Wall clock time and date at job start Tue Mar 31 2020 14:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.50707 * 109.47510 * 240.00738 * 2 1 3 5 5 H 1.08003 * 119.99983 * 240.00144 * 4 2 1 6 6 C 1.37875 * 120.00019 * 59.99064 * 4 2 1 7 7 N 1.31516 * 120.00140 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99884 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47088 * 90.00260 * 8 6 4 10 10 H 1.48502 * 109.47068 * 210.00254 * 8 6 4 11 11 H 1.48497 * 109.47049 * 330.00119 * 8 6 4 12 12 C 1.53000 * 109.47564 * 120.00064 * 2 1 3 13 13 O 1.45192 * 109.47331 * 300.00449 * 12 2 1 14 14 C 1.34748 * 117.00155 * 179.97438 * 13 12 2 15 15 O 1.21526 * 120.00447 * 0.02562 * 14 13 12 16 16 C 1.47290 * 119.99938 * 179.97438 * 14 13 12 17 17 C 1.41338 * 126.42941 * 359.97261 * 16 14 13 18 18 N 1.30428 * 108.01797 * 179.78080 * 17 16 14 19 19 N 1.39929 * 108.91535 * 0.38110 * 18 17 16 20 20 C 1.46503 * 125.74546 * 179.87450 * 19 18 17 21 21 C 1.50706 * 109.46722 * 304.69309 * 20 19 18 22 22 C 1.38238 * 119.99727 * 90.00230 * 21 20 19 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01721 * 21 20 19 27 27 C 1.34227 * 108.51282 * 359.61167 * 19 18 17 28 28 H 1.08999 * 109.47057 * 299.99339 * 1 2 3 29 29 H 1.09004 * 109.47206 * 59.99718 * 1 2 3 30 30 H 1.09008 * 109.46564 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47522 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47306 * 300.00434 * 3 2 1 33 33 H 1.08999 * 109.46648 * 60.00410 * 3 2 1 34 34 H 0.96994 * 120.00011 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47220 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.46608 * 60.00698 * 12 2 1 37 37 H 1.08009 * 125.99286 * 359.97438 * 17 16 14 38 38 H 1.09000 * 109.47286 * 184.69788 * 20 19 18 39 39 H 1.08993 * 109.47262 * 64.69126 * 20 19 18 40 40 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 45 45 H 1.08006 * 126.29660 * 180.22102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6534 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3215 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1409 -5.1123 11 1 3.6295 -1.7578 -3.7123 12 6 2.0401 -0.7212 1.2492 13 8 1.5561 -0.0369 2.4348 14 6 1.9178 -0.5493 3.6274 15 8 2.6190 -1.5407 3.6754 16 6 1.4643 0.0929 4.8729 17 6 0.6516 1.2447 4.9756 18 7 0.4674 1.4969 6.2420 19 7 1.1501 0.5386 6.9993 20 6 1.1935 0.4760 8.4623 21 6 1.6907 1.7904 9.0067 22 6 0.7931 2.7979 9.3071 23 6 1.2493 4.0037 9.8060 24 6 2.6028 4.2019 10.0049 25 6 3.5007 3.1961 9.6999 26 6 3.0442 1.9886 9.2054 27 6 1.7538 -0.3172 6.1597 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 0.7087 1.1615 -3.4843 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7490 1.2491 37 1 0.2506 1.8143 4.1502 38 1 1.8666 -0.3234 8.7720 39 1 0.1932 0.2783 8.8474 40 1 -0.2643 2.6432 9.1513 41 1 0.5481 4.7910 10.0403 42 1 2.9591 5.1441 10.3943 43 1 4.5586 3.3524 9.8512 44 1 3.7455 1.2017 8.9701 45 1 2.3554 -1.1696 6.4389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184789535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:58 Heat of formation + Delta-G solvation = -4.356707 kcal Electronic energy + Delta-G solvation = -26665.821204 eV Core-core repulsion = 22842.371990 eV Total energy + Delta-G solvation = -3823.449214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.46295 -40.93557 -40.03956 -38.14124 -36.48574 -35.22139 -33.23809 -31.99083 -31.81811 -31.35968 -28.00615 -27.53236 -27.33509 -26.84497 -24.24946 -23.50755 -22.99594 -21.59888 -21.31199 -20.63758 -19.13497 -17.90569 -17.69653 -17.58242 -17.25304 -16.93932 -16.61531 -16.41812 -16.02977 -15.59095 -15.29649 -14.93254 -14.63818 -14.61099 -14.31939 -14.02819 -13.87210 -13.59212 -13.50986 -13.34763 -13.24371 -13.09904 -12.79324 -12.60046 -12.31156 -12.29215 -12.11737 -12.06317 -11.91502 -11.66581 -11.42383 -11.21591 -11.12942 -10.69876 -10.62242 -10.37650 -9.90873 -9.84216 -9.76144 -8.01756 -6.19625 0.17473 0.38307 0.48113 1.05304 1.41134 1.44917 1.46792 1.55670 2.01585 2.22567 2.48408 2.87154 3.21454 3.40095 3.72451 3.77752 3.90559 4.02727 4.09987 4.16218 4.25469 4.33241 4.34242 4.38077 4.46423 4.59924 4.60470 4.71040 4.71921 4.92005 5.01881 5.09155 5.11767 5.24498 5.27448 5.34340 5.42108 5.51101 5.57292 5.59408 5.64202 5.67596 5.72267 5.78910 6.05862 6.11285 6.21579 6.40392 6.46911 6.83302 6.94128 7.48021 8.97905 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.002132 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.473289 B =13130.114311 C =13404.759339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.061 3.939 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.050 0.950 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.099 3.901 13 O -0.349 6.349 14 C 0.534 3.466 15 O -0.559 6.559 16 C -0.304 4.304 17 C 0.099 3.901 18 N -0.307 5.307 19 N -0.346 5.346 20 C 0.164 3.836 21 C -0.124 4.124 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.109 4.109 27 C 0.152 3.848 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.200 0.800 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 3.704 28.497 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.061 3.939 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.068 0.932 6 C -0.174 4.174 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.026 3.974 13 O -0.265 6.265 14 C 0.382 3.618 15 O -0.452 6.452 16 C -0.317 4.317 17 C -0.089 4.089 18 N -0.126 5.126 19 N -0.123 5.123 20 C 0.046 3.954 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.001 4.001 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.217 0.783 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.414 4.322 29.353 29.673 hybrid contribution 0.759 -1.002 -1.901 2.279 sum 1.173 3.319 27.452 27.677 Atomic orbital electron populations 1.21617 0.97091 0.98577 1.00314 1.18266 0.93630 0.93244 0.88774 1.21619 0.97701 0.97996 1.00303 1.21207 1.32210 1.12416 0.91147 0.93211 1.25523 0.95055 0.95588 1.01186 1.69945 1.36817 1.23280 1.23780 0.85643 0.78712 0.78389 0.79377 1.20289 1.20739 1.19782 1.23229 0.97468 0.95177 0.81550 1.86540 1.69498 1.55650 1.14768 1.20522 0.76210 0.80915 0.84157 1.90758 1.38476 1.27296 1.88656 1.19397 1.16485 1.05025 0.90792 1.24381 0.94907 0.94583 0.95048 1.77201 1.19072 1.12968 1.03406 1.48909 1.36119 1.19765 1.07537 1.21148 1.05721 0.96944 0.71570 1.19880 0.94188 0.96335 1.02033 1.21252 1.00078 0.93200 0.96873 1.21446 0.96454 0.97694 0.99788 1.21545 0.93487 0.99789 0.98755 1.21448 1.00830 0.93575 0.99585 1.21344 0.94901 0.98384 0.98151 1.23337 0.93885 0.94978 0.87914 0.94822 0.91853 0.96181 0.96216 0.91823 0.94874 0.92885 0.93348 0.93259 0.78318 0.83792 0.86750 0.85446 0.84507 0.84270 0.84365 0.84551 0.76336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.11 71.98 0.58 -5.21 16 2 C 0.06 3.06 0.58 -52.93 -0.03 3.03 16 3 C -0.12 -5.82 8.11 71.98 0.58 -5.23 16 4 C -0.53 -28.97 8.01 25.60 0.21 -28.77 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.42 5.15 84.65 0.44 1.86 16 7 N -0.90 -49.61 9.35 21.45 0.20 -49.41 16 8 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.10 4.55 4.27 71.98 0.31 4.86 16 13 O -0.35 -14.40 8.73 -56.59 -0.49 -14.89 16 14 C 0.53 19.92 7.95 70.20 0.56 20.48 16 15 O -0.56 -22.96 16.69 19.75 0.33 -22.63 16 16 C -0.30 -8.82 6.13 -20.16 -0.12 -8.95 16 17 C 0.10 2.69 11.87 85.66 1.02 3.71 16 18 N -0.31 -7.65 12.32 -56.25 -0.69 -8.34 16 19 N -0.35 -6.51 3.64 -349.97 -1.27 -7.79 16 20 C 0.16 1.75 6.61 85.63 0.57 2.32 16 21 C -0.12 -1.72 5.31 -19.86 -0.11 -1.83 16 22 C -0.10 -1.43 9.70 22.27 0.22 -1.21 16 23 C -0.14 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 25 C -0.14 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.11 -1.47 9.70 22.27 0.22 -1.25 16 27 C 0.15 3.16 11.25 84.30 0.95 4.10 16 28 H 0.03 1.49 7.68 -2.39 -0.02 1.47 16 29 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 30 H 0.02 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 33 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 34 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.20 5.12 8.06 -2.91 -0.02 5.10 16 38 H 0.14 0.52 8.00 -2.39 -0.02 0.50 16 39 H 0.11 0.91 8.08 -2.39 -0.02 0.90 16 40 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -68.47 383.08 7.13 -61.34 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.98 Total: 13.25 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 6.05 Total: -16.67 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -1.76 Total: -65.53 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.16 Total: -37.52 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.47 7.13 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184789535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.983 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds