Wall clock time and date at job start Tue Mar 31 2020 15:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47173 * 2 1 4 4 H 1.09004 * 109.47574 * 54.68671 * 3 2 1 5 5 C 1.50698 * 109.47563 * 174.69155 * 3 2 1 6 6 H 1.07998 * 120.00483 * 114.41320 * 5 3 2 7 7 C 1.37882 * 119.99873 * 294.42364 * 5 3 2 8 8 N 1.31513 * 119.99745 * 356.09168 * 7 5 3 9 9 Si 1.86801 * 120.00191 * 176.10095 * 7 5 3 10 10 H 1.48506 * 109.46774 * 265.01843 * 9 7 5 11 11 H 1.48501 * 109.47107 * 145.02067 * 9 7 5 12 12 H 1.48500 * 109.47115 * 25.01641 * 9 7 5 13 13 N 1.46508 * 109.47091 * 294.68859 * 3 2 1 14 14 C 1.34779 * 119.99759 * 85.00232 * 13 3 2 15 15 O 1.21278 * 119.99967 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99882 * 180.02562 * 14 13 3 17 17 H 1.08992 * 108.70334 * 298.25151 * 16 14 13 18 18 C 1.54563 * 108.75403 * 56.35614 * 16 14 13 19 19 S 1.84214 * 101.32673 * 97.87322 * 18 16 14 20 20 C 1.84077 * 93.90938 * 32.25598 * 19 18 16 21 21 N 1.45494 * 108.75284 * 179.97438 * 16 14 13 22 22 C 1.34775 * 122.43314 * 57.97882 * 21 16 14 23 23 O 1.21284 * 119.99718 * 5.52814 * 22 21 16 24 24 C 1.50697 * 120.00383 * 185.53510 * 22 21 16 25 25 C 1.52996 * 109.47281 * 185.97712 * 24 22 21 26 26 C 1.52999 * 109.47132 * 305.98098 * 24 22 21 27 27 C 1.53003 * 109.47075 * 65.97838 * 24 22 21 28 28 H 1.08994 * 109.47495 * 60.00261 * 1 2 3 29 29 H 1.08999 * 109.47576 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47106 * 300.00070 * 1 2 3 31 31 H 1.09005 * 109.47106 * 239.99930 * 2 1 3 32 32 H 1.09006 * 109.47145 * 120.00036 * 2 1 3 33 33 H 0.97005 * 119.99856 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00201 * 264.99830 * 13 3 2 35 35 H 1.08997 * 111.05075 * 215.88595 * 18 16 14 36 36 H 1.08996 * 111.05234 * 339.86183 * 18 16 14 37 37 H 1.09006 * 110.77377 * 208.27661 * 20 19 18 38 38 H 1.08996 * 110.93754 * 84.92871 * 20 19 18 39 39 H 1.09005 * 109.47276 * 60.00134 * 25 24 22 40 40 H 1.09004 * 109.47188 * 179.97438 * 25 24 22 41 41 H 1.08994 * 109.47344 * 299.99919 * 25 24 22 42 42 H 1.09002 * 109.47261 * 59.99866 * 26 24 22 43 43 H 1.08998 * 109.47324 * 180.02562 * 26 24 22 44 44 H 1.09005 * 109.46944 * 300.00049 * 26 24 22 45 45 H 1.09000 * 109.47491 * 66.90571 * 27 24 22 46 46 H 1.09007 * 109.46987 * 186.90189 * 27 24 22 47 47 H 1.08999 * 109.47390 * 306.90017 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8386 5 6 3.5412 1.4446 0.1314 6 1 4.1540 1.8055 -0.6813 7 6 4.1325 0.9856 1.2894 8 7 3.3860 0.6181 2.3079 9 14 5.9938 0.8860 1.4117 10 1 6.4402 -0.4861 1.0599 11 1 6.4164 1.2035 2.7994 12 1 6.6045 1.8611 0.4728 13 7 1.6588 2.0952 -1.2550 14 6 0.4421 2.6619 -1.3774 15 8 -0.3373 2.6311 -0.4487 16 6 0.0498 3.3329 -2.6685 17 1 0.7306 4.1641 -2.8513 18 6 0.1938 2.3139 -3.8217 19 16 -1.5433 1.7293 -4.0070 20 6 -2.2730 3.3475 -3.5200 21 7 -1.3013 3.8554 -2.5324 22 6 -1.6410 4.7400 -1.5741 23 8 -0.7878 5.2056 -0.8486 24 6 -3.0809 5.1507 -1.4038 25 6 -3.1735 6.2642 -0.3587 26 6 -3.6279 5.6580 -2.7395 27 6 -3.9032 3.9465 -0.9402 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8020 0.2955 3.1227 34 1 2.2821 2.1195 -1.9979 35 1 0.5425 2.8004 -4.7327 36 1 0.8548 1.4944 -3.5399 37 1 -3.2524 3.2079 -3.0624 38 1 -2.3402 4.0180 -4.3767 39 1 -2.5877 7.1221 -0.6889 40 1 -4.2150 6.5615 -0.2359 41 1 -2.7839 5.9028 0.5929 42 1 -3.5620 4.8646 -3.4841 43 1 -4.6693 5.9554 -2.6163 44 1 -3.0421 6.5158 -3.0698 45 1 -3.5946 3.6612 0.0655 46 1 -4.9611 4.2094 -0.9348 47 1 -3.7399 3.1112 -1.6211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183944439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:38 Heat of formation + Delta-G solvation = -55.733807 kcal Electronic energy + Delta-G solvation = -28206.812648 eV Core-core repulsion = 24516.579507 eV Total energy + Delta-G solvation = -3690.233141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77769 -38.84495 -36.17995 -35.81884 -34.79358 -32.58478 -31.56159 -30.37793 -27.94761 -27.47605 -27.09089 -26.75293 -24.68097 -23.15054 -22.02687 -20.26120 -19.34580 -19.10026 -17.51929 -17.38460 -16.53054 -16.10538 -15.45554 -15.11358 -14.95896 -14.90503 -14.51262 -14.37344 -14.04963 -13.78471 -13.41429 -13.15294 -12.94950 -12.65207 -12.48704 -12.46794 -12.25880 -12.19519 -11.89327 -11.77226 -11.72901 -11.39626 -11.28716 -11.05677 -10.98293 -10.87287 -10.76238 -10.47407 -10.31119 -10.17294 -9.65149 -9.50020 -9.38614 -9.02881 -8.52911 -8.46701 -7.98975 -7.78798 -6.10718 -4.18118 1.43747 1.82743 2.58017 2.84083 3.25727 3.31182 3.33501 3.35444 3.95880 4.18932 4.38514 4.41052 4.60048 4.69164 4.76879 4.84319 4.92033 5.06699 5.22288 5.23325 5.32959 5.36868 5.44156 5.49388 5.55987 5.66963 5.77609 5.81490 5.89850 6.12726 6.18818 6.27654 6.40148 6.46524 6.66530 7.04877 7.20879 7.22568 7.37523 7.47123 7.63218 7.73974 7.89662 8.12809 8.25896 8.67771 8.82180 9.15358 9.48480 10.96847 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003962 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.445906 B = 7065.736395 C = 7704.210502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.273 3.727 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.518 6.518 16 C 0.109 3.891 17 H 0.106 0.894 18 C -0.066 4.066 19 S -0.266 6.266 20 C 0.144 3.856 21 N -0.599 5.599 22 C 0.547 3.453 23 O -0.506 6.506 24 C -0.081 4.081 25 C -0.126 4.126 26 C -0.159 4.159 27 C -0.144 4.144 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.264 0.736 34 H 0.385 0.615 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 7.003 -14.715 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.172 3.828 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.357 5.357 14 C 0.283 3.717 15 O -0.394 6.394 16 C -0.001 4.001 17 H 0.124 0.876 18 C -0.214 4.214 19 S -0.040 6.040 20 C -0.089 4.089 21 N -0.336 5.336 22 C 0.334 3.666 23 O -0.378 6.378 24 C -0.084 4.084 25 C -0.184 4.184 26 C -0.217 4.217 27 C -0.201 4.201 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.175 6.095 -13.701 20.634 hybrid contribution 1.883 0.808 -0.010 2.049 sum -12.292 6.903 -13.711 19.665 Atomic orbital electron populations 1.21831 0.98012 0.98043 1.01546 1.21847 0.92928 0.99796 1.01251 1.18765 0.94275 0.88871 0.80917 0.92850 1.21206 0.90658 1.43849 1.01601 0.92165 1.24887 0.98429 0.95028 0.95232 1.69963 1.35112 1.42749 1.03948 0.86484 0.85112 0.78293 0.77513 1.20609 1.21107 1.19843 1.46420 1.14152 1.56534 1.18644 1.20124 0.83386 0.79623 0.88593 1.90668 1.50891 1.58053 1.39743 1.21250 0.85898 0.97607 0.95314 0.87608 1.24598 0.96041 1.00863 0.99947 1.88427 1.05708 1.19832 1.89985 1.24893 0.96571 0.92962 0.94465 1.48063 1.07881 1.45254 1.32444 1.20280 0.90815 0.77308 0.78217 1.90746 1.51446 1.53337 1.42267 1.20743 0.91716 0.98024 0.97903 1.21657 1.01362 0.96846 0.98518 1.22313 1.01833 1.01947 0.95594 1.21971 0.99142 0.95983 1.02998 0.93692 0.95981 0.93287 0.94980 0.89847 0.92624 0.78338 0.87291 0.85391 0.85699 0.88401 0.92171 0.92058 0.91395 0.91137 0.91184 0.91995 0.91123 0.91476 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.12 -2.88 5.49 -26.74 -0.15 -3.03 16 3 C 0.27 6.92 2.11 -69.08 -0.15 6.77 16 4 H 0.05 1.62 7.56 -51.93 -0.39 1.23 16 5 C -0.53 -14.22 8.67 -34.44 -0.30 -14.52 16 6 H 0.06 1.53 7.72 -52.49 -0.41 1.12 16 7 C 0.07 1.85 5.25 -17.82 -0.09 1.75 16 8 N -0.88 -25.24 11.90 55.43 0.66 -24.58 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.54 4.60 -54.93 -0.25 -14.79 16 14 C 0.50 9.94 5.16 -10.98 -0.06 9.88 16 15 O -0.52 -12.22 11.70 -13.37 -0.16 -12.37 16 16 C 0.11 1.60 2.88 -68.80 -0.20 1.40 16 17 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 18 C -0.07 -0.74 6.94 37.98 0.26 -0.48 16 19 S -0.27 -3.20 23.43 -107.50 -2.52 -5.72 16 20 C 0.14 1.48 5.26 60.43 0.32 1.79 16 21 N -0.60 -8.32 2.80 -169.19 -0.47 -8.79 16 22 C 0.55 8.62 5.34 -10.99 -0.06 8.57 16 23 O -0.51 -10.39 14.78 -13.38 -0.20 -10.59 16 24 C -0.08 -0.93 0.75 -155.66 -0.12 -1.05 16 25 C -0.13 -1.47 7.78 37.16 0.29 -1.18 16 26 C -0.16 -1.26 8.09 37.16 0.30 -0.96 16 27 C -0.14 -1.59 8.23 37.16 0.31 -1.28 16 28 H 0.04 0.99 5.64 -51.93 -0.29 0.69 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.20 7.87 -51.93 -0.41 0.79 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 2.24 6.58 -51.93 -0.34 1.90 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.38 6.71 7.93 -40.82 -0.32 6.39 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.13 1.52 7.01 -51.93 -0.36 1.15 16 37 H 0.13 1.16 3.93 -51.93 -0.20 0.96 16 38 H 0.10 0.73 7.22 -51.93 -0.38 0.35 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 42 H 0.07 0.47 3.83 -51.93 -0.20 0.27 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.06 0.71 5.22 -51.93 -0.27 0.44 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -33.91 368.84 -9.08 -43.00 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.36 Total: 7.56 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 0.68 Total: 4.89 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.07 Total: -48.16 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.35 Total: -22.96 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.52 Total: -5.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.91 -9.08 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183944439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.739 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds