Wall clock time and date at job start Tue Mar 31 2020 15:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47444 * 54.99564 * 3 2 1 5 5 C 1.50702 * 109.47110 * 174.99726 * 3 2 1 6 6 H 1.08000 * 120.00132 * 119.99674 * 5 3 2 7 7 C 1.37876 * 119.99862 * 299.99515 * 5 3 2 8 8 N 1.31517 * 119.99953 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47157 * 60.00224 * 9 7 5 11 11 H 1.48501 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46920 * 299.99871 * 9 7 5 13 13 O 1.45197 * 109.46798 * 294.99465 * 3 2 1 14 14 C 1.34741 * 117.00217 * 90.00283 * 13 3 2 15 15 O 1.21496 * 119.99933 * 359.97438 * 14 13 3 16 16 C 1.47539 * 120.00262 * 180.02562 * 14 13 3 17 17 C 1.41574 * 126.44828 * 180.27371 * 16 14 13 18 18 C 1.35329 * 105.55659 * 180.15016 * 17 16 14 19 19 C 1.50706 * 126.43426 * 179.86382 * 18 17 16 20 20 N 1.35874 * 107.13585 * 359.60115 * 18 17 16 21 21 C 1.40111 * 124.95426 * 180.24137 * 20 18 17 22 22 C 1.38865 * 120.07169 * 324.72876 * 21 20 18 23 23 C 1.38113 * 119.93293 * 179.74319 * 22 21 20 24 24 C 1.38282 * 120.06540 * 0.52785 * 23 22 21 25 25 C 1.50702 * 119.93055 * 179.70255 * 24 23 22 26 26 C 1.38287 * 120.14475 * 359.72199 * 24 23 22 27 27 C 1.38117 * 120.06256 * 0.02562 * 26 24 23 28 28 N 1.28474 * 110.09233 * 0.26222 * 20 18 17 29 29 H 1.08992 * 109.47525 * 300.00363 * 1 2 3 30 30 H 1.08999 * 109.46715 * 60.00556 * 1 2 3 31 31 H 1.09005 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47903 * 239.99257 * 2 1 3 33 33 H 1.09007 * 109.46960 * 119.99580 * 2 1 3 34 34 H 0.97002 * 119.99374 * 179.97438 * 8 7 5 35 35 H 1.08001 * 127.22692 * 0.04652 * 17 16 14 36 36 H 1.08999 * 109.47015 * 269.69035 * 19 18 17 37 37 H 1.09000 * 109.46646 * 29.68187 * 19 18 17 38 38 H 1.09000 * 109.47248 * 149.68905 * 19 18 17 39 39 H 1.08001 * 120.03172 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.96944 * 180.25383 * 23 22 21 41 41 H 1.09003 * 109.47228 * 270.02612 * 25 24 23 42 42 H 1.09005 * 109.47168 * 30.02113 * 25 24 23 43 43 H 1.08996 * 109.47749 * 150.02192 * 25 24 23 44 44 H 1.07995 * 119.97179 * 179.97438 * 26 24 23 45 45 H 1.08000 * 120.03637 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4060 0.3367 2.1730 9 14 6.0049 0.8813 1.3821 10 1 6.4994 2.2815 1.3824 11 1 6.3977 0.2168 2.6507 12 1 6.5975 0.1472 0.2353 13 8 1.6559 2.0915 -1.2408 14 6 0.4683 2.7277 -1.2562 15 8 -0.2276 2.7394 -0.2604 16 6 0.0123 3.4092 -2.4828 17 6 -1.2010 4.1195 -2.6489 18 6 -1.1893 4.5642 -3.9269 19 6 -2.2644 5.3764 -4.6019 20 7 -0.0234 4.1460 -4.4856 21 6 0.3741 4.4069 -5.8036 22 6 -0.5709 4.4481 -6.8202 23 6 -0.1765 4.7108 -8.1175 24 6 1.1593 4.9219 -8.4062 25 6 1.5871 5.2016 -9.8239 26 6 2.1035 4.8764 -7.3969 27 6 1.7147 4.6193 -6.0968 28 7 0.6610 3.4761 -3.6293 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0616 2.9497 35 1 -1.9747 4.2727 -1.9110 36 1 -2.9827 4.7067 -5.0748 37 1 -2.7745 5.9913 -3.8605 38 1 -1.8136 6.0185 -5.3586 39 1 -1.6137 4.2786 -6.5961 40 1 -0.9115 4.7470 -8.9080 41 1 1.8141 4.2618 -10.3271 42 1 0.7816 5.7115 -10.3526 43 1 2.4748 5.8340 -9.8176 44 1 3.1460 5.0413 -7.6256 45 1 2.4526 4.5835 -5.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187917773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:53 Heat of formation + Delta-G solvation = 12.082735 kcal Electronic energy + Delta-G solvation = -27260.268452 eV Core-core repulsion = 23437.532105 eV Total energy + Delta-G solvation = -3822.736346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.91063 -39.67465 -39.17029 -35.70857 -34.45768 -33.43712 -33.05631 -31.38817 -31.25036 -31.04678 -27.50266 -27.35182 -26.74469 -24.35534 -23.31418 -22.90213 -21.81755 -20.72417 -20.18859 -19.15855 -17.85840 -16.91699 -16.49321 -16.32954 -15.92295 -15.51116 -15.34449 -14.93509 -14.63644 -14.38052 -14.17092 -13.96170 -13.68861 -13.33291 -13.23982 -13.01693 -12.78740 -12.63174 -12.53618 -12.43363 -12.01536 -11.83916 -11.43289 -11.40587 -11.26803 -11.13336 -10.89830 -10.70588 -10.59003 -10.23889 -9.90411 -9.82435 -9.64885 -9.38955 -9.30893 -8.97966 -8.74031 -8.44377 -8.38151 -6.12281 -4.18605 0.55683 0.95345 1.84116 2.10883 2.29862 3.28927 3.31017 3.33797 3.36540 3.67262 3.76220 4.29546 4.37880 4.43690 4.44672 4.57625 4.62100 4.89245 4.93168 5.02014 5.18478 5.19501 5.20672 5.23172 5.32744 5.50482 5.56797 5.60715 5.62267 5.79074 5.85230 5.91302 5.99071 6.16431 6.30207 6.36685 6.40186 6.44180 6.54895 6.91145 6.94729 7.03248 7.24029 7.29527 7.67381 7.80143 7.89404 8.02062 8.22204 8.70619 8.96260 9.45874 10.94627 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.002969 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.442466 B = 9428.887320 C =10912.081649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.049 0.951 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.338 6.338 14 C 0.542 3.458 15 O -0.505 6.505 16 C 0.021 3.979 17 C -0.170 4.170 18 C 0.006 3.994 19 C -0.085 4.085 20 N -0.240 5.240 21 C 0.129 3.871 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.083 4.083 25 C -0.116 4.116 26 C -0.103 4.103 27 C -0.094 4.094 28 N -0.229 5.229 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.134 0.866 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 11.038 -22.351 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.253 6.253 14 C 0.383 3.617 15 O -0.393 6.393 16 C -0.139 4.139 17 C -0.197 4.197 18 C -0.115 4.115 19 C -0.143 4.143 20 N -0.024 5.024 21 C 0.039 3.961 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.084 4.084 25 C -0.172 4.172 26 C -0.122 4.122 27 C -0.114 4.114 28 N -0.062 5.062 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.152 0.848 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.657 10.573 -22.383 26.224 hybrid contribution 0.197 0.027 0.781 0.806 sum -8.460 10.600 -21.601 25.506 Atomic orbital electron populations 1.21866 0.98379 0.99037 1.00792 1.22021 0.92659 0.99288 1.03393 1.20744 0.95104 0.88833 0.78505 0.93365 1.21008 0.89637 1.38859 1.06191 0.91336 1.24874 0.99188 0.94808 0.95057 1.69886 1.35397 1.37895 1.09495 0.86338 0.83966 0.78456 0.77400 1.20013 1.21059 1.19955 1.86632 1.32950 1.61834 1.43904 1.19409 0.81157 0.76307 0.84825 1.90802 1.55869 1.58898 1.33744 1.21302 0.95302 1.04969 0.92305 1.21541 0.99282 1.02966 0.95905 1.21571 0.90908 1.04695 0.94286 1.20486 0.94625 0.98328 1.00842 1.42822 1.13513 1.37365 1.08684 1.17560 0.94508 1.03884 0.80136 1.21089 0.99487 1.01367 0.91763 1.20868 0.95732 1.00267 0.95488 1.20084 0.93372 0.98629 0.96292 1.20822 1.02100 1.02234 0.92068 1.20999 0.99954 0.99809 0.91399 1.21152 0.94207 0.97960 0.98072 1.73914 1.21307 1.11821 0.99162 0.92716 0.94963 0.94787 0.93933 0.87247 0.92380 0.81401 0.90249 0.89405 0.90801 0.84637 0.84883 0.90774 0.91301 0.91214 0.84783 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.56 37.16 0.32 -2.99 16 2 C -0.14 -3.53 5.49 -26.73 -0.15 -3.67 16 3 C 0.22 6.15 2.25 -27.88 -0.06 6.09 16 4 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -15.09 8.90 -34.44 -0.31 -15.40 16 6 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.62 11.29 55.43 0.63 -24.99 16 9 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 O -0.34 -8.85 9.81 -40.60 -0.40 -9.25 16 14 C 0.54 12.74 6.42 34.52 0.22 12.96 16 15 O -0.51 -12.43 14.11 -19.26 -0.27 -12.70 16 16 C 0.02 0.42 7.16 -82.78 -0.59 -0.17 16 17 C -0.17 -2.68 10.72 -39.35 -0.42 -3.10 16 18 C 0.01 0.07 6.75 -81.84 -0.55 -0.48 16 19 C -0.08 -0.67 8.58 36.01 0.31 -0.36 16 20 N -0.24 -3.63 3.47 -6.85 -0.02 -3.65 16 21 C 0.13 1.60 6.20 -83.61 -0.52 1.08 16 22 C -0.12 -1.07 8.21 -39.40 -0.32 -1.39 16 23 C -0.10 -0.77 9.69 -39.61 -0.38 -1.15 16 24 C -0.08 -0.63 5.88 -104.59 -0.62 -1.24 16 25 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 26 C -0.10 -0.92 9.69 -39.61 -0.38 -1.30 16 27 C -0.09 -1.11 9.68 -39.39 -0.38 -1.49 16 28 N -0.23 -4.35 11.61 33.41 0.39 -3.97 16 29 H 0.05 1.30 7.79 -51.93 -0.40 0.89 16 30 H 0.03 0.73 6.06 -51.93 -0.31 0.42 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 3.03 5.95 -51.92 -0.31 2.72 16 34 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.08 0.49 7.69 -51.93 -0.40 0.09 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.51 6.85 -51.93 -0.36 0.16 16 39 H 0.14 1.01 6.02 -52.49 -0.32 0.70 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 43 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.14 1.80 8.00 -52.49 -0.42 1.38 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -33.69 375.19 -8.86 -42.54 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.23 Total: 0.93 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.57 Total: -11.15 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.99 Total: -32.61 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.67 Total: -21.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.69 -8.86 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187917773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.624 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds