Wall clock time and date at job start Tue Mar 31 2020 16:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47510 * 2 1 4 4 N 1.46495 * 109.47105 * 120.00246 * 2 1 3 5 5 C 1.35538 * 125.67959 * 294.96421 * 4 2 1 6 6 C 1.35451 * 108.87170 * 179.97438 * 5 4 2 7 7 C 1.39829 * 107.86653 * 0.24799 * 6 5 4 8 8 C 1.37654 * 125.67941 * 114.94753 * 4 2 1 9 9 C 1.46675 * 126.23499 * 0.02562 * 8 4 2 10 10 O 1.21696 * 119.99644 * 4.85931 * 9 8 4 11 11 N 1.34777 * 120.00194 * 184.85836 * 9 8 4 12 12 C 1.46504 * 119.99850 * 185.04820 * 11 9 8 13 13 C 1.50694 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.38313 * 119.92722 * 269.72552 * 13 12 11 15 15 C 1.38098 * 120.06762 * 179.72238 * 14 13 12 16 16 C 1.38881 * 119.92989 * 0.57482 * 15 14 13 17 17 O 1.35749 * 120.07045 * 179.68152 * 16 15 14 18 18 C 1.34832 * 117.00422 * 174.47156 * 17 16 15 19 19 H 1.07999 * 119.99618 * 5.05245 * 18 17 16 20 20 C 1.38656 * 120.00189 * 185.05872 * 18 17 16 21 21 N 1.31551 * 119.99620 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47026 * 59.99559 * 22 20 18 24 24 H 1.48492 * 109.46822 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47014 * 299.99968 * 22 20 18 26 26 C 1.38883 * 119.86242 * 359.69779 * 16 15 14 27 27 C 1.38100 * 119.92853 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46699 * 300.00143 * 1 2 3 29 29 H 1.09006 * 109.47048 * 59.99515 * 1 2 3 30 30 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47157 * 240.00125 * 2 1 3 32 32 H 1.08998 * 109.47188 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47070 * 299.99860 * 3 2 1 34 34 H 1.09000 * 109.47256 * 60.00198 * 3 2 1 35 35 H 1.07994 * 125.56109 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.06201 * 179.97438 * 6 5 4 37 37 H 1.08009 * 126.45698 * 179.76163 * 7 6 5 38 38 H 0.96992 * 119.99808 * 5.05638 * 11 9 8 39 39 H 1.09001 * 109.47059 * 300.00150 * 12 11 9 40 40 H 1.09000 * 109.47284 * 59.99969 * 12 11 9 41 41 H 1.07997 * 119.96344 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.03572 * 180.26875 * 15 14 13 43 43 H 0.97008 * 119.99555 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03456 * 179.97438 * 26 16 15 45 45 H 1.08003 * 119.95903 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.8437 -0.2764 2.4748 6 6 2.4313 -1.1679 3.3082 7 6 3.0008 -2.1766 2.5249 8 6 2.7306 -1.8685 1.2085 9 6 3.1337 -2.6503 0.0348 10 8 2.9151 -2.2247 -1.0841 11 7 3.7462 -3.8401 0.1955 12 6 4.2478 -4.5693 -0.9719 13 6 4.8840 -5.8595 -0.5230 14 6 6.2325 -5.8942 -0.2173 15 6 6.8173 -7.0737 0.1999 16 6 6.0524 -8.2285 0.3009 17 8 6.6257 -9.3909 0.7045 18 6 5.8062 -10.4452 0.8912 19 1 4.7584 -10.3653 0.6422 20 6 6.3087 -11.6318 1.4030 21 7 7.5852 -11.7291 1.7060 22 14 5.1732 -13.0922 1.6624 23 1 4.5712 -13.4879 0.3638 24 1 5.9497 -14.2309 2.2150 25 1 4.0960 -12.7187 2.6139 26 6 4.6998 -8.1916 -0.0122 27 6 4.1197 -7.0077 -0.4233 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.3207 0.6180 2.7794 36 1 2.4591 -1.1078 4.3862 37 1 3.5472 -3.0364 2.8837 38 1 3.8548 -4.2135 1.0841 39 1 3.4203 -4.7882 -1.6467 40 1 4.9880 -3.9600 -1.4905 41 1 6.8278 -4.9970 -0.3011 42 1 7.8693 -7.0991 0.4426 43 1 7.9368 -12.5594 2.0637 44 1 4.1025 -9.0881 0.0650 45 1 3.0680 -6.9787 -0.6673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179169213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:01 Heat of formation + Delta-G solvation = -15.087652 kcal Electronic energy + Delta-G solvation = -26461.004781 eV Core-core repulsion = 22637.090238 eV Total energy + Delta-G solvation = -3823.914543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.42936 -40.91166 -40.07430 -38.45786 -36.48090 -35.56429 -34.27810 -31.92267 -31.75319 -30.74886 -29.95540 -28.23754 -27.64525 -26.30043 -23.82514 -23.65085 -23.01739 -22.18006 -21.23702 -20.38248 -19.85888 -18.91290 -18.59619 -17.06684 -16.79471 -16.70850 -16.32981 -16.20335 -15.70881 -15.66529 -15.53272 -15.39693 -15.08674 -14.86309 -14.68871 -14.39887 -14.22956 -13.71932 -13.61213 -13.58220 -13.30436 -13.18980 -13.08406 -13.00944 -12.96168 -12.54357 -12.39069 -12.29724 -12.24335 -12.14838 -12.07069 -11.20819 -10.98262 -10.77848 -10.18113 -9.81634 -9.66213 -9.13210 -9.02252 -8.47987 -6.16263 0.49234 0.52644 0.57532 1.36064 1.45595 1.51903 1.73037 1.85726 2.17489 2.38989 2.41805 2.86129 3.17414 3.48134 3.68486 3.75672 3.91752 3.97338 4.02008 4.15180 4.16749 4.21608 4.43817 4.43830 4.49088 4.56096 4.61522 4.68049 4.73168 4.76683 4.79820 4.94252 5.03238 5.05278 5.14041 5.18253 5.22612 5.25878 5.33002 5.39577 5.51817 5.68689 5.74053 5.85882 6.01355 6.07959 6.15215 6.38144 6.53901 6.96617 7.15111 7.75553 8.74452 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.556730 B =13378.900322 C =13673.028738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 C -0.152 4.152 4 N -0.406 5.406 5 C 0.026 3.974 6 C -0.222 4.222 7 C -0.141 4.141 8 C -0.087 4.087 9 C 0.585 3.415 10 O -0.586 6.586 11 N -0.704 5.704 12 C 0.188 3.812 13 C -0.184 4.184 14 C -0.042 4.042 15 C -0.204 4.204 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.243 4.243 27 C -0.045 4.045 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.197 0.803 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 24.681 0.233 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.003 4.003 3 C -0.210 4.210 4 N -0.079 5.079 5 C -0.110 4.110 6 C -0.245 4.245 7 C -0.168 4.168 8 C -0.200 4.200 9 C 0.375 3.625 10 O -0.469 6.469 11 N -0.354 5.354 12 C 0.066 3.934 13 C -0.185 4.185 14 C -0.061 4.061 15 C -0.223 4.223 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.263 4.263 27 C -0.064 4.064 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.213 0.787 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.247 0.753 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.165 0.835 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.293 24.922 -0.805 28.741 hybrid contribution 0.147 -1.401 0.554 1.514 sum -14.146 23.521 -0.251 27.448 Atomic orbital electron populations 1.22110 0.92126 1.02319 1.04459 1.22038 0.96411 0.94943 0.86928 1.22104 1.01176 0.93065 1.04607 1.44387 1.39221 1.16919 1.07382 1.22471 1.04466 1.02227 0.81869 1.21142 1.06103 0.96877 1.00409 1.21663 1.03138 1.01411 0.90589 1.20035 1.11221 0.94053 0.94674 1.17272 0.77030 0.81023 0.87190 1.90683 1.58121 1.71255 1.26887 1.45836 1.58517 1.19470 1.11613 1.19920 0.97924 0.88700 0.86894 1.19457 0.94091 0.94737 1.10198 1.20881 0.94330 0.96311 0.94553 1.20448 1.00160 0.91385 1.10316 1.19996 0.92902 0.87156 0.92712 1.83948 1.36992 1.16713 1.75730 1.21790 0.93083 0.89522 1.44636 0.87930 1.26584 0.98489 1.01386 0.95502 1.70174 1.14695 1.28371 1.42321 0.84661 0.76943 0.75159 0.79573 1.18217 1.19723 1.18103 1.21240 0.94704 1.00145 1.10183 1.20932 0.99695 0.90873 0.94856 0.90428 0.89010 0.93729 0.87906 0.93301 0.88976 0.90239 0.78652 0.82200 0.83054 0.75251 0.90921 0.90552 0.83469 0.86581 0.91788 0.86128 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.30 71.98 0.67 -1.28 16 2 C 0.10 1.67 3.48 44.99 0.16 1.83 16 3 C -0.15 -1.80 9.16 71.98 0.66 -1.14 16 4 N -0.41 -8.02 2.64 -488.69 -1.29 -9.31 16 5 C 0.03 0.39 10.33 83.48 0.86 1.26 16 6 C -0.22 -3.76 10.81 22.01 0.24 -3.52 16 7 C -0.14 -2.89 10.35 22.57 0.23 -2.66 16 8 C -0.09 -2.07 6.89 40.35 0.28 -1.79 16 9 C 0.59 15.74 7.77 86.45 0.67 16.41 16 10 O -0.59 -18.61 14.37 -4.33 -0.06 -18.68 16 11 N -0.70 -16.90 5.52 -470.82 -2.60 -19.50 16 12 C 0.19 4.70 5.80 85.63 0.50 5.20 16 13 C -0.18 -5.36 5.25 -19.83 -0.10 -5.47 16 14 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 15 C -0.20 -8.21 9.99 22.39 0.22 -7.99 16 16 C 0.12 5.89 6.65 22.58 0.15 6.04 16 17 O -0.23 -13.35 9.76 -22.75 -0.22 -13.57 16 18 C -0.41 -23.56 9.49 67.92 0.64 -22.91 16 19 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 20 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 21 N -0.92 -55.48 13.67 21.61 0.30 -55.18 16 22 Si 1.02 42.03 29.55 68.60 2.03 44.06 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 C -0.24 -10.08 9.17 22.39 0.21 -9.87 16 27 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 28 H 0.08 0.72 8.01 -2.39 -0.02 0.70 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 2.41 5.33 -2.39 -0.01 2.40 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.65 7.71 -2.39 -0.02 0.63 16 35 H 0.20 1.54 7.91 -2.91 -0.02 1.52 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.15 2.69 7.49 -2.91 -0.02 2.67 16 38 H 0.41 8.92 7.41 -92.71 -0.69 8.23 16 39 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 40 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16 45 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -73.14 380.13 4.76 -68.38 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.33 Total: 32.78 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 6.28 Total: -28.97 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.59 Total: -83.99 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.28 Total: -32.25 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -73.14 4.76 -68.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179169213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.293 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds