Wall clock time and date at job start Tue Mar 31 2020 15:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 N 1.30352 * 125.48299 * 89.69132 * 18 17 16 20 20 C 1.34148 * 108.90507 * 179.89374 * 19 18 17 21 21 C 1.35776 * 107.51070 * 0.36576 * 20 19 18 22 22 C 1.47824 * 126.58087 * 179.79841 * 21 20 19 23 23 C 1.39578 * 120.14235 * 179.70223 * 22 21 20 24 24 C 1.37957 * 119.84921 * 179.72305 * 23 22 21 25 25 C 1.38358 * 120.14796 * 0.53046 * 24 23 22 26 26 C 1.38360 * 120.28866 * 359.76798 * 25 24 23 27 27 C 1.37954 * 120.14557 * 359.95224 * 26 25 24 28 28 O 1.33999 * 125.47825 * 270.00117 * 18 17 16 29 29 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 30 30 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 32 32 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 33 33 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 34 34 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 35 35 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 36 36 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 37 37 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 38 38 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 39 39 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 40 40 H 1.07993 * 126.24636 * 180.14752 * 20 19 18 41 41 H 1.07999 * 120.07050 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.92851 * 180.27628 * 24 23 22 43 43 H 1.08004 * 119.85653 * 179.74476 * 25 24 23 44 44 H 1.08008 * 119.92228 * 179.97438 * 26 25 24 45 45 H 1.08008 * 120.07383 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 7 -1.5544 5.8139 4.1336 20 6 -2.0323 6.0558 5.3634 21 6 -2.5397 4.8905 5.8411 22 6 -3.1686 4.6795 7.1621 23 6 -3.6529 3.4187 7.5144 24 6 -4.2337 3.2271 8.7510 25 6 -4.3465 4.2839 9.6370 26 6 -3.8740 5.5376 9.2915 27 6 -3.2860 5.7413 8.0603 28 8 -2.3595 3.9610 4.8772 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9924 1.1425 -0.6140 35 1 2.2853 2.1184 1.9978 36 1 0.0905 2.6048 3.4843 37 1 0.7469 4.1462 2.8830 38 1 -1.4015 4.6154 1.7380 39 1 -2.0586 3.0742 2.3391 40 1 -2.0135 7.0036 5.8807 41 1 -3.5688 2.5939 6.8223 42 1 -4.6048 2.2511 9.0267 43 1 -4.8057 4.1295 10.6023 44 1 -3.9655 6.3584 9.9875 45 1 -2.9172 6.7204 7.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183894948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:20 Heat of formation + Delta-G solvation = -5.033298 kcal Electronic energy + Delta-G solvation = -26380.166861 eV Core-core repulsion = 22556.688307 eV Total energy + Delta-G solvation = -3823.478553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52834 -39.46925 -39.31565 -35.56839 -35.04152 -33.97982 -32.54423 -32.32986 -31.43619 -31.40321 -28.65733 -27.29019 -25.19019 -23.88787 -22.87561 -22.31037 -21.74941 -21.11166 -20.39571 -19.56509 -18.18174 -17.85223 -16.96236 -16.69622 -16.25547 -16.05937 -15.58534 -15.28329 -15.23609 -14.37158 -14.20222 -13.93965 -13.61812 -13.49895 -13.39609 -13.37473 -13.21145 -12.55128 -12.43454 -12.25049 -12.16383 -11.93864 -11.78940 -11.55742 -11.52187 -11.19030 -10.93411 -10.75216 -10.71699 -10.48048 -10.20068 -9.82445 -9.72210 -9.45918 -9.25453 -8.90179 -8.52939 -8.35123 -8.11773 -6.56785 -4.24713 0.25570 0.90740 1.60271 2.28388 2.46830 3.18480 3.35228 3.38443 3.44899 3.58490 3.65038 4.10870 4.22266 4.40126 4.44501 4.47021 4.62645 4.70825 4.82745 4.92287 4.93481 5.09355 5.18226 5.19893 5.33114 5.45419 5.52432 5.57077 5.59275 5.78727 5.86676 5.96066 6.00273 6.01806 6.04794 6.06644 6.07182 6.21178 6.42671 6.66579 6.72934 6.88216 6.98380 7.31546 7.35239 7.50136 7.62327 8.21320 8.43000 8.67910 8.93748 9.45932 10.83683 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002018 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.800527 B =13872.491005 C =14074.534169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.240 3.760 4 H 0.050 0.950 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.035 3.965 8 N -0.904 5.904 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.700 5.700 14 C 0.505 3.495 15 O -0.550 6.550 16 C -0.140 4.140 17 C -0.008 4.008 18 C 0.210 3.790 19 N -0.479 5.479 20 C -0.015 4.015 21 C -0.018 4.018 22 C -0.009 4.009 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.098 4.098 28 O -0.194 6.194 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.268 0.732 35 H 0.393 0.607 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.186 0.814 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 7.459 21.367 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.067 0.933 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.171 4.171 8 N -0.538 5.538 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.347 5.347 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.181 4.181 17 C -0.046 4.046 18 C 0.004 3.996 19 N -0.207 5.207 20 C -0.156 4.156 21 C -0.071 4.071 22 C -0.010 4.010 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.117 4.117 28 O -0.081 6.081 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.203 0.797 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.336 7.161 18.729 27.856 hybrid contribution 0.097 0.195 2.593 2.602 sum -19.240 7.355 21.322 29.646 Atomic orbital electron populations 1.21897 0.97143 0.98992 1.02161 1.22253 0.94030 0.99923 1.01368 1.19257 0.95910 0.88532 0.82604 0.93270 1.22168 0.89744 1.48133 1.04771 0.92026 1.25712 0.97511 0.93608 1.00254 1.70832 1.04427 1.42471 1.36062 0.83939 0.75336 0.77157 0.75796 1.20724 1.19828 1.21393 1.46240 1.14580 1.55762 1.18136 1.20181 0.82790 0.79228 0.88807 1.90677 1.51063 1.60156 1.41105 1.21664 0.96569 1.01856 0.98044 1.19904 0.96763 1.01076 0.86874 1.26542 0.94416 0.87743 0.90866 1.70422 1.21036 1.14680 1.14583 1.23345 1.00955 0.98972 0.92302 1.21376 1.06589 0.88231 0.90873 1.17634 0.99620 0.94903 0.88848 1.21327 0.97344 0.96251 0.97054 1.21135 0.99195 0.99461 0.93561 1.21325 0.99212 0.92974 0.99711 1.21072 0.98464 0.97597 0.96178 1.21058 0.99249 0.98002 0.93342 1.84451 1.60822 1.39610 1.23206 0.92825 0.94986 0.93143 0.92231 0.92767 0.92149 0.77399 0.88962 0.88391 0.86447 0.87929 0.79739 0.85323 0.85391 0.85606 0.85223 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.52 37.16 0.32 -2.49 16 2 C -0.14 -2.98 5.20 -26.73 -0.14 -3.12 16 3 C 0.24 5.61 1.81 -69.08 -0.13 5.48 16 4 H 0.05 1.27 6.07 -51.93 -0.32 0.95 16 5 C -0.61 -16.32 9.09 -34.44 -0.31 -16.63 16 6 H 0.06 1.72 7.95 -52.48 -0.42 1.31 16 7 C 0.03 0.98 5.42 -17.82 -0.10 0.88 16 8 N -0.90 -26.99 13.70 55.43 0.76 -26.23 16 9 Si 1.05 25.30 25.39 -169.99 -4.32 20.98 16 10 H -0.28 -6.41 6.73 56.52 0.38 -6.02 16 11 H -0.27 -6.35 6.38 56.52 0.36 -5.99 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.70 -13.46 5.03 -54.93 -0.28 -13.74 16 14 C 0.51 8.83 6.42 -10.98 -0.07 8.76 16 15 O -0.55 -11.18 13.12 5.56 0.07 -11.11 16 16 C -0.14 -1.80 5.68 -27.88 -0.16 -1.96 16 17 C -0.01 -0.10 5.13 -27.88 -0.14 -0.24 16 18 C 0.21 2.70 7.58 -12.91 -0.10 2.60 16 19 N -0.48 -6.48 11.27 -10.82 -0.12 -6.60 16 20 C -0.02 -0.17 11.29 -17.42 -0.20 -0.37 16 21 C -0.02 -0.20 7.07 -36.54 -0.26 -0.46 16 22 C -0.01 -0.09 5.87 -104.98 -0.62 -0.71 16 23 C -0.10 -0.88 9.73 -39.18 -0.38 -1.27 16 24 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 25 C -0.11 -0.68 10.04 -39.49 -0.40 -1.08 16 26 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 27 C -0.10 -0.71 9.57 -39.19 -0.38 -1.09 16 28 O -0.19 -2.45 10.59 4.22 0.04 -2.40 16 29 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 32 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.93 8.72 -40.82 -0.36 7.57 16 35 H 0.39 6.77 8.53 -40.82 -0.35 6.42 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.12 1.51 8.10 -51.93 -0.42 1.08 16 39 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.19 1.44 7.30 -52.49 -0.38 1.05 16 41 H 0.13 1.09 7.95 -52.49 -0.42 0.67 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 44 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 45 H 0.13 0.68 7.04 -52.48 -0.37 0.31 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -32.58 372.25 -8.27 -40.85 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.20 Total: 6.59 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.85 Total: -13.96 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.36 Total: -46.57 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.12 Total: -13.51 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -4.32 Total: 20.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.58 -8.27 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.818 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds