Wall clock time and date at job start Tue Mar 31 2020 15:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47019 * 2 1 4 4 C 1.35676 * 116.99909 * 180.02562 * 3 2 1 5 5 C 1.39117 * 119.86541 * 359.72238 * 4 3 2 6 6 C 1.36604 * 120.13481 * 179.76749 * 5 4 3 7 7 C 1.40241 * 119.86028 * 0.53131 * 6 5 4 8 8 C 1.46446 * 120.13092 * 179.74425 * 7 6 5 9 9 C 1.37781 * 119.99902 * 29.59141 * 8 7 6 10 10 C 1.43200 * 119.99978 * 6.79728 * 9 8 7 11 11 N 6.16703 * 160.34093 * 247.10806 * 2 1 3 12 12 C 1.47129 * 119.99584 * 186.79611 * 9 8 7 13 13 O 1.21644 * 120.00174 * 0.02562 * 12 9 8 14 14 N 1.34781 * 119.99859 * 179.97438 * 12 9 8 15 15 C 1.46492 * 119.99958 * 179.97438 * 14 12 9 16 16 H 1.09002 * 109.47584 * 325.00420 * 15 14 12 17 17 C 1.50701 * 109.47258 * 205.00132 * 15 14 12 18 18 H 1.08003 * 119.99634 * 0.02562 * 17 15 14 19 19 C 1.37871 * 120.00036 * 180.02562 * 17 15 14 20 20 N 1.31516 * 120.00052 * 179.97438 * 19 17 15 21 21 Si 1.86796 * 120.00321 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47390 * 89.99791 * 21 19 17 23 23 H 1.48505 * 109.47252 * 209.99907 * 21 19 17 24 24 H 1.48503 * 109.47137 * 329.99590 * 21 19 17 25 25 C 1.53007 * 109.46985 * 85.00435 * 15 14 12 26 26 C 1.53005 * 109.46807 * 294.99875 * 25 15 14 27 27 C 1.40244 * 119.73327 * 359.72255 * 7 6 5 28 28 C 1.36591 * 119.86268 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.47005 * 299.99913 * 1 2 3 30 30 H 1.08998 * 109.47155 * 60.00112 * 1 2 3 31 31 H 1.09003 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 120.00444 * 2 1 3 33 33 H 1.09007 * 109.46746 * 240.00355 * 2 1 3 34 34 H 1.08001 * 119.93127 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.06824 * 180.25713 * 6 5 4 36 36 H 1.08003 * 119.99675 * 209.58927 * 8 7 6 37 37 H 0.96996 * 119.99631 * 0.02562 * 14 12 9 38 38 H 0.96997 * 120.00204 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.46877 * 54.99704 * 25 15 14 40 40 H 1.08998 * 109.46870 * 174.99894 * 25 15 14 41 41 H 1.08999 * 109.46657 * 179.97438 * 26 25 15 42 42 H 1.09001 * 109.46981 * 299.99947 * 26 25 15 43 43 H 1.08998 * 109.47196 * 59.99821 * 26 25 15 44 44 H 1.08001 * 120.06815 * 180.02562 * 27 7 6 45 45 H 1.08000 * 119.93394 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 4.1963 0.4198 0.0048 6 6 5.5513 0.5924 -0.0005 7 6 6.0903 1.8871 -0.0001 8 6 7.5422 2.0790 -0.0001 9 6 8.3610 1.1408 -0.5897 10 6 7.7899 0.0548 -1.3280 11 7 7.3376 -0.8071 -1.9113 12 6 9.8222 1.2549 -0.4608 13 8 10.3073 2.1772 0.1667 14 7 10.6233 0.3369 -1.0372 15 6 12.0781 0.4508 -0.9093 16 1 12.3619 1.5033 -0.9113 17 6 12.7406 -0.2502 -2.0672 18 1 12.1380 -0.7320 -2.8230 19 6 14.1158 -0.2765 -2.1617 20 7 14.6940 -0.8887 -3.1719 21 14 15.1580 0.5562 -0.8541 22 1 15.4620 -0.4137 0.2285 23 1 16.4263 1.0334 -1.4617 24 1 14.4144 1.7110 -0.2897 25 6 12.5270 -0.1959 0.4027 26 6 11.9540 0.5927 1.5821 27 6 5.2334 2.9973 -0.0001 28 6 3.8801 2.8119 -0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7799 -0.5767 0.0089 35 1 6.2062 -0.2664 -0.0006 36 1 7.9709 2.9559 0.4621 37 1 10.2364 -0.3987 -1.5372 38 1 15.6615 -0.9076 -3.2382 39 1 12.1662 -1.2236 0.4432 40 1 13.6156 -0.1905 0.4566 41 1 12.2734 0.1317 2.5168 42 1 12.3148 1.6205 1.5415 43 1 10.8654 0.5874 1.5281 44 1 5.6426 3.9968 -0.0002 45 1 3.2191 3.6660 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183928550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:43 Heat of formation + Delta-G solvation = -18.950545 kcal Electronic energy + Delta-G solvation = -26675.380557 eV Core-core repulsion = 22851.298507 eV Total energy + Delta-G solvation = -3824.082050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44093 -40.91752 -39.18764 -37.73703 -37.17050 -34.67697 -34.40471 -33.27579 -32.67609 -32.18901 -30.27265 -29.25994 -25.82752 -25.04957 -24.53006 -23.30158 -22.46999 -22.33231 -21.46318 -20.07850 -19.38792 -18.33787 -17.71909 -17.17946 -17.14767 -16.73172 -16.47640 -16.19643 -16.00499 -15.43658 -15.19769 -15.05314 -14.84705 -14.67564 -14.39185 -14.33890 -14.05701 -13.95672 -13.71681 -13.62033 -13.56461 -13.37096 -13.12773 -12.95611 -12.80494 -12.70817 -12.65085 -12.34745 -11.88243 -11.82011 -11.74812 -11.37444 -11.23203 -10.92624 -10.84190 -10.72292 -10.19941 -9.81992 -8.98830 -8.37145 -6.44316 -0.82059 0.31652 0.63780 1.30731 1.38016 1.48673 1.51500 1.65872 2.12464 2.27962 2.35993 2.47207 2.76323 2.85452 2.98584 3.51528 3.61802 3.76305 3.99383 4.03457 4.07135 4.16358 4.27634 4.28794 4.31973 4.37178 4.50779 4.51644 4.71616 4.77140 4.84459 4.89267 4.90490 4.91366 5.06391 5.12995 5.16777 5.22081 5.26522 5.28422 5.39808 5.41481 5.56952 5.60971 5.62373 6.11188 6.28652 6.33799 6.56501 6.78220 7.16499 7.33289 8.78443 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.002332 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.176693 B =12004.139667 C =12476.086462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.321 6.321 4 C 0.150 3.850 5 C -0.222 4.222 6 C -0.060 4.060 7 C -0.158 4.158 8 C 0.110 3.890 9 C -0.157 4.157 10 C 0.269 3.731 11 N -0.449 5.449 12 C 0.566 3.434 13 O -0.558 6.558 14 N -0.702 5.702 15 C 0.250 3.750 16 H 0.038 0.962 17 C -0.539 4.539 18 H 0.045 0.955 19 C 0.025 3.975 20 N -0.937 5.937 21 Si 0.943 3.057 22 H -0.260 1.260 23 H -0.294 1.294 24 H -0.249 1.249 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.024 4.024 28 C -0.163 4.163 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.188 0.812 37 H 0.395 0.605 38 H 0.270 0.730 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.176 0.824 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.172 7.067 11.561 30.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.235 6.235 4 C 0.103 3.897 5 C -0.240 4.240 6 C -0.079 4.079 7 C -0.159 4.159 8 C 0.087 3.913 9 C -0.164 4.164 10 C -0.043 4.043 11 N -0.127 5.127 12 C 0.354 3.646 13 O -0.439 6.439 14 N -0.349 5.349 15 C 0.146 3.854 16 H 0.056 0.944 17 C -0.577 4.577 18 H 0.063 0.937 19 C -0.175 4.175 20 N -0.576 5.576 21 Si 0.770 3.230 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.173 1.173 25 C -0.178 4.178 26 C -0.192 4.192 27 C -0.042 4.042 28 C -0.182 4.182 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.205 0.795 37 H 0.229 0.771 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.193 0.807 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -27.474 6.433 10.992 30.283 hybrid contribution 1.095 -0.721 -0.226 1.330 sum -26.380 5.712 10.767 29.059 Atomic orbital electron populations 1.21806 0.91095 1.04207 1.03485 1.23117 0.97224 0.80631 1.02258 1.86029 1.18645 1.31355 1.87431 1.19607 0.82644 0.94636 0.92821 1.21064 0.93898 0.99222 1.09837 1.21293 0.95344 0.96849 0.94394 1.19045 0.92399 0.94029 1.10377 1.23349 0.90453 0.94000 0.83500 1.18183 0.92281 0.96589 1.09354 1.25603 0.92863 0.92957 0.92913 1.81217 1.09280 1.10988 1.11171 1.17775 0.85584 0.82118 0.79122 1.90778 1.76047 1.33872 1.43205 1.46025 1.07669 1.28179 1.53012 1.18884 0.77192 0.96520 0.92841 0.94419 1.21289 0.92343 1.35751 1.08303 0.93726 1.25665 0.98987 0.95144 0.97667 1.70003 1.11023 1.44234 1.32297 0.85926 0.77805 0.80271 0.79038 1.18605 1.22117 1.17262 1.22221 0.99271 1.00258 0.96027 1.21786 1.01178 0.99472 0.96793 1.21333 0.91600 0.99352 0.91940 1.20498 0.95883 0.95090 1.06705 0.91345 0.91694 0.88453 0.90934 0.91610 0.84288 0.86499 0.79538 0.77119 0.92079 0.92059 0.93545 0.92277 0.93419 0.92447 0.80708 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 71.98 0.74 -0.38 16 2 C 0.04 0.47 5.45 71.98 0.39 0.87 16 3 O -0.32 -5.21 10.12 -89.94 -0.91 -6.12 16 4 C 0.15 2.57 6.70 22.69 0.15 2.72 16 5 C -0.22 -4.11 8.97 22.10 0.20 -3.91 16 6 C -0.06 -1.25 8.26 22.37 0.18 -1.07 16 7 C -0.16 -2.84 5.59 -20.17 -0.11 -2.95 16 8 C 0.11 2.14 9.46 24.30 0.23 2.37 16 9 C -0.16 -4.24 5.84 -19.81 -0.12 -4.36 16 10 C 0.27 7.99 10.47 88.35 0.93 8.91 16 11 N -0.45 -14.66 17.90 18.99 0.34 -14.32 16 12 C 0.57 19.73 6.32 86.58 0.55 20.28 16 13 O -0.56 -20.97 13.43 -4.17 -0.06 -21.03 16 14 N -0.70 -28.30 4.97 -449.64 -2.24 -30.54 16 15 C 0.25 11.74 1.83 44.25 0.08 11.82 16 16 H 0.04 1.90 6.64 -2.39 -0.02 1.89 16 17 C -0.54 -30.12 9.31 25.60 0.24 -29.88 16 18 H 0.04 2.73 7.98 -2.91 -0.02 2.71 16 19 C 0.02 1.42 5.45 84.65 0.46 1.88 16 20 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 21 Si 0.94 44.37 24.41 68.60 1.67 46.04 16 22 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.25 -11.21 6.53 99.48 0.65 -10.56 16 25 C -0.14 -5.92 5.11 30.60 0.16 -5.76 16 26 C -0.14 -4.88 8.51 71.98 0.61 -4.27 16 27 C -0.02 -0.32 9.75 22.37 0.22 -0.10 16 28 C -0.16 -2.28 9.92 22.10 0.22 -2.06 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.70 7.64 -2.39 -0.02 0.68 16 33 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 34 H 0.14 2.21 6.27 -2.91 -0.02 2.20 16 35 H 0.12 2.75 5.34 -2.91 -0.02 2.74 16 36 H 0.19 2.77 7.61 -2.91 -0.02 2.75 16 37 H 0.40 15.69 7.42 -92.71 -0.69 15.00 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.05 2.05 3.21 -2.39 -0.01 2.04 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.79 7.84 -2.39 -0.02 1.77 16 43 H 0.06 2.01 5.64 -2.39 -0.01 1.99 16 44 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -70.38 370.87 4.50 -65.88 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.26 Total: 22.98 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.13 Total: -5.89 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -1.60 Total: -101.86 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.97 Total: -27.15 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.67 Total: 46.04 kcal Total: -70.38 4.50 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.925 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds