Wall clock time and date at job start Tue Mar 31 2020 15:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47173 * 2 1 4 4 H 1.09004 * 109.47574 * 54.68671 * 3 2 1 5 5 C 1.50698 * 109.47563 * 174.69155 * 3 2 1 6 6 H 1.07998 * 120.00483 * 114.41320 * 5 3 2 7 7 C 1.37882 * 119.99873 * 294.42364 * 5 3 2 8 8 N 1.31513 * 119.99745 * 356.09168 * 7 5 3 9 9 Si 1.86801 * 120.00191 * 176.10095 * 7 5 3 10 10 H 1.48506 * 109.46774 * 265.01843 * 9 7 5 11 11 H 1.48501 * 109.47107 * 145.02067 * 9 7 5 12 12 H 1.48500 * 109.47115 * 25.01641 * 9 7 5 13 13 N 1.46508 * 109.47091 * 294.68859 * 3 2 1 14 14 C 1.34779 * 119.99759 * 85.00232 * 13 3 2 15 15 O 1.21278 * 119.99967 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99882 * 180.02562 * 14 13 3 17 17 H 1.08992 * 108.70334 * 298.25151 * 16 14 13 18 18 C 1.54563 * 108.75403 * 56.35614 * 16 14 13 19 19 S 1.84214 * 101.32673 * 97.87322 * 18 16 14 20 20 C 1.84077 * 93.90938 * 32.25598 * 19 18 16 21 21 N 1.45494 * 108.75284 * 179.97438 * 16 14 13 22 22 C 1.34775 * 122.43314 * 57.97882 * 21 16 14 23 23 O 1.21284 * 119.99718 * 5.52814 * 22 21 16 24 24 C 1.50697 * 120.00383 * 185.53510 * 22 21 16 25 25 C 1.52996 * 109.47281 * 185.97712 * 24 22 21 26 26 C 1.52999 * 109.47132 * 305.98098 * 24 22 21 27 27 C 1.53003 * 109.47075 * 65.97838 * 24 22 21 28 28 H 1.08994 * 109.47495 * 60.00261 * 1 2 3 29 29 H 1.08999 * 109.47576 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47106 * 300.00070 * 1 2 3 31 31 H 1.09005 * 109.47106 * 239.99930 * 2 1 3 32 32 H 1.09006 * 109.47145 * 120.00036 * 2 1 3 33 33 H 0.97005 * 119.99856 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00201 * 264.99830 * 13 3 2 35 35 H 1.08997 * 111.05075 * 215.88595 * 18 16 14 36 36 H 1.08996 * 111.05234 * 339.86183 * 18 16 14 37 37 H 1.09006 * 110.77377 * 208.27661 * 20 19 18 38 38 H 1.08996 * 110.93754 * 84.92871 * 20 19 18 39 39 H 1.09005 * 109.47276 * 60.00134 * 25 24 22 40 40 H 1.09004 * 109.47188 * 179.97438 * 25 24 22 41 41 H 1.08994 * 109.47344 * 299.99919 * 25 24 22 42 42 H 1.09002 * 109.47261 * 59.99866 * 26 24 22 43 43 H 1.08998 * 109.47324 * 180.02562 * 26 24 22 44 44 H 1.09005 * 109.46944 * 300.00049 * 26 24 22 45 45 H 1.09000 * 109.47491 * 66.90571 * 27 24 22 46 46 H 1.09007 * 109.46987 * 186.90189 * 27 24 22 47 47 H 1.08999 * 109.47390 * 306.90017 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8386 5 6 3.5412 1.4446 0.1314 6 1 4.1540 1.8055 -0.6813 7 6 4.1325 0.9856 1.2894 8 7 3.3860 0.6181 2.3079 9 14 5.9938 0.8860 1.4117 10 1 6.4402 -0.4861 1.0599 11 1 6.4164 1.2035 2.7994 12 1 6.6045 1.8611 0.4728 13 7 1.6588 2.0952 -1.2550 14 6 0.4421 2.6619 -1.3774 15 8 -0.3373 2.6311 -0.4487 16 6 0.0498 3.3329 -2.6685 17 1 0.7306 4.1641 -2.8513 18 6 0.1938 2.3139 -3.8217 19 16 -1.5433 1.7293 -4.0070 20 6 -2.2730 3.3475 -3.5200 21 7 -1.3013 3.8554 -2.5324 22 6 -1.6410 4.7400 -1.5741 23 8 -0.7878 5.2056 -0.8486 24 6 -3.0809 5.1507 -1.4038 25 6 -3.1735 6.2642 -0.3587 26 6 -3.6279 5.6580 -2.7395 27 6 -3.9032 3.9465 -0.9402 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8020 0.2955 3.1227 34 1 2.2821 2.1195 -1.9979 35 1 0.5425 2.8004 -4.7327 36 1 0.8548 1.4944 -3.5399 37 1 -3.2524 3.2079 -3.0624 38 1 -2.3402 4.0180 -4.3767 39 1 -2.5877 7.1221 -0.6889 40 1 -4.2150 6.5615 -0.2359 41 1 -2.7839 5.9028 0.5929 42 1 -3.5620 4.8646 -3.4841 43 1 -4.6693 5.9554 -2.6163 44 1 -3.0421 6.5158 -3.0698 45 1 -3.5946 3.6612 0.0655 46 1 -4.9611 4.2094 -0.9348 47 1 -3.7399 3.1112 -1.6211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183944439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:37 Heat of formation + Delta-G solvation = -78.417027 kcal Electronic energy + Delta-G solvation = -28207.796266 eV Core-core repulsion = 24516.579507 eV Total energy + Delta-G solvation = -3691.216759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99316 -40.36383 -37.51141 -36.99690 -36.48141 -34.40985 -33.25062 -31.83928 -28.92280 -28.83805 -28.31532 -27.78885 -25.85299 -25.02461 -23.38783 -21.81001 -21.04738 -20.31971 -19.07087 -18.48560 -17.84989 -17.55960 -17.16748 -16.51946 -16.27627 -16.10007 -15.98555 -15.54042 -15.22173 -14.84290 -14.75009 -14.57456 -14.36366 -14.18791 -13.69815 -13.57124 -13.41330 -13.25918 -13.18441 -13.07417 -12.98477 -12.91621 -12.84103 -12.65128 -12.62360 -12.20496 -12.10912 -11.94859 -11.76463 -11.62653 -11.41728 -11.08451 -10.89135 -10.65213 -10.57665 -9.83417 -9.62307 -8.89432 -8.19684 -6.35370 0.55328 0.93394 1.41481 1.42777 1.45146 1.53814 1.71646 1.84092 2.34446 2.57936 3.10928 3.13487 3.39928 3.74020 3.76128 3.88598 3.96989 4.04665 4.17845 4.22865 4.33177 4.41579 4.44993 4.52987 4.64753 4.67002 4.71848 4.77361 4.88233 4.89629 4.97875 5.03011 5.05913 5.18669 5.22160 5.31942 5.34181 5.41155 5.52737 5.59460 5.73904 5.91481 6.07976 6.11287 6.74410 6.94377 7.10896 7.32217 7.58647 8.88353 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003962 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.445906 B = 7065.736395 C = 7704.210502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C 0.284 3.716 4 H -0.010 1.010 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.706 5.706 14 C 0.493 3.507 15 O -0.561 6.561 16 C 0.114 3.886 17 H 0.116 0.884 18 C -0.053 4.053 19 S -0.293 6.293 20 C 0.147 3.853 21 N -0.600 5.600 22 C 0.536 3.464 23 O -0.568 6.568 24 C -0.079 4.079 25 C -0.124 4.124 26 C -0.152 4.152 27 C -0.140 4.140 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.016 0.984 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.103 0.897 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 7.381 -18.358 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.181 3.819 4 H 0.008 0.992 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.356 5.356 14 C 0.277 3.723 15 O -0.440 6.440 16 C 0.005 3.995 17 H 0.133 0.867 18 C -0.202 4.202 19 S -0.067 6.067 20 C -0.084 4.084 21 N -0.335 5.335 22 C 0.325 3.675 23 O -0.445 6.445 24 C -0.082 4.082 25 C -0.182 4.182 26 C -0.209 4.209 27 C -0.197 4.197 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.122 0.878 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.942 6.459 -17.428 23.848 hybrid contribution 2.058 0.716 1.172 2.474 sum -12.884 7.176 -16.256 21.949 Atomic orbital electron populations 1.21630 0.96821 0.98980 1.00205 1.21666 0.93830 0.98877 1.00465 1.18270 0.93626 0.88932 0.81110 0.99191 1.21590 0.91390 1.43520 1.02077 0.90864 1.25814 1.03370 0.94587 0.94827 1.70130 1.37238 1.43774 1.04555 0.85369 0.79066 0.78832 0.77300 1.19531 1.21517 1.18584 1.46160 1.15200 1.56636 1.17610 1.21099 0.82341 0.78674 0.90147 1.90656 1.52045 1.59382 1.41875 1.21250 0.86864 0.98179 0.93234 0.86680 1.24668 0.95611 0.99881 1.00009 1.88574 1.06579 1.21688 1.89827 1.25308 0.95827 0.92431 0.94819 1.48181 1.08297 1.44363 1.32699 1.21206 0.92134 0.76739 0.77376 1.90711 1.53466 1.55787 1.44546 1.20851 0.89108 0.98055 1.00214 1.21656 1.03066 0.96656 0.96829 1.22304 1.03131 1.02345 0.93101 1.21963 1.01109 0.95867 1.00719 0.93119 0.93687 0.96471 0.93206 0.92873 0.92730 0.76322 0.82881 0.85893 0.84557 0.84209 0.92758 0.88666 0.95140 0.89532 0.88442 0.91875 0.94882 0.87794 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.52 71.98 0.61 -4.92 16 2 C -0.11 -5.45 5.49 30.59 0.17 -5.29 16 3 C 0.28 15.02 2.11 44.24 0.09 15.11 16 4 H -0.01 -0.64 7.56 -2.39 -0.02 -0.66 16 5 C -0.55 -29.66 8.67 25.60 0.22 -29.43 16 6 H 0.07 3.68 7.72 -2.91 -0.02 3.66 16 7 C 0.01 0.78 5.25 84.66 0.44 1.22 16 8 N -0.92 -54.86 11.90 21.45 0.26 -54.61 16 9 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 N -0.71 -29.54 4.60 -446.09 -2.05 -31.59 16 14 C 0.49 20.02 5.16 87.66 0.45 20.48 16 15 O -0.56 -27.97 11.70 15.08 0.18 -27.80 16 16 C 0.11 3.23 2.88 44.97 0.13 3.36 16 17 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 18 C -0.05 -1.05 6.94 72.51 0.50 -0.55 16 19 S -0.29 -6.26 23.43 -56.49 -1.32 -7.58 16 20 C 0.15 2.53 5.26 127.56 0.67 3.20 16 21 N -0.60 -15.85 2.80 -807.60 -2.26 -18.11 16 22 C 0.54 17.01 5.34 87.66 0.47 17.48 16 23 O -0.57 -24.63 14.78 15.06 0.22 -24.40 16 24 C -0.08 -1.74 0.75 -52.93 -0.04 -1.78 16 25 C -0.12 -2.90 7.78 71.98 0.56 -2.34 16 26 C -0.15 -1.81 8.09 71.98 0.58 -1.23 16 27 C -0.14 -2.93 8.23 71.98 0.59 -2.34 16 28 H 0.05 2.27 5.64 -2.39 -0.01 2.25 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.02 0.86 7.87 -2.38 -0.02 0.84 16 31 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.05 2.98 6.58 -2.38 -0.02 2.96 16 33 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 34 H 0.40 13.82 7.93 -92.71 -0.74 13.09 16 35 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 2.62 7.01 -2.39 -0.02 2.60 16 37 H 0.14 2.05 3.93 -2.38 -0.01 2.05 16 38 H 0.14 1.34 7.22 -2.39 -0.02 1.32 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.03 0.91 8.03 -2.39 -0.02 0.89 16 42 H 0.09 0.74 3.83 -2.39 -0.01 0.73 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.06 1.33 5.22 -2.39 -0.01 1.32 16 Total: -1.00 -81.54 368.84 2.75 -78.79 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.25 Total: 27.17 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.46 Total: 12.97 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -4.06 Total: -104.30 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: 0.40 Total: -52.20 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.32 Total: -7.58 kcal Total: -81.54 2.75 -78.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183944439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.375 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds