Wall clock time and date at job start Tue Mar 31 2020 15:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08996 * 109.46576 * 55.00389 * 3 2 1 5 5 C 1.50702 * 109.47100 * 175.00065 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00383 * 5 3 2 7 7 C 1.37871 * 120.00281 * 300.00215 * 5 3 2 8 8 N 1.31519 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00252 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47013 * 89.99900 * 9 7 5 11 11 H 1.48493 * 109.47507 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46943 * 330.00409 * 9 7 5 13 13 N 1.46497 * 109.47218 * 295.00159 * 3 2 1 14 14 C 1.34780 * 119.99566 * 85.00262 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.30359 * 125.47963 * 89.69039 * 18 17 16 20 20 C 1.34138 * 108.90372 * 179.89756 * 19 18 17 21 21 C 1.35770 * 107.51336 * 0.36809 * 20 19 18 22 22 C 1.47831 * 126.58367 * 179.80400 * 21 20 19 23 23 C 1.39576 * 120.14268 * 179.70115 * 22 21 20 24 24 C 1.37965 * 119.84775 * 179.71667 * 23 22 21 25 25 C 1.38357 * 120.14811 * 0.53190 * 24 23 22 26 26 C 1.38366 * 120.29132 * 359.76613 * 25 24 23 27 27 C 1.37955 * 120.14106 * 359.95211 * 26 25 24 28 28 O 1.33994 * 125.48429 * 270.00151 * 18 17 16 29 29 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46253 * 299.99739 * 1 2 3 31 31 H 1.08997 * 109.47148 * 59.99090 * 1 2 3 32 32 H 1.09004 * 109.46993 * 240.00310 * 2 1 3 33 33 H 1.08994 * 109.47553 * 120.00597 * 2 1 3 34 34 H 0.96997 * 119.99814 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00423 * 264.99567 * 13 3 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 37 37 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 38 38 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 39 39 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 40 40 H 1.08003 * 126.24438 * 180.14675 * 20 19 18 41 41 H 1.07999 * 120.07556 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.92631 * 180.27028 * 24 23 22 43 43 H 1.07998 * 119.85727 * 179.73747 * 25 24 23 44 44 H 1.07998 * 119.92451 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.07374 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3810 10 1 6.4430 2.1127 2.0835 11 1 6.4392 -0.3113 2.1542 12 1 6.6132 0.8394 0.0268 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3667 15 8 -0.3395 2.6321 -0.4342 16 6 0.0363 3.3378 -2.6546 17 6 -1.3829 3.8938 -2.5211 18 6 -1.7816 4.5677 -3.8087 19 7 -2.3702 3.9864 -4.8162 20 6 -2.5724 4.8933 -5.7836 21 6 -2.0755 6.0777 -5.3437 22 6 -2.0742 7.3602 -6.0789 23 6 -1.5298 8.5038 -5.4923 24 6 -1.5264 9.6962 -6.1863 25 6 -2.0710 9.7625 -7.4565 26 6 -2.6178 8.6340 -8.0412 27 6 -2.6223 7.4341 -7.3604 28 8 -1.5830 5.8593 -4.1046 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0620 2.9493 35 1 2.2719 2.1233 -1.9977 36 1 0.7277 4.1531 -2.8677 37 1 0.0672 2.6132 -3.4683 38 1 -2.0740 3.0783 -2.3083 39 1 -1.4143 4.6183 -1.7074 40 1 -3.0414 4.7133 -6.7397 41 1 -1.1084 8.4544 -4.4992 42 1 -1.1016 10.5808 -5.7354 43 1 -2.0697 10.6994 -7.9938 44 1 -3.0416 8.6925 -9.0328 45 1 -3.0490 6.5538 -7.8180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183894931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:12 Heat of formation + Delta-G solvation = -24.947603 kcal Electronic energy + Delta-G solvation = -26271.552503 eV Core-core repulsion = 22447.210401 eV Total energy + Delta-G solvation = -3824.342102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.40236 -40.71836 -39.94822 -37.06578 -35.97924 -34.97127 -34.27075 -33.21147 -32.57660 -31.92831 -29.63576 -28.75106 -26.33046 -24.81878 -24.55281 -23.46320 -22.49110 -22.05030 -21.66396 -21.02902 -19.02019 -18.75329 -17.82723 -17.57820 -17.19952 -17.05343 -16.81393 -16.45489 -16.05378 -15.85402 -15.11708 -14.99639 -14.84064 -14.61470 -14.39889 -14.17768 -14.09428 -13.89144 -13.62117 -13.39891 -13.27458 -13.14225 -12.85272 -12.68419 -12.45960 -12.43011 -12.20705 -12.14135 -12.04683 -12.00606 -11.62902 -11.54827 -11.03506 -10.88203 -10.64599 -10.48334 -9.95531 -9.59309 -9.06337 -8.14840 -6.31759 -0.41195 0.41311 0.85556 1.44505 1.45099 1.45867 1.55792 1.63576 1.87741 2.36796 2.61376 2.85504 3.05382 3.14761 3.52054 3.77248 3.88552 3.93087 4.00654 4.09288 4.16042 4.25858 4.41556 4.45846 4.51680 4.53127 4.60765 4.61632 4.75765 4.80419 4.84906 4.91506 4.97690 5.07743 5.10459 5.21609 5.30126 5.45397 5.47094 5.49669 5.53945 5.58954 5.65545 5.82807 5.95008 5.96165 6.19846 6.62217 6.76832 7.01506 7.35347 7.61211 8.90256 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.002040 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.995312 B =13725.209726 C =14686.950883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.706 5.706 14 C 0.503 3.497 15 O -0.584 6.584 16 C -0.123 4.123 17 C -0.001 4.001 18 C 0.198 3.802 19 N -0.497 5.497 20 C -0.026 4.026 21 C -0.018 4.018 22 C -0.037 4.037 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.099 4.099 28 O -0.205 6.205 29 H 0.043 0.957 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.215 0.785 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 16.644 -22.677 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.186 1.186 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.466 6.466 16 C -0.163 4.163 17 C -0.040 4.040 18 C -0.007 4.007 19 N -0.226 5.226 20 C -0.166 4.166 21 C -0.070 4.070 22 C -0.038 4.038 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.117 4.117 28 O -0.093 6.093 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.232 0.768 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.339 15.903 -21.798 29.269 hybrid contribution 1.367 0.399 0.553 1.527 sum -9.972 16.302 -21.246 28.576 Atomic orbital electron populations 1.21685 0.96832 0.99144 1.00461 1.21788 0.93896 0.99211 1.01195 1.18364 0.93513 0.89209 0.81545 0.98165 1.21594 0.91601 1.38765 1.06589 0.91110 1.25760 1.03171 0.94492 0.95149 1.70048 1.36963 1.38374 1.09859 0.85401 0.79355 0.77373 0.78530 1.20466 1.21062 1.18556 1.46265 1.15686 1.55980 1.17582 1.20871 0.81801 0.78541 0.89814 1.90675 1.52232 1.61239 1.42434 1.21552 0.96664 1.02328 0.95779 1.19758 0.97016 0.99891 0.87287 1.26405 0.97988 0.78028 0.98319 1.70392 1.16940 1.33976 1.01311 1.23808 1.04069 0.87475 1.01235 1.21888 1.03347 0.97596 0.84175 1.17829 1.03247 0.88104 0.94608 1.21425 0.99202 0.92893 1.00332 1.21396 0.99616 0.97551 0.95520 1.21729 0.96243 0.99952 0.94917 1.21471 0.99073 0.91657 1.01163 1.21357 0.98313 1.00122 0.91946 1.84439 1.63089 1.30537 1.31192 0.93775 0.95435 0.93405 0.94169 0.91152 0.92660 0.76154 0.87004 0.86818 0.87157 0.88191 0.76819 0.86332 0.83751 0.82919 0.82361 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.52 71.98 0.61 -4.90 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.28 13.98 2.24 44.25 0.10 14.08 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.91 -52.13 11.29 21.45 0.24 -51.89 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.71 -28.04 5.02 -446.09 -2.24 -30.28 16 14 C 0.50 18.51 6.40 87.66 0.56 19.07 16 15 O -0.58 -26.00 13.12 -3.03 -0.04 -26.04 16 16 C -0.12 -3.19 5.68 29.85 0.17 -3.02 16 17 C 0.00 -0.03 5.13 29.85 0.15 0.13 16 18 C 0.20 5.22 7.58 88.33 0.67 5.89 16 19 N -0.50 -13.34 11.27 -302.87 -3.41 -16.75 16 20 C -0.03 -0.57 11.29 83.77 0.95 0.38 16 21 C -0.02 -0.40 7.07 24.24 0.17 -0.23 16 22 C -0.04 -0.69 5.87 -20.09 -0.12 -0.81 16 23 C -0.12 -2.13 9.73 22.53 0.22 -1.91 16 24 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 25 C -0.11 -1.04 10.04 22.33 0.22 -0.81 16 26 C -0.12 -1.06 10.03 22.23 0.22 -0.84 16 27 C -0.10 -1.26 9.57 22.53 0.22 -1.04 16 28 O -0.21 -5.40 10.59 -7.73 -0.08 -5.48 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 31 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 32 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 34 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.40 13.55 8.54 -92.71 -0.79 12.76 16 36 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.11 3.00 8.10 -2.39 -0.02 2.98 16 39 H 0.10 2.62 8.10 -2.39 -0.02 2.60 16 40 H 0.22 2.94 7.30 -2.91 -0.02 2.92 16 41 H 0.12 2.21 7.95 -2.91 -0.02 2.19 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 44 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 45 H 0.15 1.20 7.04 -2.91 -0.02 1.18 16 Total: -1.00 -69.88 377.65 1.92 -67.96 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.22 Total: 26.84 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.21 Total: -8.37 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -5.41 Total: -98.93 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.12 Total: -31.52 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.88 1.92 -67.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.013 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds