Wall clock time and date at job start Tue Mar 31 2020 14:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34116 * 125.15308 * 2 1 4 4 C 1.38049 * 107.87738 * 180.02562 * 3 2 1 5 5 C 1.47145 * 126.81798 * 179.97438 * 4 3 2 6 6 O 1.21537 * 119.99683 * 179.97438 * 5 4 3 7 7 O 1.34775 * 120.00043 * 0.02562 * 5 4 3 8 8 C 1.45206 * 116.99694 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46798 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47083 * 300.00030 * 9 8 7 11 11 C 1.52996 * 109.47028 * 60.00063 * 9 8 7 12 12 C 1.50700 * 109.46888 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00266 * 1.36421 * 12 9 8 14 14 C 1.37874 * 119.99850 * 181.35396 * 12 9 8 15 15 N 1.31516 * 120.00047 * 193.96214 * 14 12 9 16 16 Si 1.86805 * 119.99880 * 13.97092 * 14 12 9 17 17 H 1.48497 * 109.46944 * 84.55151 * 16 14 12 18 18 H 1.48499 * 109.46932 * 204.54979 * 16 14 12 19 19 H 1.48498 * 109.47153 * 324.54867 * 16 14 12 20 20 C 1.46637 * 106.35971 * 359.97438 * 4 3 2 21 21 C 1.48287 * 126.51360 * 179.97438 * 20 4 3 22 22 C 1.39388 * 120.12211 * 145.00174 * 21 20 4 23 23 C 1.38001 * 119.87343 * 179.97438 * 22 21 20 24 24 C 1.38329 * 120.12495 * 359.97438 * 23 22 21 25 25 C 1.38321 * 120.25614 * 0.02562 * 24 23 22 26 26 C 1.38014 * 120.12384 * 359.97438 * 25 24 23 27 27 N 1.31343 * 106.96799 * 0.26586 * 20 4 3 28 28 H 1.08997 * 109.47280 * 90.00192 * 1 2 3 29 29 H 1.09001 * 109.47864 * 210.00662 * 1 2 3 30 30 H 1.09004 * 109.47289 * 330.00639 * 1 2 3 31 31 H 1.08001 * 126.06703 * 0.03186 * 3 2 1 32 32 H 1.09000 * 109.46800 * 299.99857 * 8 7 5 33 33 H 1.08997 * 109.46973 * 60.00191 * 8 7 5 34 34 H 1.09004 * 109.46951 * 69.31514 * 10 9 8 35 35 H 1.08993 * 109.47093 * 189.32162 * 10 9 8 36 36 H 1.09006 * 109.46975 * 309.31871 * 10 9 8 37 37 H 1.08999 * 109.47345 * 60.00564 * 11 9 8 38 38 H 1.09006 * 109.46708 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47426 * 299.99568 * 11 9 8 40 40 H 0.96996 * 119.99776 * 180.02562 * 15 14 12 41 41 H 1.08004 * 120.06180 * 359.95574 * 22 21 20 42 42 H 1.08006 * 119.94004 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.87237 * 179.72089 * 24 23 22 44 44 H 1.08003 * 119.94363 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.06083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2371 1.0966 0.0000 4 6 3.5553 0.6866 -0.0006 5 6 4.7472 1.5495 -0.0013 6 8 5.8566 1.0533 -0.0013 7 8 4.6085 2.8901 -0.0010 8 6 5.8276 3.6789 -0.0012 9 6 5.4721 5.1671 0.0000 10 6 4.6514 5.4963 -1.2486 11 6 4.6529 5.4948 1.2498 12 6 6.7374 5.9857 0.0004 13 1 7.6987 5.4941 -0.0224 14 6 6.6677 7.3624 0.0296 15 7 7.7347 8.0808 -0.2444 16 14 5.0577 8.2072 0.4585 17 1 4.9263 8.3018 1.9346 18 1 5.0429 9.5713 -0.1281 19 1 3.9242 7.4201 -0.0900 20 6 3.5319 -0.7796 -0.0003 21 6 4.7094 -1.6809 -0.0013 22 6 4.6653 -2.8902 0.6904 23 6 5.7639 -3.7253 0.6857 24 6 6.9073 -3.3644 -0.0043 25 6 6.9568 -2.1656 -0.6925 26 6 5.8641 -1.3225 -0.6947 27 7 2.2697 -1.1428 -0.0055 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3635 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.8894 2.1191 0.0005 32 1 6.4120 3.4446 0.8886 33 1 6.4115 3.4451 -0.8914 34 1 3.6675 5.0339 -1.1691 35 1 4.5391 6.5770 -1.3351 36 1 5.1630 5.1125 -2.1313 37 1 5.2376 5.2603 2.1393 38 1 4.4000 6.5551 1.2508 39 1 3.7377 4.9027 1.2500 40 1 7.6857 9.0493 -0.2234 41 1 3.7731 -3.1729 1.2294 42 1 5.7308 -4.6628 1.2210 43 1 7.7664 -4.0190 -0.0016 44 1 7.8519 -1.8891 -1.2299 45 1 5.9038 -0.3869 -1.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184789277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:37 Heat of formation + Delta-G solvation = 35.446817 kcal Electronic energy + Delta-G solvation = -27652.191598 eV Core-core repulsion = 23830.468394 eV Total energy + Delta-G solvation = -3821.723204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36918 -39.55906 -38.86739 -36.73217 -34.98969 -33.89518 -31.76962 -31.21009 -30.87204 -30.40948 -27.23283 -26.33485 -26.09926 -24.93211 -23.59979 -22.71512 -22.28858 -20.49812 -19.75172 -19.10818 -17.83157 -17.02813 -16.36499 -16.07813 -15.95461 -15.77760 -15.49388 -15.24190 -14.95661 -14.80735 -13.96358 -13.61255 -13.41929 -13.33220 -13.16897 -13.01299 -12.87657 -12.82170 -12.50703 -12.27467 -12.02715 -11.91458 -11.66226 -11.39073 -11.25406 -10.90517 -10.43798 -10.33109 -10.23802 -10.08266 -10.04379 -9.91207 -9.68559 -9.10874 -8.99164 -8.82341 -8.65715 -8.47061 -8.38979 -6.16098 -4.14161 0.93490 1.31253 1.49314 2.04652 2.20189 3.23194 3.26112 3.33834 3.34546 3.39588 3.86102 4.07808 4.35992 4.36031 4.60460 4.77338 4.91358 4.99744 5.03360 5.07740 5.15747 5.23356 5.26744 5.44567 5.52034 5.64847 5.81389 5.84898 5.94067 6.07342 6.12136 6.15851 6.30761 6.46790 6.52229 6.52947 6.57056 6.59222 6.62714 6.69591 6.76730 6.89194 6.98892 7.11675 7.22099 7.32182 7.44821 7.70944 8.29241 8.42275 8.87115 9.47452 10.96741 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003302 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.663214 B = 8477.513748 C =10078.779605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 C 0.132 3.868 4 C -0.269 4.269 5 C 0.534 3.466 6 O -0.511 6.511 7 O -0.354 6.354 8 C 0.096 3.904 9 C 0.043 3.957 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.518 4.518 13 H 0.076 0.924 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.885 3.115 17 H -0.285 1.285 18 H -0.305 1.305 19 H -0.246 1.246 20 C 0.177 3.823 21 C -0.033 4.033 22 C -0.087 4.087 23 C -0.137 4.137 24 C -0.106 4.106 25 C -0.128 4.128 26 C -0.052 4.052 27 N -0.288 5.288 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.607 -19.660 0.268 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.017 4.017 4 C -0.282 4.282 5 C 0.379 3.621 6 O -0.402 6.402 7 O -0.270 6.270 8 C 0.024 3.976 9 C 0.042 3.958 10 C -0.196 4.196 11 C -0.202 4.202 12 C -0.556 4.556 13 H 0.094 0.906 14 C -0.125 4.125 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.213 1.213 18 H -0.234 1.234 19 H -0.172 1.172 20 C 0.009 3.991 21 C -0.035 4.035 22 C -0.107 4.107 23 C -0.155 4.155 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.071 4.071 27 N -0.107 5.107 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.213 0.787 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.210 -20.530 0.242 24.970 hybrid contribution -0.191 1.440 0.415 1.511 sum -14.401 -19.090 0.657 23.921 Atomic orbital electron populations 1.22020 0.73342 1.05071 1.03999 1.48162 1.07292 1.03441 1.55688 1.23212 0.90321 0.93748 0.94437 1.20461 0.91472 0.91701 1.24571 1.19817 0.87583 0.81708 0.72964 1.90787 1.27103 1.75163 1.47113 1.86512 1.40110 1.17092 1.83333 1.23380 0.82241 0.90302 1.01712 1.18581 0.95939 0.88939 0.92300 1.22218 0.97684 1.01049 0.98652 1.22286 0.98947 0.99317 0.99650 1.20676 0.91446 0.90811 1.52623 0.90577 1.24915 0.96363 0.97166 0.94034 1.69945 1.29666 1.06172 1.46901 0.87289 0.85466 0.77155 0.78350 1.21284 1.23385 1.17237 1.21824 0.91190 0.90324 0.95807 1.17671 0.91042 0.93392 1.01376 1.21133 0.98529 0.92882 0.98112 1.20971 0.93554 0.99922 1.01019 1.21264 0.97814 0.96713 0.96708 1.21114 0.98688 0.94343 1.00513 1.21638 0.90933 0.98527 0.96003 1.77359 1.01049 1.06710 1.25601 0.90154 0.88893 0.88790 0.78740 0.91768 0.91659 0.95062 0.92786 0.93769 0.93174 0.94268 0.94202 0.92478 0.85990 0.86003 0.86131 0.85663 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.39 59.84 0.68 1.20 16 2 N -0.37 -3.87 3.95 -67.64 -0.27 -4.14 16 3 C 0.13 1.51 11.28 -16.62 -0.19 1.32 16 4 C -0.27 -4.01 6.26 -102.96 -0.64 -4.65 16 5 C 0.53 9.32 7.81 34.35 0.27 9.59 16 6 O -0.51 -9.78 12.23 -19.29 -0.24 -10.01 16 7 O -0.35 -6.45 8.91 -40.70 -0.36 -6.81 16 8 C 0.10 1.99 4.26 37.16 0.16 2.15 16 9 C 0.04 0.98 0.58 -155.66 -0.09 0.89 16 10 C -0.14 -2.94 7.58 37.16 0.28 -2.66 16 11 C -0.15 -3.08 7.55 37.16 0.28 -2.80 16 12 C -0.52 -14.05 8.62 -34.44 -0.30 -14.34 16 13 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.08 2.18 5.32 -17.82 -0.09 2.08 16 15 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 16 Si 0.88 21.22 22.79 -169.99 -3.87 17.35 16 17 H -0.29 -6.80 7.10 56.52 0.40 -6.40 16 18 H -0.31 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.25 -5.42 4.65 56.52 0.26 -5.15 16 20 C 0.18 2.60 6.94 -80.56 -0.56 2.04 16 21 C -0.03 -0.47 5.73 -104.91 -0.60 -1.07 16 22 C -0.09 -1.08 9.76 -39.24 -0.38 -1.47 16 23 C -0.14 -1.47 10.03 -39.63 -0.40 -1.87 16 24 C -0.11 -1.16 10.04 -39.52 -0.40 -1.55 16 25 C -0.13 -1.61 10.03 -39.63 -0.40 -2.01 16 26 C -0.05 -0.76 7.78 -39.24 -0.31 -1.06 16 27 N -0.29 -3.85 12.47 34.58 0.43 -3.42 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.03 0.58 7.94 -51.93 -0.41 0.16 16 35 H 0.05 1.20 4.30 -51.93 -0.22 0.97 16 36 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.86 2.25 -51.93 -0.12 0.75 16 39 H 0.04 0.73 7.68 -51.93 -0.40 0.34 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 45 H 0.14 2.29 5.65 -52.49 -0.30 2.00 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -33.08 365.50 -6.92 -40.00 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.21 Total: 1.59 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.68 Total: -14.22 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.94 Total: -33.40 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.60 Total: -16.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -3.87 Total: 17.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.08 -6.92 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184789277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.449 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds