Wall clock time and date at job start Tue Mar 31 2020 15:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08996 * 109.46576 * 55.00389 * 3 2 1 5 5 C 1.50702 * 109.47100 * 175.00065 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00383 * 5 3 2 7 7 C 1.37871 * 120.00281 * 300.00215 * 5 3 2 8 8 N 1.31519 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00252 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47013 * 89.99900 * 9 7 5 11 11 H 1.48493 * 109.47507 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46943 * 330.00409 * 9 7 5 13 13 N 1.46497 * 109.47218 * 295.00159 * 3 2 1 14 14 C 1.34780 * 119.99566 * 85.00262 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.30359 * 125.47963 * 89.69039 * 18 17 16 20 20 C 1.34138 * 108.90372 * 179.89756 * 19 18 17 21 21 C 1.35770 * 107.51336 * 0.36809 * 20 19 18 22 22 C 1.47831 * 126.58367 * 179.80400 * 21 20 19 23 23 C 1.39576 * 120.14268 * 179.70115 * 22 21 20 24 24 C 1.37965 * 119.84775 * 179.71667 * 23 22 21 25 25 C 1.38357 * 120.14811 * 0.53190 * 24 23 22 26 26 C 1.38366 * 120.29132 * 359.76613 * 25 24 23 27 27 C 1.37955 * 120.14106 * 359.95211 * 26 25 24 28 28 O 1.33994 * 125.48429 * 270.00151 * 18 17 16 29 29 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46253 * 299.99739 * 1 2 3 31 31 H 1.08997 * 109.47148 * 59.99090 * 1 2 3 32 32 H 1.09004 * 109.46993 * 240.00310 * 2 1 3 33 33 H 1.08994 * 109.47553 * 120.00597 * 2 1 3 34 34 H 0.96997 * 119.99814 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00423 * 264.99567 * 13 3 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 37 37 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 38 38 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 39 39 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 40 40 H 1.08003 * 126.24438 * 180.14675 * 20 19 18 41 41 H 1.07999 * 120.07556 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.92631 * 180.27028 * 24 23 22 43 43 H 1.07998 * 119.85727 * 179.73747 * 25 24 23 44 44 H 1.07998 * 119.92451 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.07374 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3810 10 1 6.4430 2.1127 2.0835 11 1 6.4392 -0.3113 2.1542 12 1 6.6132 0.8394 0.0268 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3667 15 8 -0.3395 2.6321 -0.4342 16 6 0.0363 3.3378 -2.6546 17 6 -1.3829 3.8938 -2.5211 18 6 -1.7816 4.5677 -3.8087 19 7 -2.3702 3.9864 -4.8162 20 6 -2.5724 4.8933 -5.7836 21 6 -2.0755 6.0777 -5.3437 22 6 -2.0742 7.3602 -6.0789 23 6 -1.5298 8.5038 -5.4923 24 6 -1.5264 9.6962 -6.1863 25 6 -2.0710 9.7625 -7.4565 26 6 -2.6178 8.6340 -8.0412 27 6 -2.6223 7.4341 -7.3604 28 8 -1.5830 5.8593 -4.1046 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0620 2.9493 35 1 2.2719 2.1233 -1.9977 36 1 0.7277 4.1531 -2.8677 37 1 0.0672 2.6132 -3.4683 38 1 -2.0740 3.0783 -2.3083 39 1 -1.4143 4.6183 -1.7074 40 1 -3.0414 4.7133 -6.7397 41 1 -1.1084 8.4544 -4.4992 42 1 -1.1016 10.5808 -5.7354 43 1 -2.0697 10.6994 -7.9938 44 1 -3.0416 8.6925 -9.0328 45 1 -3.0490 6.5538 -7.8180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183894931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:13 Heat of formation + Delta-G solvation = -5.133332 kcal Electronic energy + Delta-G solvation = -26270.693292 eV Core-core repulsion = 22447.210401 eV Total energy + Delta-G solvation = -3823.482891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47602 -39.41774 -39.11556 -35.33296 -34.96568 -33.88716 -32.47401 -32.23968 -31.39917 -30.87492 -28.56870 -27.04799 -25.12306 -23.84502 -23.07018 -22.63561 -21.69085 -21.00855 -20.12768 -19.31953 -18.12353 -17.34082 -16.68379 -16.53902 -16.13215 -15.81333 -15.30281 -15.19554 -15.13924 -14.30654 -14.30175 -13.90028 -13.72955 -13.51884 -13.36905 -13.31062 -12.87722 -12.61225 -12.17416 -11.99203 -11.86158 -11.52800 -11.51483 -11.46762 -11.24940 -11.05748 -10.96551 -10.83824 -10.70249 -10.32313 -10.18812 -10.13747 -9.62124 -9.42304 -9.08146 -9.02103 -8.50158 -8.30034 -7.83342 -6.12841 -4.22260 0.29879 0.94304 1.65142 2.34185 2.51781 3.23917 3.30803 3.32289 3.37275 3.42160 3.73817 4.19608 4.26578 4.40673 4.48453 4.50683 4.66635 4.75603 4.92792 4.96615 4.99197 5.16701 5.18714 5.27561 5.40449 5.50366 5.58572 5.63737 5.72535 5.86768 5.94482 6.00500 6.05447 6.10936 6.13582 6.40680 6.46324 6.47116 6.67127 7.05107 7.20110 7.37062 7.44880 7.55454 7.61734 7.72761 7.89898 8.18276 8.65393 8.76668 9.11372 9.45102 10.92390 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.002040 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.995312 B =13725.209726 C =14686.950883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.504 3.496 15 O -0.550 6.550 16 C -0.140 4.140 17 C -0.008 4.008 18 C 0.212 3.788 19 N -0.480 5.480 20 C -0.016 4.016 21 C -0.019 4.019 22 C -0.009 4.009 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.099 4.099 28 O -0.193 6.193 29 H 0.022 0.978 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.389 0.611 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.185 0.815 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 15.308 -19.447 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.289 3.711 15 O -0.429 6.429 16 C -0.182 4.182 17 C -0.047 4.047 18 C 0.006 3.994 19 N -0.208 5.208 20 C -0.156 4.156 21 C -0.072 4.072 22 C -0.009 4.009 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.117 4.117 28 O -0.080 6.080 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.221 0.779 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.202 0.798 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.560 14.547 -18.527 26.240 hybrid contribution 1.511 0.675 -0.375 1.697 sum -10.049 15.222 -18.902 26.267 Atomic orbital electron populations 1.21839 0.98298 0.98079 1.01242 1.21935 0.92667 0.99796 1.02279 1.18796 0.94179 0.89224 0.81006 0.93251 1.21234 0.90758 1.39018 1.06269 0.92120 1.24889 0.98585 0.94817 0.95427 1.69895 1.35111 1.37559 1.09339 0.86461 0.84901 0.77635 0.78173 1.20588 1.21081 1.19881 1.46491 1.14580 1.55768 1.18602 1.20103 0.82946 0.79471 0.88619 1.90684 1.51380 1.60203 1.40627 1.21675 0.96059 1.01815 0.98615 1.19916 0.97499 1.00140 0.87108 1.26590 0.96768 0.77781 0.98239 1.70421 1.16762 1.33002 1.00663 1.23334 1.03702 0.88048 1.00506 1.21370 1.04399 0.96559 0.84868 1.17638 1.01108 0.88740 0.93453 1.21337 0.98409 0.91960 1.00264 1.21138 0.99539 0.97723 0.94944 1.21320 0.97814 0.98707 0.95431 1.21066 0.99819 0.92337 1.00115 1.21053 0.99081 0.98694 0.92863 1.84455 1.62758 1.30619 1.30208 0.95862 0.93139 0.94218 0.95053 0.88311 0.92565 0.77895 0.89038 0.88647 0.86510 0.87902 0.79784 0.85283 0.85396 0.85637 0.85256 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.52 37.16 0.32 -2.70 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.71 -14.05 5.02 -54.93 -0.28 -14.33 16 14 C 0.50 9.27 6.40 -10.98 -0.07 9.20 16 15 O -0.55 -11.90 13.12 5.56 0.07 -11.83 16 16 C -0.14 -1.90 5.68 -27.88 -0.16 -2.06 16 17 C -0.01 -0.11 5.13 -27.89 -0.14 -0.25 16 18 C 0.21 2.82 7.58 -12.90 -0.10 2.72 16 19 N -0.48 -6.62 11.27 -10.82 -0.12 -6.74 16 20 C -0.02 -0.18 11.29 -17.43 -0.20 -0.38 16 21 C -0.02 -0.22 7.07 -36.54 -0.26 -0.48 16 22 C -0.01 -0.09 5.87 -104.98 -0.62 -0.70 16 23 C -0.10 -0.92 9.73 -39.18 -0.38 -1.30 16 24 C -0.12 -0.83 10.03 -39.64 -0.40 -1.22 16 25 C -0.11 -0.71 10.04 -39.49 -0.40 -1.11 16 26 C -0.12 -0.72 10.03 -39.64 -0.40 -1.11 16 27 C -0.10 -0.74 9.57 -39.19 -0.38 -1.12 16 28 O -0.19 -2.53 10.59 4.24 0.04 -2.49 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 35 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.12 1.57 8.10 -51.93 -0.42 1.15 16 39 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 40 H 0.19 1.47 7.30 -52.48 -0.38 1.09 16 41 H 0.13 1.15 7.95 -52.49 -0.42 0.73 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.71 7.04 -52.49 -0.37 0.34 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -31.36 377.65 -9.12 -40.48 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.26 Total: 7.42 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.87 Total: -9.78 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.23 Total: -44.92 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.12 Total: -14.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.36 -9.12 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.342 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds