Wall clock time and date at job start Tue Mar 31 2020 15:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46720 * 2 1 4 4 H 1.08994 * 109.47275 * 304.99827 * 3 2 1 5 5 C 1.50705 * 109.46796 * 184.99629 * 3 2 1 6 6 H 1.07993 * 120.00460 * 240.00326 * 5 3 2 7 7 C 1.37888 * 119.99567 * 60.00423 * 5 3 2 8 8 N 1.31513 * 119.99854 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47168 * 89.99595 * 9 7 5 11 11 H 1.48493 * 109.47088 * 209.99950 * 9 7 5 12 12 H 1.48502 * 109.46947 * 330.00199 * 9 7 5 13 13 N 1.46498 * 109.47206 * 65.00524 * 3 2 1 14 14 C 1.34780 * 119.99623 * 274.99153 * 13 3 2 15 15 O 1.21279 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.50702 * 120.00142 * 180.02562 * 14 13 3 17 17 H 1.09008 * 109.42052 * 327.45977 * 16 14 13 18 18 C 1.55395 * 109.47063 * 87.42995 * 16 14 13 19 19 S 1.84251 * 99.76108 * 160.39106 * 18 16 14 20 20 C 1.83560 * 94.86045 * 326.85307 * 19 18 16 21 21 N 1.46132 * 109.46912 * 207.49564 * 16 14 13 22 22 C 1.34778 * 122.50350 * 29.49592 * 21 16 14 23 23 O 1.21291 * 119.99500 * 359.31260 * 22 21 16 24 24 C 1.50695 * 120.00371 * 179.31829 * 22 21 16 25 25 C 1.53003 * 109.47349 * 189.85351 * 24 22 21 26 26 C 1.53002 * 109.46861 * 309.85296 * 24 22 21 27 27 C 1.53004 * 109.47248 * 69.85021 * 24 22 21 28 28 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46739 * 299.99697 * 1 2 3 30 30 H 1.09003 * 109.47057 * 59.99759 * 1 2 3 31 31 H 1.08996 * 109.46734 * 239.99801 * 2 1 3 32 32 H 1.09000 * 109.46707 * 119.99857 * 2 1 3 33 33 H 0.96996 * 119.99534 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00920 * 94.99975 * 13 3 2 35 35 H 1.08994 * 111.34375 * 42.75566 * 18 16 14 36 36 H 1.09001 * 111.34809 * 278.02345 * 18 16 14 37 37 H 1.08998 * 110.34288 * 259.63427 * 20 19 18 38 38 H 1.09001 * 110.42834 * 137.43231 * 20 19 18 39 39 H 1.09002 * 109.46883 * 59.99242 * 25 24 22 40 40 H 1.08995 * 109.47183 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.46888 * 300.00058 * 25 24 22 42 42 H 1.08989 * 109.47198 * 78.72436 * 26 24 22 43 43 H 1.09002 * 109.46448 * 198.72592 * 26 24 22 44 44 H 1.09001 * 109.46905 * 318.72071 * 26 24 22 45 45 H 1.08997 * 109.46955 * 50.99259 * 27 24 22 46 46 H 1.08999 * 109.46834 * 170.99249 * 27 24 22 47 47 H 1.08995 * 109.46660 * 290.99568 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5549 -0.3502 -0.7601 11 1 6.3830 0.9224 -2.8172 12 1 6.5569 2.0738 -0.6901 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3395 2.6320 0.4344 16 6 0.0366 3.3387 2.6545 17 1 0.5073 2.8254 3.4932 18 6 0.5010 4.8214 2.6280 19 16 -0.5980 5.5162 3.9335 20 6 -2.0047 4.3961 3.5650 21 7 -1.4161 3.2843 2.8034 22 6 -2.1603 2.2868 2.2862 23 8 -1.6279 1.3955 1.6590 24 6 -3.6538 2.2789 2.4869 25 6 -4.2235 0.9364 2.0240 26 6 -3.9701 2.4830 3.9699 27 6 -4.2841 3.4091 1.6707 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 -2.9494 34 1 2.2719 2.1232 1.9978 35 1 0.3058 5.2809 1.6591 36 1 1.5516 4.9132 2.9035 37 1 -2.7531 4.9127 2.9640 38 1 -2.4503 4.0281 4.4892 39 1 -3.7744 0.1312 2.6054 40 1 -5.3038 0.9309 2.1687 41 1 -3.9981 0.7910 0.9675 42 1 -3.8732 3.5394 4.2199 43 1 -4.9892 2.1536 4.1726 44 1 -3.2734 1.9012 4.5734 45 1 -3.9290 3.3558 0.6415 46 1 -5.3692 3.3071 1.6864 47 1 -4.0031 4.3695 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183944453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:44 Heat of formation + Delta-G solvation = -44.736833 kcal Electronic energy + Delta-G solvation = -28406.666106 eV Core-core repulsion = 24716.909830 eV Total energy + Delta-G solvation = -3689.756276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81765 -38.65565 -36.25495 -35.75292 -34.71773 -32.42138 -31.42124 -30.31157 -27.88099 -27.52694 -27.10045 -26.78451 -24.67743 -22.96310 -22.08953 -20.30024 -19.32408 -18.90258 -17.49265 -17.23565 -16.51941 -16.18405 -15.37047 -15.27433 -14.97768 -14.83958 -14.52255 -14.26478 -14.18062 -13.88192 -13.34808 -13.00189 -12.84892 -12.61661 -12.52127 -12.43024 -12.25865 -12.16877 -11.90673 -11.66961 -11.48738 -11.33080 -11.14045 -11.05307 -10.99191 -10.92630 -10.74450 -10.59442 -10.24766 -9.99680 -9.52193 -9.21220 -8.99347 -8.92996 -8.59761 -8.39312 -8.03946 -7.69538 -6.07041 -4.16947 1.39770 1.77305 2.60284 2.82359 3.26145 3.32910 3.34641 3.40612 3.98948 4.26275 4.39162 4.47950 4.57455 4.72002 4.73159 4.85847 4.89887 5.07401 5.23524 5.25019 5.33472 5.39363 5.44879 5.54103 5.58591 5.67615 5.72753 5.80085 5.86151 6.08408 6.10449 6.28791 6.65109 6.78672 6.98336 7.23029 7.29369 7.40101 7.53493 7.61010 7.71060 7.84455 7.98062 8.26284 8.71181 8.78395 8.83845 9.20257 9.50228 10.97738 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.004089 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.781938 B = 6846.626222 C = 8150.007580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.125 4.125 3 C 0.277 3.723 4 H 0.046 0.954 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.510 3.490 15 O -0.514 6.514 16 C 0.111 3.889 17 H 0.098 0.902 18 C -0.059 4.059 19 S -0.276 6.276 20 C 0.146 3.854 21 N -0.608 5.608 22 C 0.526 3.474 23 O -0.469 6.469 24 C -0.079 4.079 25 C -0.126 4.126 26 C -0.155 4.155 27 C -0.143 4.143 28 H 0.009 0.991 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.385 0.615 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 7.790 14.047 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.176 3.824 4 H 0.064 0.936 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.291 3.709 15 O -0.390 6.390 16 C 0.002 3.998 17 H 0.115 0.885 18 C -0.208 4.208 19 S -0.050 6.050 20 C -0.088 4.088 21 N -0.347 5.347 22 C 0.313 3.687 23 O -0.340 6.340 24 C -0.083 4.083 25 C -0.183 4.183 26 C -0.212 4.212 27 C -0.200 4.200 28 H 0.028 0.972 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.217 0.783 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.791 8.027 13.605 20.970 hybrid contribution 1.249 -0.795 -0.526 1.571 sum -12.542 7.232 13.079 19.510 Atomic orbital electron populations 1.22255 0.97185 0.97898 1.03905 1.21899 0.93604 0.99325 1.01529 1.18733 0.93804 0.89341 0.80567 0.93605 1.21249 0.90832 1.39041 1.06189 0.92189 1.24884 0.98442 0.94880 0.95446 1.69919 1.35013 1.37512 1.09342 0.86486 0.85082 0.78402 0.77334 1.20587 1.21125 1.19893 1.46377 1.14138 1.56203 1.18664 1.19630 0.83186 0.80158 0.87952 1.90705 1.50261 1.58145 1.39870 1.21834 0.82186 0.95832 0.99951 0.88468 1.24679 1.02052 0.94012 1.00037 1.88145 1.16370 1.51690 1.48754 1.24594 0.96018 0.88360 0.99819 1.48013 1.05385 1.24800 1.56470 1.20615 0.88639 0.81457 0.77945 1.90673 1.72005 1.35316 1.36009 1.20736 0.91441 0.98892 0.97190 1.21666 0.99513 0.94240 1.02921 1.22267 1.02635 1.02395 0.93940 1.21955 1.00866 0.96526 1.00691 0.97172 0.88903 0.94349 0.89001 0.95599 0.92653 0.78301 0.87489 0.85278 0.88258 0.87016 0.92118 0.92195 0.91297 0.91242 0.91307 0.92022 0.91479 0.91400 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 8.35 37.16 0.31 -3.55 16 2 C -0.12 -3.23 5.45 -26.73 -0.15 -3.37 16 3 C 0.28 7.11 2.24 -69.08 -0.15 6.95 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.22 8.73 -34.43 -0.30 -14.52 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.60 5.02 -54.93 -0.28 -14.87 16 14 C 0.51 9.94 4.61 -10.98 -0.05 9.89 16 15 O -0.51 -11.95 11.46 -19.39 -0.22 -12.17 16 16 C 0.11 1.59 3.26 -68.01 -0.22 1.37 16 17 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 18 C -0.06 -0.70 7.04 38.43 0.27 -0.43 16 19 S -0.28 -2.97 23.32 -107.50 -2.51 -5.47 16 20 C 0.15 1.43 5.48 60.15 0.33 1.76 16 21 N -0.61 -8.09 3.12 -168.90 -0.53 -8.62 16 22 C 0.53 7.94 5.69 -10.99 -0.06 7.88 16 23 O -0.47 -9.21 9.29 -19.40 -0.18 -9.39 16 24 C -0.08 -0.87 0.75 -155.66 -0.12 -0.99 16 25 C -0.13 -1.43 7.73 37.16 0.29 -1.14 16 26 C -0.16 -1.22 7.37 37.16 0.27 -0.95 16 27 C -0.14 -1.39 8.29 37.16 0.31 -1.08 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 2.24 2.45 -53.38 -0.13 2.11 16 30 H 0.04 1.01 7.85 -51.93 -0.41 0.61 16 31 H 0.09 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 35 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 36 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.10 0.88 5.38 -51.93 -0.28 0.60 16 38 H 0.11 0.87 5.49 -51.93 -0.28 0.59 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 42 H 0.07 0.44 4.80 -51.93 -0.25 0.19 16 43 H 0.07 0.44 8.00 -51.93 -0.42 0.03 16 44 H 0.06 0.53 7.99 -51.93 -0.42 0.11 16 45 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 46 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 47 H 0.06 0.51 5.12 -51.93 -0.27 0.24 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -32.71 361.00 -9.29 -42.00 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.26 Total: 8.38 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 0.63 Total: 3.53 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.18 Total: -48.09 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.40 Total: -21.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.51 Total: -5.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.71 -9.29 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183944453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.733 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds