -0.708 5.708 12 C 0.182 3.818 13 C -0.216 4.216 14 C -0.053 4.053 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.049 4.049 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.405 0.595 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 21.784 0.005 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 C -0.216 4.216 4 N -0.075 5.075 5 C -0.122 4.122 6 C -0.233 4.233 7 C -0.167 4.167 8 C -0.164 4.164 9 C 0.374 3.626 10 O -0.440 6.440 11 N -0.358 5.358 12 C 0.060 3.940 13 C -0.218 4.218 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.678 21.974 -1.016 24.905 hybrid contribution -0.556 -0.937 0.712 1.302 sum -12.234 21.037 -0.303 24.338 Atomic orbital electron populations 1.22144 0.93631 1.03082 1.02806 1.21977 0.95257 0.94224 0.88339 1.22134 1.02221 0.94376 1.02896 1.44172 1.39556 1.17324 1.06409 1.21871 1.05829 1.01752 0.82753 1.20806 1.06071 0.97113 0.99278 1.21407 1.03555 1.00888 0.90812 1.20117 1.08777 0.92648 0.94881 1.17056 0.77529 0.81052 0.86996 1.90690 1.56950 1.70624 1.25762 1.46028 1.58544 1.19577 1.11691 1.20004 0.97607 0.89840 0.86533 1.19179 0.94524 0.94217 1.13862 1.20535 0.93733 0.96488 0.96444 1.20215 1.00086 0.91077 1.10071 1.19445 0.91277 0.87236 0.91432 1.83977 1.35671 1.15252 1.72593 1.21309 0.92423 0.88937 1.44316 0.88960 1.25320 0.96775 0.98391 0.95972 1.70028 1.12375 1.27346 1.39560 0.85762 0.79081 0.79393 0.79121 1.19432 1.20212 1.19407 1.21156 0.95608 0.98980 1.09888 1.20641 0.98166 0.91917 0.96094 0.92123 0.90615 0.91818 0.85000 0.91751 0.90552 0.92072 0.81970 0.84163 0.83816 0.75970 0.91373 0.91420 0.86924 0.86348 0.91817 0.85407 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.30 37.16 0.35 -0.85 16 2 C 0.10 0.97 3.48 -67.94 -0.24 0.73 16 3 C -0.16 -1.13 9.16 37.16 0.34 -0.79 16 4 N -0.40 -4.36 2.64 -105.82 -0.28 -4.64 16 5 C 0.01 0.12 10.33 -16.91 -0.17 -0.05 16 6 C -0.21 -2.06 10.81 -39.98 -0.43 -2.49 16 7 C -0.14 -1.57 10.35 -39.12 -0.40 -1.97 16 8 C -0.05 -0.64 6.89 -81.98 -0.56 -1.20 16 9 C 0.59 8.25 7.77 -12.85 -0.10 8.15 16 10 O -0.56 -9.09 14.37 5.19 0.07 -9.01 16 11 N -0.71 -9.26 5.52 -62.80 -0.35 -9.61 16 12 C 0.18 2.54 5.80 -5.19 -0.03 2.51 16 13 C -0.22 -3.44 5.25 -104.58 -0.55 -3.99 16 14 C -0.05 -0.89 9.69 -39.60 -0.38 -1.27 16 15 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 16 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 17 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 18 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 C -0.24 -4.88 9.17 -39.39 -0.36 -5.24 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 28 H 0.06 0.39 8.01 -51.93 -0.42 -0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.13 1.57 5.33 -51.93 -0.28 1.29 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 35 H 0.16 1.02 7.91 -52.49 -0.42 0.60 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.40 7.49 -52.48 -0.39 1.01 16 38 H 0.40 4.84 7.41 -40.82 -0.30 4.54 16 39 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 45 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -31.28 380.13 -8.61 -39.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.13 Total: 9.22 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.39 Total: -17.94 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.13 Total: -38.08 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.28 -8.61 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179169213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.919 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds