Wall clock time and date at job start Tue Mar 31 2020 15:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 N 1.30352 * 125.48299 * 89.69132 * 18 17 16 20 20 C 1.34148 * 108.90507 * 179.89374 * 19 18 17 21 21 C 1.35776 * 107.51070 * 0.36576 * 20 19 18 22 22 C 1.47824 * 126.58087 * 179.79841 * 21 20 19 23 23 C 1.39578 * 120.14235 * 179.70223 * 22 21 20 24 24 C 1.37957 * 119.84921 * 179.72305 * 23 22 21 25 25 C 1.38358 * 120.14796 * 0.53046 * 24 23 22 26 26 C 1.38360 * 120.28866 * 359.76798 * 25 24 23 27 27 C 1.37954 * 120.14557 * 359.95224 * 26 25 24 28 28 O 1.33999 * 125.47825 * 270.00117 * 18 17 16 29 29 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 30 30 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 32 32 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 33 33 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 34 34 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 35 35 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 36 36 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 37 37 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 38 38 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 39 39 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 40 40 H 1.07993 * 126.24636 * 180.14752 * 20 19 18 41 41 H 1.07999 * 120.07050 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.92851 * 180.27628 * 24 23 22 43 43 H 1.08004 * 119.85653 * 179.74476 * 25 24 23 44 44 H 1.08008 * 119.92228 * 179.97438 * 26 25 24 45 45 H 1.08008 * 120.07383 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 7 -1.5544 5.8139 4.1336 20 6 -2.0323 6.0558 5.3634 21 6 -2.5397 4.8905 5.8411 22 6 -3.1686 4.6795 7.1621 23 6 -3.6529 3.4187 7.5144 24 6 -4.2337 3.2271 8.7510 25 6 -4.3465 4.2839 9.6370 26 6 -3.8740 5.5376 9.2915 27 6 -3.2860 5.7413 8.0603 28 8 -2.3595 3.9610 4.8772 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9924 1.1425 -0.6140 35 1 2.2853 2.1184 1.9978 36 1 0.0905 2.6048 3.4843 37 1 0.7469 4.1462 2.8830 38 1 -1.4015 4.6154 1.7380 39 1 -2.0586 3.0742 2.3391 40 1 -2.0135 7.0036 5.8807 41 1 -3.5688 2.5939 6.8223 42 1 -4.6048 2.2511 9.0267 43 1 -4.8057 4.1295 10.6023 44 1 -3.9655 6.3584 9.9875 45 1 -2.9172 6.7204 7.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183894948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:18 Heat of formation + Delta-G solvation = -27.070489 kcal Electronic energy + Delta-G solvation = -26381.122465 eV Core-core repulsion = 22556.688307 eV Total energy + Delta-G solvation = -3824.434157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.42001 -40.84813 -39.96200 -37.24280 -36.00216 -35.01064 -34.45829 -33.38197 -32.81059 -31.94047 -29.71483 -28.90109 -26.30107 -24.58447 -24.22544 -23.50341 -22.54589 -22.17672 -21.73057 -21.18014 -19.79507 -18.87354 -18.10003 -17.70437 -17.25035 -17.12924 -16.82901 -16.52059 -15.92128 -15.70829 -15.13911 -14.96684 -14.83732 -14.74914 -14.46987 -14.37026 -14.22424 -14.07278 -13.92404 -13.70993 -13.48961 -13.32736 -12.72755 -12.48417 -12.46940 -12.44283 -12.30528 -12.17422 -12.05843 -11.70398 -11.64539 -11.47868 -10.98731 -10.89860 -10.69004 -10.65729 -9.96672 -9.78869 -9.08305 -8.78061 -6.46767 -0.42847 0.40229 0.83869 1.41405 1.42555 1.51316 1.61432 1.68570 1.77534 2.39894 2.45742 2.84316 2.99812 3.03081 3.50522 3.72111 3.86574 3.91078 3.99134 4.03286 4.10874 4.24533 4.31578 4.37669 4.39777 4.43595 4.47307 4.57256 4.59020 4.73489 4.82456 4.88386 4.89333 4.95908 5.06555 5.09784 5.19460 5.20266 5.31137 5.44257 5.48190 5.52905 5.55713 5.66237 5.67085 5.94957 6.00084 6.51725 6.60311 6.85486 7.28435 7.45355 8.60955 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002018 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.800527 B =13872.491005 C =14074.534169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.245 3.755 4 H 0.027 0.973 5 C -0.604 4.604 6 H 0.039 0.961 7 C -0.012 4.012 8 N -0.936 5.936 9 Si 1.080 2.920 10 H -0.258 1.258 11 H -0.264 1.264 12 H -0.288 1.288 13 N -0.704 5.704 14 C 0.507 3.493 15 O -0.577 6.577 16 C -0.125 4.125 17 C 0.000 4.000 18 C 0.197 3.803 19 N -0.500 5.500 20 C -0.028 4.028 21 C -0.016 4.016 22 C -0.038 4.038 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.100 4.100 28 O -0.204 6.204 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.257 0.743 35 H 0.403 0.597 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.213 0.787 41 H 0.120 0.880 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.423 7.692 23.687 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.045 0.955 5 C -0.643 4.643 6 H 0.058 0.942 7 C -0.212 4.212 8 N -0.572 5.572 9 Si 0.904 3.096 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.215 1.215 13 N -0.353 5.353 14 C 0.294 3.706 15 O -0.458 6.458 16 C -0.165 4.165 17 C -0.039 4.039 18 C -0.008 4.008 19 N -0.229 5.229 20 C -0.168 4.168 21 C -0.068 4.068 22 C -0.038 4.038 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.118 4.118 28 O -0.091 6.091 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.237 0.763 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.230 0.770 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.607 7.398 21.093 31.089 hybrid contribution 0.737 0.200 2.069 2.205 sum -20.870 7.597 23.162 32.090 Atomic orbital electron populations 1.21786 0.95091 1.00588 1.01761 1.22154 0.95796 0.98264 1.01165 1.18916 0.93341 0.89875 0.83857 0.95501 1.22384 0.91748 1.46418 1.03706 0.94231 1.26874 0.97720 0.93706 1.02891 1.70934 1.05406 1.44840 1.36000 0.83539 0.74410 0.78502 0.73188 1.18289 1.18842 1.21468 1.46098 1.15760 1.56262 1.17149 1.20832 0.81572 0.78247 0.89954 1.90666 1.51651 1.60909 1.42551 1.21556 0.97025 1.02210 0.95723 1.19775 0.96428 1.00954 0.86707 1.26436 0.95439 0.87819 0.91111 1.70393 1.21622 1.15041 1.15826 1.23796 1.01035 1.00165 0.91767 1.21872 1.05793 0.88002 0.91155 1.17823 1.01312 0.96065 0.88643 1.21426 0.98288 0.96023 0.97982 1.21402 0.98853 1.00816 0.92978 1.21733 0.98053 0.92588 1.00454 1.21466 0.97386 0.98553 0.96015 1.21353 0.98871 0.98178 0.93413 1.84435 1.60928 1.40207 1.23529 0.94015 0.92358 0.92759 0.93191 0.92224 0.93397 0.76269 0.86718 0.87379 0.87194 0.87542 0.76989 0.86149 0.83657 0.82925 0.82442 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.52 71.98 0.61 -4.36 16 2 C -0.14 -5.70 5.20 30.59 0.16 -5.54 16 3 C 0.25 11.37 1.81 44.24 0.08 11.45 16 4 H 0.03 1.39 6.07 -2.39 -0.01 1.37 16 5 C -0.60 -32.78 9.09 25.60 0.23 -32.54 16 6 H 0.04 2.27 7.95 -2.91 -0.02 2.25 16 7 C -0.01 -0.71 5.42 84.65 0.46 -0.25 16 8 N -0.94 -57.10 13.70 21.45 0.29 -56.81 16 9 Si 1.08 50.94 25.39 68.60 1.74 52.68 16 10 H -0.26 -11.14 6.73 99.48 0.67 -10.47 16 11 H -0.26 -11.93 6.38 99.48 0.63 -11.30 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 N -0.70 -26.66 5.03 -446.10 -2.24 -28.90 16 14 C 0.51 17.22 6.42 87.66 0.56 17.78 16 15 O -0.58 -23.03 13.12 -3.02 -0.04 -23.07 16 16 C -0.12 -3.03 5.68 29.85 0.17 -2.86 16 17 C 0.00 -0.01 5.13 29.85 0.15 0.15 16 18 C 0.20 4.98 7.58 88.33 0.67 5.65 16 19 N -0.50 -13.21 11.27 -302.87 -3.41 -16.62 16 20 C -0.03 -0.60 11.29 83.77 0.95 0.35 16 21 C -0.02 -0.34 7.07 24.24 0.17 -0.17 16 22 C -0.04 -0.67 5.87 -20.10 -0.12 -0.79 16 23 C -0.12 -1.99 9.73 22.53 0.22 -1.77 16 24 C -0.12 -1.45 10.03 22.23 0.22 -1.22 16 25 C -0.11 -0.98 10.04 22.33 0.22 -0.75 16 26 C -0.12 -1.03 10.03 22.23 0.22 -0.81 16 27 C -0.10 -1.24 9.57 22.52 0.22 -1.02 16 28 O -0.20 -5.09 10.59 -7.82 -0.08 -5.17 16 29 H 0.04 1.62 7.87 -2.38 -0.02 1.61 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.94 5.64 -2.39 -0.01 1.92 16 32 H 0.05 2.19 4.43 -2.39 -0.01 2.18 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.26 15.71 8.72 -92.71 -0.81 14.90 16 35 H 0.40 13.63 8.53 -92.71 -0.79 12.84 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.11 2.80 8.10 -2.38 -0.02 2.78 16 39 H 0.11 2.45 8.10 -2.39 -0.02 2.43 16 40 H 0.21 2.93 7.30 -2.91 -0.02 2.91 16 41 H 0.12 2.08 7.95 -2.91 -0.02 2.05 16 42 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 43 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 44 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 45 H 0.15 1.18 7.04 -2.91 -0.02 1.16 16 Total: -1.00 -71.36 372.25 1.54 -69.82 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.08 Total: 24.79 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.20 Total: -16.73 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.36 Total: -102.33 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.12 Total: -28.23 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.74 Total: 52.68 kcal Total: -71.36 1.54 -69.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183894948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.750 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds