Wall clock time and date at job start Tue Mar 31 2020 15:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46726 * 2 1 4 4 C 1.35673 * 116.99965 * 179.97438 * 3 2 1 5 5 C 1.39112 * 119.86707 * 179.97438 * 4 3 2 6 6 C 1.36597 * 120.13962 * 180.02562 * 5 4 3 7 7 C 1.40242 * 119.85992 * 359.97438 * 6 5 4 8 8 C 1.46439 * 120.13334 * 179.97438 * 7 6 5 9 9 C 1.37773 * 120.00187 * 146.89085 * 8 7 6 10 10 C 1.43198 * 119.99937 * 353.27324 * 9 8 7 11 11 N 6.19268 * 159.27947 * 108.25191 * 2 1 3 12 12 C 1.47130 * 120.00376 * 173.26884 * 9 8 7 13 13 O 1.21651 * 119.99575 * 359.97438 * 12 9 8 14 14 N 1.34776 * 120.00296 * 180.02562 * 12 9 8 15 15 C 1.46504 * 119.99787 * 180.02562 * 14 12 9 16 16 H 1.08998 * 109.47640 * 34.99345 * 15 14 12 17 17 C 1.50701 * 109.46895 * 155.00021 * 15 14 12 18 18 H 1.07996 * 120.00215 * 5.58498 * 17 15 14 19 19 C 1.37878 * 119.99842 * 185.59622 * 17 15 14 20 20 N 1.31507 * 120.00459 * 196.98573 * 19 17 15 21 21 Si 1.86805 * 120.00095 * 16.98973 * 19 17 15 22 22 H 1.48493 * 109.47329 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47173 * 300.00370 * 21 19 17 24 24 H 1.48507 * 109.47203 * 59.99785 * 21 19 17 25 25 C 1.53008 * 109.46603 * 274.99044 * 15 14 12 26 26 C 1.52995 * 109.46963 * 65.99922 * 25 15 14 27 27 C 1.40243 * 119.73516 * 0.24682 * 7 6 5 28 28 C 1.36608 * 119.85899 * 359.49547 * 27 7 6 29 29 H 1.08995 * 109.47633 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.47227 * 60.00881 * 1 2 3 31 31 H 1.09011 * 109.46934 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47353 * 239.99572 * 2 1 3 33 33 H 1.08999 * 109.46726 * 119.99284 * 2 1 3 34 34 H 1.08004 * 119.93108 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.06868 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.99949 * 326.89251 * 8 7 6 37 37 H 0.97000 * 120.00252 * 359.97438 * 14 12 9 38 38 H 0.97007 * 119.99588 * 354.95227 * 20 19 17 39 39 H 1.08997 * 109.46802 * 185.99599 * 25 15 14 40 40 H 1.08998 * 109.47050 * 305.99740 * 25 15 14 41 41 H 1.09002 * 109.47367 * 300.00165 * 26 25 15 42 42 H 1.09003 * 109.47137 * 59.99613 * 26 25 15 43 43 H 1.08999 * 109.47151 * 179.97438 * 26 25 15 44 44 H 1.07991 * 120.07101 * 179.74843 * 27 7 6 45 45 H 1.07995 * 119.92973 * 180.25479 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5252 0.0005 5 6 3.8799 2.8120 0.0000 6 6 5.2333 2.9975 0.0000 7 6 6.0902 1.8873 0.0011 8 6 7.5420 2.0792 0.0006 9 6 8.3561 1.1795 0.6531 10 6 7.7791 0.1399 1.4512 11 7 7.3221 -0.6862 2.0808 12 6 9.8183 1.2866 0.5300 13 8 10.3084 2.1695 -0.1484 14 7 10.6146 0.4062 1.1680 15 6 12.0706 0.5133 1.0458 16 1 12.3540 1.5641 0.9860 17 6 12.7234 -0.1154 2.2498 18 1 12.1209 -0.6303 2.9835 19 6 14.0898 -0.0330 2.4149 20 7 14.7006 -0.8402 3.2544 21 14 15.0735 1.2253 1.4461 22 1 16.5104 1.1113 1.8026 23 1 14.9021 0.9749 -0.0076 24 1 14.5896 2.5906 1.7735 25 6 12.5308 -0.2119 -0.2205 26 6 11.9882 0.5171 -1.4514 27 6 5.5513 0.5926 -0.0031 28 6 4.1961 0.4199 0.0023 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.2190 3.6661 -0.0004 35 1 5.6424 3.9969 -0.0008 36 1 7.9745 2.9262 -0.5114 37 1 10.2238 -0.2980 1.7086 38 1 14.1831 -1.4429 3.8111 39 1 13.6201 -0.2244 -0.2565 40 1 12.1558 -1.2353 -0.2097 41 1 10.8988 0.5297 -1.4154 42 1 12.3631 1.5405 -1.4621 43 1 12.3163 0.0008 -2.3535 44 1 6.2061 -0.2661 -0.0064 45 1 3.7799 -0.5766 0.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183928566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:49 Heat of formation + Delta-G solvation = -9.261223 kcal Electronic energy + Delta-G solvation = -26660.936728 eV Core-core repulsion = 22837.274838 eV Total energy + Delta-G solvation = -3823.661890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67834 -39.57190 -38.30686 -36.65730 -35.43918 -33.70255 -32.50018 -32.18597 -31.55207 -31.44000 -29.28220 -27.24717 -24.79143 -24.39309 -22.57945 -22.19463 -21.48274 -21.25418 -19.71066 -18.89184 -18.51909 -17.24520 -16.59644 -16.53967 -15.87212 -15.48402 -15.26338 -14.94630 -14.58122 -14.23427 -14.08512 -13.90204 -13.71232 -13.47334 -13.28697 -13.11938 -12.93110 -12.65508 -12.56526 -12.48186 -12.45355 -12.27040 -12.12758 -11.97349 -11.74769 -11.30483 -11.12366 -10.91483 -10.71539 -10.44768 -9.92892 -9.83257 -9.64246 -9.49719 -9.41968 -9.07955 -8.34230 -8.28481 -8.08632 -6.59297 -4.22850 0.11819 1.01696 1.44062 2.64540 2.71107 2.92093 3.35019 3.38244 3.44073 3.58038 3.72612 3.83264 3.92563 4.30635 4.41158 4.42286 4.42644 4.54647 4.57793 4.73911 4.82575 4.94676 5.07547 5.15495 5.24954 5.28707 5.37365 5.52779 5.57038 5.64872 5.69707 5.89416 6.01112 6.06298 6.08703 6.18483 6.25651 6.29451 6.66693 6.77920 6.90354 6.94646 7.01676 7.28988 7.35024 7.44164 7.60504 8.22249 8.36120 8.63625 8.85300 9.46542 10.81575 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.002340 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.895063 B =11964.494516 C =12422.600165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.313 6.313 4 C 0.149 3.851 5 C -0.157 4.157 6 C -0.043 4.043 7 C -0.134 4.134 8 C 0.053 3.947 9 C -0.119 4.119 10 C 0.252 3.748 11 N -0.415 5.415 12 C 0.556 3.444 13 O -0.540 6.540 14 N -0.691 5.691 15 C 0.247 3.753 16 H 0.046 0.954 17 C -0.619 4.619 18 H 0.061 0.939 19 C 0.039 3.961 20 N -0.896 5.896 21 Si 1.041 2.959 22 H -0.284 1.284 23 H -0.268 1.268 24 H -0.279 1.279 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.049 4.049 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.392 0.608 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.031 0.969 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 5.077 -9.490 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.226 6.226 4 C 0.103 3.897 5 C -0.175 4.175 6 C -0.061 4.061 7 C -0.135 4.135 8 C 0.029 3.971 9 C -0.125 4.125 10 C -0.062 4.062 11 N -0.092 5.092 12 C 0.341 3.659 13 O -0.420 6.420 14 N -0.337 5.337 15 C 0.144 3.856 16 H 0.064 0.936 17 C -0.657 4.657 18 H 0.079 0.921 19 C -0.168 4.168 20 N -0.529 5.529 21 Si 0.868 3.132 22 H -0.209 1.209 23 H -0.194 1.194 24 H -0.205 1.205 25 C -0.178 4.178 26 C -0.202 4.202 27 C -0.068 4.068 28 C -0.228 4.228 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.226 0.774 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.213 5.037 -9.251 26.405 hybrid contribution -1.542 -1.067 0.514 1.944 sum -25.755 3.970 -8.737 27.485 Atomic orbital electron populations 1.21783 0.92467 1.03059 1.03605 1.22869 0.96095 0.81629 1.01790 1.86023 1.19002 1.29781 1.87808 1.19327 0.82317 0.94182 0.93896 1.20150 0.95335 0.94821 1.07242 1.20971 0.91973 0.98568 0.94571 1.18986 0.92706 0.93573 1.08220 1.23010 0.90361 0.94754 0.88946 1.18739 0.94398 0.95874 1.03534 1.25582 0.93564 0.93403 0.93671 1.81202 1.08286 1.09913 1.09769 1.17533 0.84432 0.83056 0.80891 1.90796 1.74996 1.35078 1.41117 1.46250 1.09045 1.30590 1.47823 1.19139 0.74810 0.97140 0.94512 0.93602 1.22078 0.94887 1.40507 1.08219 0.92127 1.25707 0.95116 0.97646 0.98304 1.70874 1.38499 1.19630 1.23915 0.84106 0.76261 0.76197 0.76619 1.20932 1.19431 1.20496 1.22360 1.01321 0.99252 0.94899 1.21899 1.00893 1.00275 0.97129 1.21170 0.94883 0.96552 0.94182 1.20943 0.94139 0.98373 1.09389 0.91423 0.91421 0.90200 0.91720 0.91724 0.84555 0.84066 0.81820 0.77446 0.92089 0.91148 0.93076 0.93216 0.92848 0.94983 0.85380 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.05 0.33 5.45 37.16 0.20 0.53 16 3 O -0.31 -2.85 10.12 -18.72 -0.19 -3.04 16 4 C 0.15 1.45 6.70 -38.93 -0.26 1.19 16 5 C -0.16 -1.37 9.92 -39.85 -0.40 -1.76 16 6 C -0.04 -0.36 9.75 -39.42 -0.38 -0.75 16 7 C -0.13 -1.40 5.52 -105.09 -0.58 -1.98 16 8 C 0.05 0.60 9.44 -36.45 -0.34 0.25 16 9 C -0.12 -1.69 5.83 -104.53 -0.61 -2.30 16 10 C 0.25 3.79 10.56 -22.51 -0.24 3.55 16 11 N -0.42 -6.74 18.11 41.79 0.76 -5.98 16 12 C 0.56 10.05 6.36 -12.65 -0.08 9.97 16 13 O -0.54 -10.65 13.44 5.23 0.07 -10.58 16 14 N -0.69 -14.05 4.98 -56.09 -0.28 -14.32 16 15 C 0.25 5.81 1.81 -69.08 -0.13 5.68 16 16 H 0.05 1.15 6.24 -51.93 -0.32 0.82 16 17 C -0.62 -16.76 9.01 -34.44 -0.31 -17.07 16 18 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 19 C 0.04 1.09 5.30 -17.82 -0.09 1.00 16 20 N -0.90 -26.72 13.69 55.43 0.76 -25.96 16 21 Si 1.04 24.70 26.28 -169.99 -4.47 20.23 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -5.89 5.72 56.52 0.32 -5.57 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.14 -3.06 5.27 -26.73 -0.14 -3.20 16 26 C -0.14 -2.80 8.53 37.16 0.32 -2.48 16 27 C -0.05 -0.55 8.24 -39.42 -0.32 -0.87 16 28 C -0.21 -2.09 8.97 -39.84 -0.36 -2.44 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.16 1.58 7.61 -52.48 -0.40 1.18 16 37 H 0.39 7.72 7.40 -40.82 -0.30 7.42 16 38 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 39 H 0.07 1.61 4.82 -51.93 -0.25 1.36 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.94 5.62 -51.93 -0.29 0.64 16 42 H 0.05 1.06 7.90 -51.93 -0.41 0.65 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.13 1.51 5.82 -52.49 -0.31 1.20 16 45 H 0.13 1.09 6.27 -52.49 -0.33 0.76 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -31.60 374.01 -7.07 -38.67 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.01 Total: 6.36 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.34 Total: -11.01 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 1.24 Total: -46.26 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.12 Total: -13.62 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.47 Total: 20.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.60 -7.07 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.413 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds