Wall clock time and date at job start Tue Mar 31 2020 15:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46720 * 2 1 4 4 H 1.08994 * 109.47275 * 304.99827 * 3 2 1 5 5 C 1.50705 * 109.46796 * 184.99629 * 3 2 1 6 6 H 1.07993 * 120.00460 * 240.00326 * 5 3 2 7 7 C 1.37888 * 119.99567 * 60.00423 * 5 3 2 8 8 N 1.31513 * 119.99854 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47168 * 89.99595 * 9 7 5 11 11 H 1.48493 * 109.47088 * 209.99950 * 9 7 5 12 12 H 1.48502 * 109.46947 * 330.00199 * 9 7 5 13 13 N 1.46498 * 109.47206 * 65.00524 * 3 2 1 14 14 C 1.34780 * 119.99623 * 274.99153 * 13 3 2 15 15 O 1.21279 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.50702 * 120.00142 * 180.02562 * 14 13 3 17 17 H 1.09008 * 109.42052 * 327.45977 * 16 14 13 18 18 C 1.55395 * 109.47063 * 87.42995 * 16 14 13 19 19 S 1.84251 * 99.76108 * 160.39106 * 18 16 14 20 20 C 1.83560 * 94.86045 * 326.85307 * 19 18 16 21 21 N 1.46132 * 109.46912 * 207.49564 * 16 14 13 22 22 C 1.34778 * 122.50350 * 29.49592 * 21 16 14 23 23 O 1.21291 * 119.99500 * 359.31260 * 22 21 16 24 24 C 1.50695 * 120.00371 * 179.31829 * 22 21 16 25 25 C 1.53003 * 109.47349 * 189.85351 * 24 22 21 26 26 C 1.53002 * 109.46861 * 309.85296 * 24 22 21 27 27 C 1.53004 * 109.47248 * 69.85021 * 24 22 21 28 28 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46739 * 299.99697 * 1 2 3 30 30 H 1.09003 * 109.47057 * 59.99759 * 1 2 3 31 31 H 1.08996 * 109.46734 * 239.99801 * 2 1 3 32 32 H 1.09000 * 109.46707 * 119.99857 * 2 1 3 33 33 H 0.96996 * 119.99534 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00920 * 94.99975 * 13 3 2 35 35 H 1.08994 * 111.34375 * 42.75566 * 18 16 14 36 36 H 1.09001 * 111.34809 * 278.02345 * 18 16 14 37 37 H 1.08998 * 110.34288 * 259.63427 * 20 19 18 38 38 H 1.09001 * 110.42834 * 137.43231 * 20 19 18 39 39 H 1.09002 * 109.46883 * 59.99242 * 25 24 22 40 40 H 1.08995 * 109.47183 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.46888 * 300.00058 * 25 24 22 42 42 H 1.08989 * 109.47198 * 78.72436 * 26 24 22 43 43 H 1.09002 * 109.46448 * 198.72592 * 26 24 22 44 44 H 1.09001 * 109.46905 * 318.72071 * 26 24 22 45 45 H 1.08997 * 109.46955 * 50.99259 * 27 24 22 46 46 H 1.08999 * 109.46834 * 170.99249 * 27 24 22 47 47 H 1.08995 * 109.46660 * 290.99568 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5549 -0.3502 -0.7601 11 1 6.3830 0.9224 -2.8172 12 1 6.5569 2.0738 -0.6901 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3395 2.6320 0.4344 16 6 0.0366 3.3387 2.6545 17 1 0.5073 2.8254 3.4932 18 6 0.5010 4.8214 2.6280 19 16 -0.5980 5.5162 3.9335 20 6 -2.0047 4.3961 3.5650 21 7 -1.4161 3.2843 2.8034 22 6 -2.1603 2.2868 2.2862 23 8 -1.6279 1.3955 1.6590 24 6 -3.6538 2.2789 2.4869 25 6 -4.2235 0.9364 2.0240 26 6 -3.9701 2.4830 3.9699 27 6 -4.2841 3.4091 1.6707 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 -2.9494 34 1 2.2719 2.1232 1.9978 35 1 0.3058 5.2809 1.6591 36 1 1.5516 4.9132 2.9035 37 1 -2.7531 4.9127 2.9640 38 1 -2.4503 4.0281 4.4892 39 1 -3.7744 0.1312 2.6054 40 1 -5.3038 0.9309 2.1687 41 1 -3.9981 0.7910 0.9675 42 1 -3.8732 3.5394 4.2199 43 1 -4.9892 2.1536 4.1726 44 1 -3.2734 1.9012 4.5734 45 1 -3.9290 3.3558 0.6415 46 1 -5.3692 3.3071 1.6864 47 1 -4.0031 4.3695 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183944453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:43 Heat of formation + Delta-G solvation = -66.258231 kcal Electronic energy + Delta-G solvation = -28407.599344 eV Core-core repulsion = 24716.909830 eV Total energy + Delta-G solvation = -3690.689514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01816 -40.13539 -37.53416 -36.96879 -36.35498 -34.31402 -33.03725 -31.84806 -28.97242 -28.73357 -28.30132 -27.79218 -25.94711 -24.79562 -23.46477 -21.67152 -21.18560 -20.22402 -18.90603 -18.33142 -17.93055 -17.57844 -17.09151 -16.45855 -16.35256 -16.03285 -15.74807 -15.57757 -15.35773 -15.09751 -14.59220 -14.40018 -14.31960 -13.98343 -13.68336 -13.48699 -13.44164 -13.16246 -13.13988 -13.08966 -13.01061 -12.89499 -12.74143 -12.61448 -12.41667 -12.13501 -11.97561 -11.93534 -11.88698 -11.57872 -11.34688 -11.02930 -10.63670 -10.51328 -10.36080 -9.87209 -9.52817 -8.88315 -8.15499 -6.34014 0.52569 0.84989 1.43387 1.44447 1.51878 1.55280 1.70040 2.00040 2.35524 2.61953 3.12913 3.21351 3.45599 3.74431 3.77809 3.92736 3.96343 4.04254 4.14439 4.26216 4.31325 4.50875 4.52096 4.63876 4.68751 4.71951 4.80567 4.84949 4.91653 4.93450 4.98931 5.01001 5.18074 5.22170 5.34075 5.36675 5.37573 5.53037 5.63576 5.65251 5.85501 5.94033 6.16089 6.18568 6.75394 7.01259 7.33791 7.46391 7.65987 8.89767 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.004089 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.781938 B = 6846.626222 C = 8150.007580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.290 3.710 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.972 3.028 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.555 6.555 16 C 0.118 3.882 17 H 0.118 0.882 18 C -0.060 4.060 19 S -0.253 6.253 20 C 0.141 3.859 21 N -0.609 5.609 22 C 0.516 3.484 23 O -0.526 6.526 24 C -0.076 4.076 25 C -0.124 4.124 26 C -0.149 4.149 27 C -0.139 4.139 28 H 0.016 0.984 29 H 0.108 0.892 30 H 0.005 0.995 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.143 0.857 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.095 0.905 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 9.508 17.446 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.186 3.814 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.184 1.184 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.433 6.433 16 C 0.009 3.991 17 H 0.135 0.865 18 C -0.209 4.209 19 S -0.026 6.026 20 C -0.091 4.091 21 N -0.346 5.346 22 C 0.306 3.694 23 O -0.402 6.402 24 C -0.079 4.079 25 C -0.181 4.181 26 C -0.206 4.206 27 C -0.196 4.196 28 H 0.035 0.965 29 H 0.126 0.874 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.236 0.764 35 H 0.110 0.890 36 H 0.168 0.832 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.114 0.886 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.243 9.801 17.076 24.300 hybrid contribution 1.287 -1.289 -1.587 2.416 sum -12.957 8.511 15.489 21.914 Atomic orbital electron populations 1.22152 0.96483 0.98022 1.03207 1.21757 0.94055 0.99525 1.00215 1.18198 0.93433 0.88601 0.81148 0.99011 1.21611 0.91309 1.38876 1.06671 0.90649 1.25837 1.03501 0.94360 0.95018 1.70096 1.37167 1.38429 1.09962 0.85342 0.78872 0.78974 0.77121 1.19831 1.21371 1.18413 1.46102 1.15372 1.56463 1.17576 1.20476 0.81917 0.79167 0.89422 1.90692 1.51188 1.59378 1.42046 1.21797 0.83406 0.96982 0.96924 0.86481 1.24623 1.03810 0.92143 1.00366 1.88126 1.15769 1.51501 1.47234 1.24946 0.96006 0.87229 1.00947 1.48124 1.04917 1.25311 1.56291 1.21461 0.90451 0.80744 0.76777 1.90558 1.73349 1.37651 1.38595 1.20803 0.88273 0.98920 0.99913 1.21661 1.01515 0.94498 1.00459 1.22252 1.03825 1.03792 0.90717 1.21950 1.02375 0.96842 0.98440 0.96459 0.87399 0.97528 0.91958 0.94969 0.92763 0.76436 0.89023 0.83228 0.86818 0.83997 0.93235 0.88942 0.94787 0.89119 0.89034 0.92530 0.94992 0.88647 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 8.35 71.98 0.60 -6.89 16 2 C -0.12 -6.34 5.45 30.60 0.17 -6.17 16 3 C 0.29 15.57 2.24 44.25 0.10 15.67 16 4 H -0.01 -0.51 7.58 -2.39 -0.02 -0.53 16 5 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 6 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 7 C 0.01 0.70 5.29 84.66 0.45 1.14 16 8 N -0.92 -54.77 11.29 21.45 0.24 -54.53 16 9 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 N -0.70 -29.88 5.02 -446.10 -2.24 -32.12 16 14 C 0.51 20.27 4.61 87.66 0.40 20.68 16 15 O -0.56 -27.29 11.46 20.83 0.24 -27.06 16 16 C 0.12 3.26 3.26 45.14 0.15 3.41 16 17 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 18 C -0.06 -1.34 7.04 72.81 0.51 -0.82 16 19 S -0.25 -4.59 23.32 -56.49 -1.32 -5.91 16 20 C 0.14 2.27 5.48 127.66 0.70 2.97 16 21 N -0.61 -15.29 3.12 -806.65 -2.52 -17.81 16 22 C 0.52 15.47 5.69 87.66 0.50 15.97 16 23 O -0.53 -21.52 9.29 20.79 0.19 -21.32 16 24 C -0.08 -1.55 0.75 -52.93 -0.04 -1.59 16 25 C -0.12 -2.78 7.73 71.98 0.56 -2.22 16 26 C -0.15 -1.76 7.37 71.98 0.53 -1.23 16 27 C -0.14 -2.45 8.29 71.98 0.60 -1.85 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 5.49 2.45 -25.44 -0.06 5.43 16 30 H 0.01 0.32 7.85 -2.39 -0.02 0.30 16 31 H 0.06 3.76 5.95 -2.39 -0.01 3.75 16 32 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.40 14.21 8.54 -92.71 -0.79 13.42 16 35 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 36 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.11 1.56 5.38 -2.39 -0.01 1.55 16 38 H 0.14 1.51 5.49 -2.39 -0.01 1.50 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 41 H 0.03 0.98 7.99 -2.39 -0.02 0.96 16 42 H 0.09 0.68 4.80 -2.39 -0.01 0.66 16 43 H 0.09 0.74 8.00 -2.39 -0.02 0.72 16 44 H 0.06 0.77 7.99 -2.39 -0.02 0.75 16 45 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 46 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 47 H 0.08 1.07 5.12 -2.39 -0.01 1.06 16 Total: -1.00 -77.28 361.00 2.21 -75.07 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.14 Total: 29.02 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.44 Total: 9.72 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.52 Total: -104.45 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: 0.43 Total: -48.38 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -4.59 SS G_CDS: -1.32 Total: -5.91 kcal Total: -77.28 2.21 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183944453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.810 kcal (2) G-P(sol) polarization free energy of solvation -77.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds