Wall clock time and date at job start Tue Mar 31 2020 15:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46726 * 2 1 4 4 C 1.35673 * 116.99965 * 179.97438 * 3 2 1 5 5 C 1.39112 * 119.86707 * 179.97438 * 4 3 2 6 6 C 1.36597 * 120.13962 * 180.02562 * 5 4 3 7 7 C 1.40242 * 119.85992 * 359.97438 * 6 5 4 8 8 C 1.46439 * 120.13334 * 179.97438 * 7 6 5 9 9 C 1.37773 * 120.00187 * 146.89085 * 8 7 6 10 10 C 1.43198 * 119.99937 * 353.27324 * 9 8 7 11 11 N 6.19268 * 159.27947 * 108.25191 * 2 1 3 12 12 C 1.47130 * 120.00376 * 173.26884 * 9 8 7 13 13 O 1.21651 * 119.99575 * 359.97438 * 12 9 8 14 14 N 1.34776 * 120.00296 * 180.02562 * 12 9 8 15 15 C 1.46504 * 119.99787 * 180.02562 * 14 12 9 16 16 H 1.08998 * 109.47640 * 34.99345 * 15 14 12 17 17 C 1.50701 * 109.46895 * 155.00021 * 15 14 12 18 18 H 1.07996 * 120.00215 * 5.58498 * 17 15 14 19 19 C 1.37878 * 119.99842 * 185.59622 * 17 15 14 20 20 N 1.31507 * 120.00459 * 196.98573 * 19 17 15 21 21 Si 1.86805 * 120.00095 * 16.98973 * 19 17 15 22 22 H 1.48493 * 109.47329 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47173 * 300.00370 * 21 19 17 24 24 H 1.48507 * 109.47203 * 59.99785 * 21 19 17 25 25 C 1.53008 * 109.46603 * 274.99044 * 15 14 12 26 26 C 1.52995 * 109.46963 * 65.99922 * 25 15 14 27 27 C 1.40243 * 119.73516 * 0.24682 * 7 6 5 28 28 C 1.36608 * 119.85899 * 359.49547 * 27 7 6 29 29 H 1.08995 * 109.47633 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.47227 * 60.00881 * 1 2 3 31 31 H 1.09011 * 109.46934 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47353 * 239.99572 * 2 1 3 33 33 H 1.08999 * 109.46726 * 119.99284 * 2 1 3 34 34 H 1.08004 * 119.93108 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.06868 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.99949 * 326.89251 * 8 7 6 37 37 H 0.97000 * 120.00252 * 359.97438 * 14 12 9 38 38 H 0.97007 * 119.99588 * 354.95227 * 20 19 17 39 39 H 1.08997 * 109.46802 * 185.99599 * 25 15 14 40 40 H 1.08998 * 109.47050 * 305.99740 * 25 15 14 41 41 H 1.09002 * 109.47367 * 300.00165 * 26 25 15 42 42 H 1.09003 * 109.47137 * 59.99613 * 26 25 15 43 43 H 1.08999 * 109.47151 * 179.97438 * 26 25 15 44 44 H 1.07991 * 120.07101 * 179.74843 * 27 7 6 45 45 H 1.07995 * 119.92973 * 180.25479 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5252 0.0005 5 6 3.8799 2.8120 0.0000 6 6 5.2333 2.9975 0.0000 7 6 6.0902 1.8873 0.0011 8 6 7.5420 2.0792 0.0006 9 6 8.3561 1.1795 0.6531 10 6 7.7791 0.1399 1.4512 11 7 7.3221 -0.6862 2.0808 12 6 9.8183 1.2866 0.5300 13 8 10.3084 2.1695 -0.1484 14 7 10.6146 0.4062 1.1680 15 6 12.0706 0.5133 1.0458 16 1 12.3540 1.5641 0.9860 17 6 12.7234 -0.1154 2.2498 18 1 12.1209 -0.6303 2.9835 19 6 14.0898 -0.0330 2.4149 20 7 14.7006 -0.8402 3.2544 21 14 15.0735 1.2253 1.4461 22 1 16.5104 1.1113 1.8026 23 1 14.9021 0.9749 -0.0076 24 1 14.5896 2.5906 1.7735 25 6 12.5308 -0.2119 -0.2205 26 6 11.9882 0.5171 -1.4514 27 6 5.5513 0.5926 -0.0031 28 6 4.1961 0.4199 0.0023 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.2190 3.6661 -0.0004 35 1 5.6424 3.9969 -0.0008 36 1 7.9745 2.9262 -0.5114 37 1 10.2238 -0.2980 1.7086 38 1 14.1831 -1.4429 3.8111 39 1 13.6201 -0.2244 -0.2565 40 1 12.1558 -1.2353 -0.2097 41 1 10.8988 0.5297 -1.4154 42 1 12.3631 1.5405 -1.4621 43 1 12.3163 0.0008 -2.3535 44 1 6.2061 -0.2661 -0.0064 45 1 3.7799 -0.5766 0.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183928566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:48 Heat of formation + Delta-G solvation = -28.720707 kcal Electronic energy + Delta-G solvation = -26661.780555 eV Core-core repulsion = 22837.274838 eV Total energy + Delta-G solvation = -3824.505716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44364 -40.91844 -39.17431 -37.75640 -37.13127 -34.70463 -34.46944 -33.22056 -32.68144 -32.20391 -30.25660 -29.00379 -25.76146 -25.05489 -24.26706 -23.24247 -22.47537 -22.32266 -21.37526 -20.33290 -19.46995 -18.88987 -17.54015 -17.16504 -17.06592 -16.79957 -16.45770 -16.06824 -15.73932 -15.40172 -15.14377 -14.93164 -14.72140 -14.50784 -14.48907 -14.39982 -14.27341 -14.07902 -13.91301 -13.63358 -13.54647 -13.40029 -13.12554 -12.83892 -12.67772 -12.61887 -12.44601 -12.24793 -11.89260 -11.78159 -11.74820 -11.39851 -11.14057 -10.92711 -10.73321 -10.47332 -10.21543 -9.85843 -9.02485 -8.81254 -6.45893 -0.82122 0.29873 0.59026 1.48122 1.48662 1.54340 1.63343 1.73070 2.11300 2.35762 2.44528 2.45497 2.73594 2.82561 3.01142 3.49452 3.60416 3.74997 3.98147 4.02373 4.05251 4.14878 4.27302 4.30696 4.36233 4.45153 4.50094 4.58025 4.69970 4.75341 4.83659 4.89064 4.89368 4.91012 5.11538 5.16079 5.20767 5.23847 5.25377 5.34988 5.39178 5.57018 5.58901 5.60794 5.69693 5.97782 6.27431 6.30361 6.49451 6.73097 7.22837 7.34907 8.57532 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.002340 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.895063 B =11964.494516 C =12422.600165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.321 6.321 4 C 0.149 3.851 5 C -0.163 4.163 6 C -0.026 4.026 7 C -0.158 4.158 8 C 0.111 3.889 9 C -0.157 4.157 10 C 0.269 3.731 11 N -0.451 5.451 12 C 0.564 3.436 13 O -0.556 6.556 14 N -0.704 5.704 15 C 0.252 3.748 16 H 0.037 0.963 17 C -0.618 4.618 18 H 0.028 0.972 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 1.075 2.925 22 H -0.285 1.285 23 H -0.238 1.238 24 H -0.267 1.267 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.058 4.058 28 C -0.221 4.221 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.188 0.812 37 H 0.392 0.608 38 H 0.254 0.746 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.115 0.885 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.368 7.302 -11.779 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.235 6.235 4 C 0.102 3.898 5 C -0.181 4.181 6 C -0.044 4.044 7 C -0.159 4.159 8 C 0.087 3.913 9 C -0.164 4.164 10 C -0.044 4.044 11 N -0.128 5.128 12 C 0.352 3.648 13 O -0.438 6.438 14 N -0.351 5.351 15 C 0.148 3.852 16 H 0.055 0.945 17 C -0.656 4.656 18 H 0.046 0.954 19 C -0.208 4.208 20 N -0.562 5.562 21 Si 0.896 3.104 22 H -0.211 1.211 23 H -0.162 1.162 24 H -0.192 1.192 25 C -0.176 4.176 26 C -0.192 4.192 27 C -0.077 4.077 28 C -0.240 4.240 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.192 0.808 36 H 0.205 0.795 37 H 0.225 0.775 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.133 0.867 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.303 7.256 -11.551 29.630 hybrid contribution -1.214 -1.730 1.213 2.437 sum -27.517 5.525 -10.338 29.909 Atomic orbital electron populations 1.21808 0.91086 1.04213 1.03489 1.23115 0.97233 0.80632 1.02242 1.86029 1.18634 1.31351 1.87457 1.19594 0.82653 0.94622 0.92929 1.20496 0.95863 0.95107 1.06640 1.21317 0.91600 0.99326 0.92113 1.19048 0.92384 0.94081 1.10341 1.23353 0.90514 0.92951 0.84439 1.18228 0.92316 0.98386 1.07429 1.25652 0.92924 0.92927 0.92930 1.81200 1.09283 1.10972 1.11322 1.17805 0.85620 0.81764 0.79620 1.90773 1.75802 1.35439 1.41745 1.46123 1.08038 1.31724 1.49188 1.18846 0.76700 0.96157 0.93517 0.94496 1.22277 0.94923 1.39527 1.08850 0.95376 1.27029 0.96764 0.98430 0.98623 1.70993 1.38595 1.21111 1.25537 0.83701 0.74869 0.74522 0.77323 1.21091 1.16231 1.19203 1.22254 1.00744 0.99202 0.95411 1.21790 1.00926 0.99876 0.96604 1.21191 0.95272 0.96650 0.94546 1.21063 0.93887 0.99236 1.09804 0.91710 0.91324 0.88446 0.90912 0.91651 0.82428 0.80751 0.79487 0.77503 0.93656 0.92070 0.93492 0.92965 0.93131 0.92524 0.86675 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 71.98 0.74 -0.38 16 2 C 0.04 0.48 5.45 71.98 0.39 0.87 16 3 O -0.32 -5.24 10.12 -89.91 -0.91 -6.15 16 4 C 0.15 2.57 6.70 22.69 0.15 2.72 16 5 C -0.16 -2.30 9.92 22.10 0.22 -2.08 16 6 C -0.03 -0.34 9.75 22.37 0.22 -0.12 16 7 C -0.16 -2.87 5.52 -20.17 -0.11 -2.98 16 8 C 0.11 2.18 9.44 24.30 0.23 2.41 16 9 C -0.16 -4.29 5.83 -19.81 -0.12 -4.41 16 10 C 0.27 8.10 10.56 88.35 0.93 9.04 16 11 N -0.45 -14.95 18.11 18.99 0.34 -14.61 16 12 C 0.56 19.90 6.36 86.58 0.55 20.45 16 13 O -0.56 -20.94 13.44 -4.19 -0.06 -21.00 16 14 N -0.70 -28.87 4.98 -449.62 -2.24 -31.11 16 15 C 0.25 11.87 1.81 44.25 0.08 11.95 16 16 H 0.04 1.82 6.24 -2.39 -0.01 1.81 16 17 C -0.62 -34.45 9.01 25.60 0.23 -34.22 16 18 H 0.03 1.70 7.96 -2.91 -0.02 1.68 16 19 C -0.01 -0.48 5.30 84.66 0.45 -0.03 16 20 N -0.93 -57.11 13.69 21.45 0.29 -56.82 16 21 Si 1.07 49.46 26.28 68.60 1.80 51.27 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.24 -9.76 5.72 99.48 0.57 -9.19 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 C -0.14 -5.90 5.27 30.60 0.16 -5.74 16 26 C -0.13 -4.90 8.53 71.98 0.61 -4.28 16 27 C -0.06 -1.21 8.24 22.38 0.18 -1.03 16 28 C -0.22 -4.11 8.97 22.10 0.20 -3.91 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 33 H 0.07 0.73 7.64 -2.39 -0.02 0.71 16 34 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.19 2.81 7.61 -2.91 -0.02 2.79 16 37 H 0.39 15.98 7.40 -92.71 -0.69 15.29 16 38 H 0.25 15.88 8.73 -92.70 -0.81 15.07 16 39 H 0.06 2.72 4.82 -2.39 -0.01 2.70 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.86 5.62 -2.39 -0.01 1.85 16 42 H 0.05 1.86 7.90 -2.39 -0.02 1.84 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.12 2.70 5.82 -2.92 -0.02 2.68 16 45 H 0.14 2.21 6.27 -2.91 -0.02 2.20 16 Total: -1.00 -70.25 374.01 4.53 -65.72 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.17 Total: 24.45 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.13 Total: -11.75 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -1.60 Total: -102.54 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.97 Total: -27.14 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.80 Total: 51.27 kcal Total: -70.25 4.53 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.001 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds