Wall clock time and date at job start Tue Mar 31 2020 15:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46771 * 2 1 4 4 H 1.08992 * 109.46899 * 55.00276 * 3 2 1 5 5 C 1.50697 * 109.46793 * 175.00284 * 3 2 1 6 6 H 1.07998 * 120.00396 * 119.99704 * 5 3 2 7 7 C 1.37883 * 120.00113 * 300.00168 * 5 3 2 8 8 N 1.31513 * 119.99600 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00155 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47086 * 59.99786 * 9 7 5 11 11 H 1.48494 * 109.47107 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47084 * 300.00065 * 9 7 5 13 13 N 1.46496 * 109.47126 * 294.99965 * 3 2 1 14 14 C 1.34785 * 119.99871 * 85.00391 * 13 3 2 15 15 O 1.21573 * 119.99843 * 359.97438 * 14 13 3 16 16 C 1.47679 * 119.99891 * 179.97438 * 14 13 3 17 17 C 1.39143 * 120.26313 * 353.68005 * 16 14 13 18 18 C 1.40360 * 118.00685 * 179.78528 * 17 16 14 19 19 C 1.40647 * 121.08935 * 180.18926 * 18 17 16 20 20 C 1.35936 * 119.83917 * 180.32615 * 19 18 17 21 21 C 1.39935 * 120.77494 * 0.02562 * 20 19 18 22 22 O 1.35770 * 119.59251 * 180.02562 * 21 20 19 23 23 C 1.42904 * 117.00087 * 0.02562 * 22 21 20 24 24 C 1.37694 * 120.80874 * 359.97438 * 21 20 19 25 25 C 1.40317 * 119.68442 * 0.04435 * 24 21 20 26 26 N 1.33864 * 120.73026 * 179.97438 * 25 24 21 27 27 C 1.30831 * 121.71929 * 180.02562 * 26 25 24 28 28 C 1.50695 * 119.24577 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.47376 * 59.99686 * 1 2 3 30 30 H 1.08999 * 109.47224 * 299.99817 * 1 2 3 31 31 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47415 * 120.00224 * 2 1 3 33 33 H 1.09001 * 109.47037 * 240.00687 * 2 1 3 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00542 * 265.00483 * 13 3 2 36 36 H 1.07998 * 120.99656 * 0.03006 * 17 16 14 37 37 H 1.07993 * 120.08110 * 0.30467 * 19 18 17 38 38 H 1.08000 * 119.61108 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47206 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.46481 * 300.00142 * 23 22 21 41 41 H 1.08996 * 109.47175 * 59.99792 * 23 22 21 42 42 H 1.08005 * 120.15311 * 180.02562 * 24 21 20 43 43 H 1.09008 * 109.46945 * 263.33181 * 28 27 26 44 44 H 1.08998 * 109.47444 * 23.33093 * 28 27 26 45 45 H 1.09007 * 109.47251 * 143.33365 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3978 0.2178 2.6507 12 1 6.5975 0.1474 0.2346 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6645 -1.3669 15 8 -0.3416 2.6319 -0.4320 16 6 0.0444 3.3252 -2.6286 17 6 0.9715 3.4817 -3.6543 18 6 0.5482 4.1123 -4.8347 19 6 1.4302 4.3008 -5.9139 20 6 0.9951 4.9207 -7.0427 21 6 -0.3239 5.3765 -7.1462 22 8 -0.7331 5.9920 -8.2851 23 6 0.2334 6.1366 -9.3277 24 6 -1.2120 5.2074 -6.1077 25 6 -0.7910 4.5714 -4.9299 26 7 -1.6368 4.3964 -3.9071 27 6 -1.2648 3.8066 -2.8002 28 6 -2.2629 3.6395 -1.6836 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8293 -0.0613 2.9497 35 1 2.2717 2.1232 -1.9978 36 1 1.9852 3.1251 -3.5470 37 1 2.4507 3.9542 -5.8458 38 1 1.6754 5.0631 -7.8693 39 1 -0.2225 6.6437 -10.1780 40 1 1.0757 6.7247 -8.9632 41 1 0.5844 5.1521 -9.6368 42 1 -2.2278 5.5630 -6.1991 43 1 -2.1393 4.4471 -0.9619 44 1 -3.2731 3.6686 -2.0919 45 1 -2.0983 2.6821 -1.1892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183872133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:54 Heat of formation + Delta-G solvation = -40.991701 kcal Electronic energy + Delta-G solvation = -27481.894768 eV Core-core repulsion = 23656.856941 eV Total energy + Delta-G solvation = -3825.037827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18368 -40.89353 -39.92695 -37.43993 -36.72072 -34.93263 -34.08809 -32.80266 -32.48331 -31.17578 -29.19224 -28.45969 -28.07863 -25.50321 -24.79484 -23.61946 -23.19235 -22.35282 -21.22309 -20.00783 -19.23061 -18.12023 -17.95864 -17.28498 -16.94135 -16.78581 -16.76870 -16.44994 -15.99732 -15.87140 -15.41031 -15.20050 -14.76442 -14.56234 -14.31381 -14.04769 -13.94793 -13.76602 -13.41906 -13.35794 -13.24413 -13.14865 -12.90352 -12.80214 -12.72872 -12.62739 -12.17568 -12.13829 -12.01691 -11.90890 -11.55165 -11.19515 -11.04614 -10.84044 -10.51928 -10.30602 -9.68623 -9.52727 -9.05435 -8.13257 -6.30336 -0.81082 -0.43213 0.80352 1.47296 1.48705 1.53410 1.56352 2.16307 2.29665 2.34685 2.57207 3.00157 3.16588 3.26644 3.49237 3.57921 3.64109 3.78765 3.88619 4.07800 4.30275 4.37978 4.44355 4.51320 4.53803 4.61124 4.61300 4.71903 4.76506 4.78462 4.80582 4.85409 4.99860 5.08656 5.10965 5.19507 5.26653 5.31154 5.36808 5.47311 5.56817 5.61477 5.67042 5.82655 5.94410 6.19727 6.30640 6.76336 6.82728 6.96575 7.35055 7.54007 8.91752 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002950 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.578472 B = 9488.778977 C =10880.230572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.698 5.698 14 C 0.550 3.450 15 O -0.563 6.563 16 C -0.215 4.215 17 C 0.012 3.988 18 C -0.162 4.162 19 C -0.032 4.032 20 C -0.193 4.193 21 C 0.166 3.834 22 O -0.329 6.329 23 C 0.012 3.988 24 C -0.182 4.182 25 C 0.168 3.832 26 N -0.512 5.512 27 C 0.210 3.790 28 C -0.104 4.104 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 8.758 -23.191 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.347 5.347 14 C 0.337 3.663 15 O -0.445 6.445 16 C -0.220 4.220 17 C -0.014 4.014 18 C -0.164 4.164 19 C -0.050 4.050 20 C -0.211 4.211 21 C 0.117 3.883 22 O -0.242 6.242 23 C -0.082 4.082 24 C -0.202 4.202 25 C 0.046 3.954 26 N -0.222 5.222 27 C 0.058 3.942 28 C -0.161 4.161 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.190 0.810 37 H 0.192 0.808 38 H 0.191 0.809 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.153 0.847 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.405 9.055 -22.599 24.582 hybrid contribution 1.804 -0.385 0.459 1.901 sum -1.601 8.670 -22.140 23.830 Atomic orbital electron populations 1.21691 0.96963 0.99123 1.00394 1.21793 0.93791 0.99132 1.01301 1.18399 0.93687 0.89122 0.81024 0.97868 1.21539 0.91351 1.38988 1.06752 0.90856 1.25736 1.03100 0.94427 0.95078 1.70038 1.37065 1.38259 1.09832 0.85464 0.79361 0.78397 0.77509 1.19713 1.21484 1.18823 1.46167 1.14937 1.55750 1.17806 1.18198 0.82351 0.78631 0.87140 1.90692 1.51297 1.61313 1.41171 1.20792 0.96793 1.07794 0.96656 1.22301 0.99715 0.89734 0.89683 1.18933 0.95371 1.05074 0.97002 1.21291 1.00038 0.93663 0.90054 1.21457 0.94943 1.03396 1.01313 1.19051 0.92577 0.90541 0.86106 1.86076 1.41671 1.72954 1.23469 1.23505 0.92849 1.03286 0.88511 1.19990 1.01161 1.07569 0.91461 1.18830 0.89640 0.94294 0.92604 1.67873 1.36464 1.17362 1.00541 1.21668 0.92101 0.87786 0.92659 1.21005 0.96306 1.04672 0.94092 0.93863 0.95092 0.93811 0.90910 0.94157 0.92648 0.76363 0.81048 0.80809 0.80869 0.86245 0.90882 0.90834 0.84673 0.90242 0.90359 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.81 5.45 30.60 0.17 -5.65 16 3 C 0.28 13.88 2.24 44.25 0.10 13.98 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -27.86 8.73 25.60 0.22 -27.63 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -51.11 11.29 21.45 0.24 -50.87 16 9 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 N -0.70 -27.75 4.97 -449.13 -2.23 -29.98 16 14 C 0.55 21.68 6.26 86.74 0.54 22.23 16 15 O -0.56 -25.48 10.43 -3.95 -0.04 -25.53 16 16 C -0.21 -7.09 5.88 -20.00 -0.12 -7.20 16 17 C 0.01 0.30 9.37 23.00 0.22 0.51 16 18 C -0.16 -3.89 5.74 -21.27 -0.12 -4.01 16 19 C -0.03 -0.50 9.75 22.32 0.22 -0.28 16 20 C -0.19 -2.66 8.94 22.15 0.20 -2.46 16 21 C 0.17 3.16 6.67 22.55 0.15 3.31 16 22 O -0.33 -5.43 10.47 -90.98 -0.95 -6.38 16 23 C 0.01 0.08 9.80 113.37 1.11 1.19 16 24 C -0.18 -4.54 9.93 22.65 0.22 -4.31 16 25 C 0.17 4.80 6.60 40.24 0.27 5.07 16 26 N -0.51 -16.76 10.20 -175.92 -1.79 -18.55 16 27 C 0.21 7.09 6.82 43.27 0.30 7.38 16 28 C -0.10 -3.36 8.83 71.23 0.63 -2.74 16 29 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 30 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.69 16 32 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.40 13.16 6.65 -92.71 -0.62 12.54 16 36 H 0.17 3.30 6.53 -2.91 -0.02 3.28 16 37 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.17 1.03 6.23 -2.91 -0.02 1.02 16 39 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.28 7.63 -2.39 -0.02 0.26 16 41 H 0.07 0.28 7.64 -2.39 -0.02 0.26 16 42 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 3.31 5.80 -2.38 -0.01 3.29 16 Total: -1.00 -69.12 363.40 2.82 -66.30 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.42 Total: 26.36 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.16 Total: -4.16 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.78 Total: -99.40 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.99 Total: -31.91 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -69.12 2.82 -66.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183872133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.305 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds