Wall clock time and date at job start Tue Mar 31 2020 14:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34116 * 125.15308 * 2 1 4 4 C 1.38049 * 107.87738 * 180.02562 * 3 2 1 5 5 C 1.47145 * 126.81798 * 179.97438 * 4 3 2 6 6 O 1.21537 * 119.99683 * 179.97438 * 5 4 3 7 7 O 1.34775 * 120.00043 * 0.02562 * 5 4 3 8 8 C 1.45206 * 116.99694 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46798 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47083 * 300.00030 * 9 8 7 11 11 C 1.52996 * 109.47028 * 60.00063 * 9 8 7 12 12 C 1.50700 * 109.46888 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00266 * 1.36421 * 12 9 8 14 14 C 1.37874 * 119.99850 * 181.35396 * 12 9 8 15 15 N 1.31516 * 120.00047 * 193.96214 * 14 12 9 16 16 Si 1.86805 * 119.99880 * 13.97092 * 14 12 9 17 17 H 1.48497 * 109.46944 * 84.55151 * 16 14 12 18 18 H 1.48499 * 109.46932 * 204.54979 * 16 14 12 19 19 H 1.48498 * 109.47153 * 324.54867 * 16 14 12 20 20 C 1.46637 * 106.35971 * 359.97438 * 4 3 2 21 21 C 1.48287 * 126.51360 * 179.97438 * 20 4 3 22 22 C 1.39388 * 120.12211 * 145.00174 * 21 20 4 23 23 C 1.38001 * 119.87343 * 179.97438 * 22 21 20 24 24 C 1.38329 * 120.12495 * 359.97438 * 23 22 21 25 25 C 1.38321 * 120.25614 * 0.02562 * 24 23 22 26 26 C 1.38014 * 120.12384 * 359.97438 * 25 24 23 27 27 N 1.31343 * 106.96799 * 0.26586 * 20 4 3 28 28 H 1.08997 * 109.47280 * 90.00192 * 1 2 3 29 29 H 1.09001 * 109.47864 * 210.00662 * 1 2 3 30 30 H 1.09004 * 109.47289 * 330.00639 * 1 2 3 31 31 H 1.08001 * 126.06703 * 0.03186 * 3 2 1 32 32 H 1.09000 * 109.46800 * 299.99857 * 8 7 5 33 33 H 1.08997 * 109.46973 * 60.00191 * 8 7 5 34 34 H 1.09004 * 109.46951 * 69.31514 * 10 9 8 35 35 H 1.08993 * 109.47093 * 189.32162 * 10 9 8 36 36 H 1.09006 * 109.46975 * 309.31871 * 10 9 8 37 37 H 1.08999 * 109.47345 * 60.00564 * 11 9 8 38 38 H 1.09006 * 109.46708 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47426 * 299.99568 * 11 9 8 40 40 H 0.96996 * 119.99776 * 180.02562 * 15 14 12 41 41 H 1.08004 * 120.06180 * 359.95574 * 22 21 20 42 42 H 1.08006 * 119.94004 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.87237 * 179.72089 * 24 23 22 44 44 H 1.08003 * 119.94363 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.06083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2371 1.0966 0.0000 4 6 3.5553 0.6866 -0.0006 5 6 4.7472 1.5495 -0.0013 6 8 5.8566 1.0533 -0.0013 7 8 4.6085 2.8901 -0.0010 8 6 5.8276 3.6789 -0.0012 9 6 5.4721 5.1671 0.0000 10 6 4.6514 5.4963 -1.2486 11 6 4.6529 5.4948 1.2498 12 6 6.7374 5.9857 0.0004 13 1 7.6987 5.4941 -0.0224 14 6 6.6677 7.3624 0.0296 15 7 7.7347 8.0808 -0.2444 16 14 5.0577 8.2072 0.4585 17 1 4.9263 8.3018 1.9346 18 1 5.0429 9.5713 -0.1281 19 1 3.9242 7.4201 -0.0900 20 6 3.5319 -0.7796 -0.0003 21 6 4.7094 -1.6809 -0.0013 22 6 4.6653 -2.8902 0.6904 23 6 5.7639 -3.7253 0.6857 24 6 6.9073 -3.3644 -0.0043 25 6 6.9568 -2.1656 -0.6925 26 6 5.8641 -1.3225 -0.6947 27 7 2.2697 -1.1428 -0.0055 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3635 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.8894 2.1191 0.0005 32 1 6.4120 3.4446 0.8886 33 1 6.4115 3.4451 -0.8914 34 1 3.6675 5.0339 -1.1691 35 1 4.5391 6.5770 -1.3351 36 1 5.1630 5.1125 -2.1313 37 1 5.2376 5.2603 2.1393 38 1 4.4000 6.5551 1.2508 39 1 3.7377 4.9027 1.2500 40 1 7.6857 9.0493 -0.2234 41 1 3.7731 -3.1729 1.2294 42 1 5.7308 -4.6628 1.2210 43 1 7.7664 -4.0190 -0.0016 44 1 7.8519 -1.8891 -1.2299 45 1 5.9038 -0.3869 -1.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184789277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:37 Heat of formation + Delta-G solvation = 15.791729 kcal Electronic energy + Delta-G solvation = -27653.043907 eV Core-core repulsion = 23830.468394 eV Total energy + Delta-G solvation = -3822.575512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33809 -40.94249 -39.80163 -38.36384 -36.59512 -34.72927 -33.83426 -32.17097 -31.78116 -31.36571 -28.32431 -27.96377 -27.42102 -26.96361 -24.72772 -23.61318 -23.32050 -21.60883 -20.88429 -20.76233 -18.96466 -18.29414 -17.90101 -17.45376 -17.22613 -17.14388 -16.76885 -16.48540 -16.01478 -15.73455 -15.07119 -14.97994 -14.81532 -14.72746 -14.28061 -14.18138 -14.08718 -13.88790 -13.71348 -13.64474 -13.37395 -13.33603 -13.13634 -12.42639 -12.38379 -12.21917 -12.12045 -11.97177 -11.85161 -11.78198 -11.41627 -11.23595 -11.04462 -10.90393 -10.60835 -10.38724 -9.97590 -9.78513 -9.34018 -8.31644 -6.34339 -0.05371 0.33859 0.54040 1.14880 1.29985 1.38706 1.39058 1.52404 1.87359 2.12578 2.35072 2.91322 3.04633 3.17668 3.47851 3.95217 4.03816 4.08475 4.14125 4.14852 4.19214 4.30639 4.34627 4.44423 4.45449 4.46236 4.56952 4.67477 4.72169 4.73745 4.84293 4.87448 4.91646 4.97659 5.13393 5.14222 5.17502 5.21065 5.47350 5.52937 5.58313 5.62285 5.67542 5.71933 5.77468 5.80119 6.07641 6.27719 6.36565 6.68986 6.91697 7.30923 8.85234 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003302 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.663214 B = 8477.513748 C =10078.779605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.356 5.356 3 C 0.157 3.843 4 C -0.308 4.308 5 C 0.532 3.468 6 O -0.538 6.538 7 O -0.344 6.344 8 C 0.110 3.890 9 C 0.040 3.960 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.524 4.524 13 H 0.030 0.970 14 C 0.021 3.979 15 N -0.943 5.943 16 Si 0.943 3.057 17 H -0.280 1.280 18 H -0.312 1.312 19 H -0.205 1.205 20 C 0.163 3.837 21 C -0.055 4.055 22 C -0.095 4.095 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.076 4.076 27 N -0.301 5.301 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.232 0.768 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.266 0.734 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.134 0.866 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 -21.069 1.014 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.133 5.133 3 C 0.005 3.995 4 C -0.321 4.321 5 C 0.379 3.621 6 O -0.430 6.430 7 O -0.261 6.261 8 C 0.036 3.964 9 C 0.039 3.961 10 C -0.194 4.194 11 C -0.200 4.200 12 C -0.562 4.562 13 H 0.048 0.952 14 C -0.177 4.177 15 N -0.582 5.582 16 Si 0.772 3.228 17 H -0.207 1.207 18 H -0.241 1.241 19 H -0.128 1.128 20 C -0.004 4.004 21 C -0.057 4.057 22 C -0.114 4.114 23 C -0.149 4.149 24 C -0.122 4.122 25 C -0.159 4.159 26 C -0.096 4.096 27 N -0.121 5.121 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.248 0.752 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.152 0.848 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.298 -21.996 0.986 28.629 hybrid contribution 1.081 1.716 0.159 2.034 sum -17.217 -20.280 1.144 26.627 Atomic orbital electron populations 1.22531 0.70074 1.07119 1.05753 1.48635 1.08921 1.02454 1.53332 1.23662 0.88976 0.95228 0.91643 1.20392 0.91859 0.91534 1.28329 1.20301 0.88387 0.81254 0.72173 1.90789 1.28471 1.75294 1.48424 1.86469 1.38129 1.17650 1.83815 1.22919 0.83053 0.90087 1.00337 1.18514 0.94296 0.89000 0.94275 1.22152 0.99124 1.00707 0.97380 1.22232 1.00036 0.99597 0.98161 1.20959 0.91927 0.91511 1.51767 0.95204 1.25799 1.00220 0.97864 0.93787 1.70097 1.32564 1.06502 1.49075 0.86343 0.82300 0.75830 0.78353 1.20687 1.24135 1.12838 1.21957 0.91762 0.90466 0.96255 1.17900 0.91173 0.94481 1.02166 1.21345 0.99620 0.92481 0.97970 1.21387 0.92665 1.00629 1.00225 1.21626 0.98953 0.96149 0.95473 1.21339 0.98427 0.95031 1.01100 1.21535 0.92344 0.98415 0.97272 1.77307 1.00743 1.08204 1.25887 0.88485 0.88170 0.85527 0.75190 0.93243 0.93230 0.91469 0.93563 0.94293 0.93732 0.94610 0.90600 0.92479 0.85017 0.82712 0.83008 0.84834 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.39 127.77 1.46 1.99 16 2 N -0.36 -6.39 3.95 -367.91 -1.45 -7.84 16 3 C 0.16 3.08 11.28 84.30 0.95 4.03 16 4 C -0.31 -8.94 6.26 -18.79 -0.12 -9.06 16 5 C 0.53 18.74 7.81 70.16 0.55 19.29 16 6 O -0.54 -21.70 12.23 19.72 0.24 -21.46 16 7 O -0.34 -12.17 8.91 -56.86 -0.51 -12.68 16 8 C 0.11 4.61 4.26 71.98 0.31 4.92 16 9 C 0.04 1.77 0.58 -52.93 -0.03 1.74 16 10 C -0.14 -5.46 7.58 71.98 0.55 -4.91 16 11 C -0.14 -5.68 7.55 71.98 0.54 -5.14 16 12 C -0.52 -29.36 8.62 25.60 0.22 -29.14 16 13 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 14 C 0.02 1.21 5.32 84.65 0.45 1.66 16 15 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 16 Si 0.94 42.93 22.79 68.60 1.56 44.49 16 17 H -0.28 -12.44 7.10 99.48 0.71 -11.73 16 18 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 19 H -0.20 -7.96 4.65 99.48 0.46 -7.50 16 20 C 0.16 4.78 6.94 44.09 0.31 5.09 16 21 C -0.06 -1.63 5.73 -20.05 -0.11 -1.74 16 22 C -0.09 -2.29 9.76 22.49 0.22 -2.07 16 23 C -0.13 -2.58 10.03 22.24 0.22 -2.36 16 24 C -0.10 -2.10 10.04 22.31 0.22 -1.88 16 25 C -0.14 -3.61 10.03 22.24 0.22 -3.38 16 26 C -0.08 -2.36 7.78 22.49 0.17 -2.18 16 27 N -0.30 -7.64 12.47 -44.51 -0.56 -8.19 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.13 0.05 8.13 -2.38 -0.02 0.04 16 31 H 0.23 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.20 7.94 -2.38 -0.02 2.19 16 35 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 36 H 0.04 1.56 8.12 -2.38 -0.02 1.54 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.44 2.25 -2.38 -0.01 1.44 16 39 H 0.08 2.45 7.68 -2.39 -0.02 2.44 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.12 4.17 5.65 -2.91 -0.02 4.15 16 Total: -1.00 -76.86 365.50 6.48 -70.39 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.76 Total: 16.73 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 6.13 Total: -23.15 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.71 Total: -74.32 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.27 Total: -34.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.56 Total: 44.49 kcal Total: -76.86 6.48 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184789277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.180 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds