Wall clock time and date at job start Tue Mar 31 2020 15:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46771 * 2 1 4 4 H 1.08992 * 109.46899 * 55.00276 * 3 2 1 5 5 C 1.50697 * 109.46793 * 175.00284 * 3 2 1 6 6 H 1.07998 * 120.00396 * 119.99704 * 5 3 2 7 7 C 1.37883 * 120.00113 * 300.00168 * 5 3 2 8 8 N 1.31513 * 119.99600 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00155 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47086 * 59.99786 * 9 7 5 11 11 H 1.48494 * 109.47107 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47084 * 300.00065 * 9 7 5 13 13 N 1.46496 * 109.47126 * 294.99965 * 3 2 1 14 14 C 1.34785 * 119.99871 * 85.00391 * 13 3 2 15 15 O 1.21573 * 119.99843 * 359.97438 * 14 13 3 16 16 C 1.47679 * 119.99891 * 179.97438 * 14 13 3 17 17 C 1.39143 * 120.26313 * 353.68005 * 16 14 13 18 18 C 1.40360 * 118.00685 * 179.78528 * 17 16 14 19 19 C 1.40647 * 121.08935 * 180.18926 * 18 17 16 20 20 C 1.35936 * 119.83917 * 180.32615 * 19 18 17 21 21 C 1.39935 * 120.77494 * 0.02562 * 20 19 18 22 22 O 1.35770 * 119.59251 * 180.02562 * 21 20 19 23 23 C 1.42904 * 117.00087 * 0.02562 * 22 21 20 24 24 C 1.37694 * 120.80874 * 359.97438 * 21 20 19 25 25 C 1.40317 * 119.68442 * 0.04435 * 24 21 20 26 26 N 1.33864 * 120.73026 * 179.97438 * 25 24 21 27 27 C 1.30831 * 121.71929 * 180.02562 * 26 25 24 28 28 C 1.50695 * 119.24577 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.47376 * 59.99686 * 1 2 3 30 30 H 1.08999 * 109.47224 * 299.99817 * 1 2 3 31 31 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47415 * 120.00224 * 2 1 3 33 33 H 1.09001 * 109.47037 * 240.00687 * 2 1 3 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00542 * 265.00483 * 13 3 2 36 36 H 1.07998 * 120.99656 * 0.03006 * 17 16 14 37 37 H 1.07993 * 120.08110 * 0.30467 * 19 18 17 38 38 H 1.08000 * 119.61108 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47206 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46481 * 300.00142 * 23 22 21 41 41 H 1.08996 * 109.47175 * 59.99792 * 23 22 21 42 42 H 1.08005 * 120.15311 * 180.02562 * 24 21 20 43 43 H 1.09008 * 109.46945 * 263.33181 * 28 27 26 44 44 H 1.08998 * 109.47444 * 23.33093 * 28 27 26 45 45 H 1.09007 * 109.47251 * 143.33365 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3978 0.2178 2.6507 12 1 6.5975 0.1474 0.2346 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6645 -1.3669 15 8 -0.3416 2.6319 -0.4320 16 6 0.0444 3.3252 -2.6286 17 6 0.9715 3.4817 -3.6543 18 6 0.5482 4.1123 -4.8347 19 6 1.4302 4.3008 -5.9139 20 6 0.9951 4.9207 -7.0427 21 6 -0.3239 5.3765 -7.1462 22 8 -0.7331 5.9920 -8.2851 23 6 0.2334 6.1366 -9.3277 24 6 -1.2120 5.2074 -6.1077 25 6 -0.7910 4.5714 -4.9299 26 7 -1.6368 4.3964 -3.9071 27 6 -1.2648 3.8066 -2.8002 28 6 -2.2629 3.6395 -1.6836 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8293 -0.0613 2.9497 35 1 2.2717 2.1232 -1.9978 36 1 1.9852 3.1251 -3.5470 37 1 2.4507 3.9542 -5.8458 38 1 1.6754 5.0631 -7.8693 39 1 -0.2225 6.6437 -10.1780 40 1 1.0757 6.7247 -8.9632 41 1 0.5844 5.1521 -9.6368 42 1 -2.2278 5.5630 -6.1991 43 1 -2.1393 4.4471 -0.9619 44 1 -3.2731 3.6686 -2.0919 45 1 -2.0983 2.6821 -1.1892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183872133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:56 Heat of formation + Delta-G solvation = -22.413437 kcal Electronic energy + Delta-G solvation = -27481.089154 eV Core-core repulsion = 23656.856941 eV Total energy + Delta-G solvation = -3824.232213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14600 -39.80859 -38.69744 -36.35218 -35.09188 -33.69226 -32.41034 -31.50730 -31.08361 -30.11400 -27.85984 -27.50854 -26.81217 -24.29169 -23.09437 -22.64299 -22.13273 -20.85873 -19.51464 -18.94050 -17.95783 -17.07540 -16.57996 -16.11613 -16.10323 -15.60832 -15.17675 -15.07114 -14.92254 -14.44533 -14.18876 -14.07909 -13.57991 -13.21969 -12.93460 -12.88282 -12.70672 -12.70435 -12.33119 -12.07523 -11.98645 -11.63606 -11.55300 -11.46350 -11.27746 -11.03030 -11.00085 -10.86460 -10.37204 -10.24801 -10.14487 -9.67360 -9.64601 -9.10678 -8.89545 -8.60871 -8.53092 -8.14980 -7.86973 -6.16725 -4.26597 0.17670 0.60861 1.78829 2.57065 2.86018 3.21965 3.28015 3.28392 3.59291 3.90297 4.11938 4.25674 4.33274 4.36208 4.56985 4.61856 4.71826 4.76157 4.76934 4.90590 4.94726 5.09466 5.14754 5.43523 5.52120 5.64727 5.75996 5.84070 5.93631 5.96965 6.03899 6.12023 6.29340 6.36357 6.38486 6.44187 6.61466 6.74324 7.00943 7.03119 7.15620 7.31431 7.37622 7.56555 7.66458 7.84739 7.94656 8.13288 8.56275 8.70966 9.01430 9.40540 10.88465 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002950 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.578472 B = 9488.778977 C =10880.230572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.548 3.452 15 O -0.533 6.533 16 C -0.187 4.187 17 C -0.009 4.009 18 C -0.148 4.148 19 C -0.041 4.041 20 C -0.202 4.202 21 C 0.148 3.852 22 O -0.314 6.314 23 C 0.026 3.974 24 C -0.150 4.150 25 C 0.184 3.816 26 N -0.494 5.494 27 C 0.225 3.775 28 C -0.112 4.112 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.386 0.614 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.142 0.858 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 8.100 -19.385 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.333 3.667 15 O -0.413 6.413 16 C -0.192 4.192 17 C -0.035 4.035 18 C -0.151 4.151 19 C -0.060 4.060 20 C -0.220 4.220 21 C 0.101 3.899 22 O -0.227 6.227 23 C -0.069 4.069 24 C -0.169 4.169 25 C 0.063 3.937 26 N -0.204 5.204 27 C 0.072 3.928 28 C -0.168 4.168 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.896 8.376 -18.735 21.352 hybrid contribution 2.610 -0.322 -0.446 2.667 sum -3.286 8.054 -19.181 21.061 Atomic orbital electron populations 1.21852 0.98277 0.98174 1.01242 1.21941 0.92706 0.99668 1.02344 1.18835 0.94264 0.89229 0.80679 0.92973 1.21166 0.90627 1.39344 1.06396 0.92206 1.24871 0.98585 0.94735 0.95359 1.69876 1.35247 1.37336 1.09306 0.86522 0.84849 0.78320 0.77498 1.20188 1.21094 1.20171 1.46480 1.14160 1.55456 1.18658 1.17814 0.83137 0.79359 0.86413 1.90703 1.50532 1.60364 1.39712 1.21146 0.95836 1.05197 0.97054 1.22019 0.99330 0.91602 0.90578 1.18726 0.95408 1.04812 0.96116 1.20890 0.99039 0.94745 0.91299 1.21041 0.95405 1.05107 1.00491 1.18899 0.92289 0.92303 0.86416 1.86069 1.39694 1.73712 1.23222 1.23109 0.92838 1.01762 0.89231 1.19973 1.00564 1.05666 0.90746 1.18496 0.88788 0.93894 0.92561 1.67907 1.35516 1.16768 1.00179 1.21668 0.91846 0.86982 0.92288 1.21151 0.95513 1.05977 0.94199 0.94320 0.92960 0.95802 0.88183 0.95059 0.92436 0.78136 0.83689 0.84484 0.84810 0.88084 0.92438 0.92430 0.83975 0.89699 0.91607 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.98 11.29 55.43 0.63 -23.36 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.85 4.97 -55.93 -0.28 -14.12 16 14 C 0.55 10.51 6.26 -12.40 -0.08 10.43 16 15 O -0.53 -11.41 10.43 5.30 0.06 -11.36 16 16 C -0.19 -3.06 5.88 -104.84 -0.62 -3.67 16 17 C -0.01 -0.12 9.37 -38.45 -0.36 -0.48 16 18 C -0.15 -1.95 5.74 -106.79 -0.61 -2.56 16 19 C -0.04 -0.41 9.75 -39.50 -0.39 -0.80 16 20 C -0.20 -1.87 8.94 -39.77 -0.36 -2.23 16 21 C 0.15 1.62 6.67 -39.15 -0.26 1.36 16 22 O -0.31 -3.06 10.47 -19.02 -0.20 -3.26 16 23 C 0.03 0.14 9.80 101.05 0.99 1.13 16 24 C -0.15 -1.92 9.93 -39.00 -0.39 -2.31 16 25 C 0.18 2.69 6.60 -84.80 -0.56 2.13 16 26 N -0.49 -7.89 10.20 -6.95 -0.07 -7.97 16 27 C 0.22 3.66 6.82 -82.15 -0.56 3.10 16 28 C -0.11 -1.69 8.83 36.00 0.32 -1.38 16 29 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 30 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.57 6.65 -40.82 -0.27 6.30 16 36 H 0.15 1.63 6.53 -52.49 -0.34 1.29 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.84 6.23 -52.49 -0.33 0.51 16 39 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.25 7.63 -51.93 -0.40 -0.14 16 41 H 0.06 0.25 7.64 -51.93 -0.40 -0.14 16 42 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.11 1.85 5.80 -51.93 -0.30 1.54 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -30.17 363.40 -8.60 -38.77 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.94 Total: 7.74 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.25 Total: -6.95 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.28 Total: -45.45 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.14 Total: -14.62 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.17 -8.60 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183872133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.360 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds