Wall clock time and date at job start Tue Mar 31 2020 15:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34739 * 116.99787 * 270.00075 * 13 3 2 15 15 O 1.21503 * 119.99913 * 0.02562 * 14 13 3 16 16 C 1.47531 * 119.99993 * 179.97438 * 14 13 3 17 17 C 1.41581 * 126.45151 * 179.71876 * 16 14 13 18 18 C 1.35336 * 105.55937 * 179.84378 * 17 16 14 19 19 C 1.50693 * 126.42867 * 180.13707 * 18 17 16 20 20 N 1.35870 * 107.13572 * 0.40775 * 18 17 16 21 21 C 1.40111 * 124.95419 * 179.74641 * 20 18 17 22 22 C 1.38850 * 120.06812 * 324.73263 * 21 20 18 23 23 C 1.38119 * 119.92920 * 179.74029 * 22 21 20 24 24 C 1.38279 * 120.06731 * 0.53026 * 23 22 21 25 25 C 1.50704 * 119.93289 * 179.69614 * 24 23 22 26 26 C 1.38290 * 120.14032 * 359.72171 * 24 23 22 27 27 C 1.38113 * 120.06397 * 0.02562 * 26 24 23 28 28 N 1.28486 * 110.09386 * 359.72764 * 20 18 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 35 35 H 1.08001 * 127.21951 * 359.97438 * 17 16 14 36 36 H 1.09008 * 109.47243 * 270.31766 * 19 18 17 37 37 H 1.08995 * 109.47682 * 30.32163 * 19 18 17 38 38 H 1.09006 * 109.46999 * 150.32807 * 19 18 17 39 39 H 1.07997 * 120.03817 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.96439 * 180.24489 * 23 22 21 41 41 H 1.08993 * 109.47668 * 270.02459 * 25 24 23 42 42 H 1.08999 * 109.46574 * 30.02494 * 25 24 23 43 43 H 1.08999 * 109.46715 * 150.02002 * 25 24 23 44 44 H 1.07998 * 119.96983 * 179.97438 * 26 24 23 45 45 H 1.07999 * 120.03473 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 8 1.6559 2.0918 1.2407 14 6 0.4682 2.7279 1.2559 15 8 -0.2276 2.7395 0.2599 16 6 0.0122 3.4095 2.4823 17 6 -1.2012 4.1200 2.6482 18 6 -1.1896 4.5648 3.9263 19 6 -2.2648 5.3770 4.6010 20 7 -0.0238 4.1466 4.4852 21 6 0.3737 4.4078 5.8031 22 6 0.0485 5.6181 6.4009 23 6 0.4372 5.8704 7.7021 24 6 1.1588 4.9235 8.4055 25 6 1.5873 5.2047 9.8227 26 6 1.4887 3.7193 7.8111 27 6 1.0985 3.4590 6.5121 28 7 0.6607 3.4765 3.6289 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0604 -2.9502 35 1 -1.9748 4.2729 1.9103 36 1 -2.0648 6.4384 4.4534 37 1 -3.2339 5.1265 4.1697 38 1 -2.2731 5.1539 5.6679 39 1 -0.5110 6.3599 5.8505 40 1 0.1811 6.8099 8.1690 41 1 2.5664 5.6834 9.8182 42 1 0.8619 5.8657 10.2971 43 1 1.6431 4.2684 10.3779 44 1 2.0528 2.9819 8.3629 45 1 1.3567 2.5185 6.0482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187917803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:58 Heat of formation + Delta-G solvation = 12.015358 kcal Electronic energy + Delta-G solvation = -27260.934186 eV Core-core repulsion = 23438.194918 eV Total energy + Delta-G solvation = -3822.739268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.90876 -39.67570 -39.17056 -35.70872 -34.45816 -33.43862 -33.05712 -31.39008 -31.25129 -31.04797 -27.50441 -27.35156 -26.74586 -24.35658 -23.31561 -22.90425 -21.81887 -20.72441 -20.19057 -19.16050 -17.85893 -16.91816 -16.49571 -16.32965 -15.92355 -15.50551 -15.34642 -14.94011 -14.65485 -14.36207 -14.17172 -13.96478 -13.68865 -13.33344 -13.24593 -12.97781 -12.80028 -12.64935 -12.58919 -12.39537 -12.01123 -11.83989 -11.45993 -11.38776 -11.27746 -11.11757 -10.92261 -10.71198 -10.57300 -10.22184 -9.91237 -9.80965 -9.65432 -9.39018 -9.31143 -8.97899 -8.72945 -8.45032 -8.38425 -6.12740 -4.18713 0.55607 0.95261 1.84054 2.10840 2.29913 3.27822 3.29020 3.34332 3.39887 3.67173 3.76470 4.29470 4.38011 4.43722 4.44579 4.57625 4.61930 4.89117 4.93116 5.01947 5.18580 5.19318 5.20793 5.23022 5.32492 5.50471 5.56745 5.60663 5.62131 5.78972 5.85120 5.91192 5.98895 6.16278 6.29819 6.36286 6.39978 6.44085 6.54589 6.91098 6.94333 7.02898 7.23685 7.29239 7.67633 7.79834 7.89418 8.01954 8.22003 8.70737 8.96756 9.45892 10.94308 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.002953 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.757014 B = 9481.147565 C =10851.410232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.049 0.951 5 C -0.517 4.517 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.338 6.338 14 C 0.542 3.458 15 O -0.505 6.505 16 C 0.021 3.979 17 C -0.170 4.170 18 C 0.006 3.994 19 C -0.085 4.085 20 N -0.240 5.240 21 C 0.129 3.871 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.083 4.083 25 C -0.116 4.116 26 C -0.103 4.103 27 C -0.094 4.094 28 N -0.229 5.229 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.265 0.735 35 H 0.168 0.832 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.134 0.866 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 10.904 22.439 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.555 4.555 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.253 6.253 14 C 0.383 3.617 15 O -0.393 6.393 16 C -0.139 4.139 17 C -0.197 4.197 18 C -0.115 4.115 19 C -0.143 4.143 20 N -0.024 5.024 21 C 0.039 3.961 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.084 4.084 25 C -0.172 4.172 26 C -0.122 4.122 27 C -0.114 4.114 28 N -0.062 5.062 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.186 0.814 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.152 0.848 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.753 10.437 22.482 26.287 hybrid contribution 0.221 0.073 -0.827 0.859 sum -8.533 10.510 21.656 25.539 Atomic orbital electron populations 1.21868 0.98371 0.99034 1.00802 1.22019 0.92662 0.99272 1.03386 1.20759 0.95150 0.88836 0.78522 0.93360 1.21090 0.89638 1.38617 1.06181 0.91227 1.24879 0.99203 0.94832 0.95072 1.69904 1.35216 1.38083 1.09467 0.86233 0.83996 0.77828 0.78183 1.19482 1.20739 1.20785 1.86634 1.32935 1.61837 1.43900 1.19409 0.81151 0.76308 0.84833 1.90804 1.55875 1.58922 1.33719 1.21304 0.95274 1.04921 0.92379 1.21544 0.99343 1.03035 0.95779 1.21568 0.90705 1.04938 0.94243 1.20485 0.95252 0.98318 1.00231 1.42825 1.13092 1.37824 1.08650 1.17555 1.01996 0.95626 0.80903 1.21090 1.01717 0.94728 0.96150 1.20872 0.98590 0.99481 0.93405 1.20085 0.97328 0.94063 0.96894 1.20821 1.01873 1.02650 0.91879 1.20996 0.99851 0.97142 0.94186 1.21141 0.96986 0.99203 0.94063 1.73921 1.20938 1.12205 0.99136 0.94785 0.92716 0.94956 0.93937 0.87252 0.92498 0.81403 0.90233 0.89412 0.90805 0.84625 0.84877 0.90765 0.91300 0.91220 0.84791 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.56 37.16 0.32 -2.98 16 2 C -0.14 -3.51 5.49 -26.73 -0.15 -3.66 16 3 C 0.22 6.12 2.25 -27.88 -0.06 6.06 16 4 H 0.05 1.47 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -15.06 8.90 -34.44 -0.31 -15.36 16 6 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.61 11.29 55.43 0.63 -24.99 16 9 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 O -0.34 -8.84 9.82 -40.60 -0.40 -9.24 16 14 C 0.54 12.74 6.42 34.52 0.22 12.96 16 15 O -0.51 -12.43 14.11 -19.27 -0.27 -12.70 16 16 C 0.02 0.42 7.16 -82.77 -0.59 -0.17 16 17 C -0.17 -2.68 10.72 -39.34 -0.42 -3.10 16 18 C 0.01 0.08 6.75 -81.84 -0.55 -0.48 16 19 C -0.08 -0.67 8.58 36.00 0.31 -0.36 16 20 N -0.24 -3.63 3.47 -6.85 -0.02 -3.65 16 21 C 0.13 1.60 6.20 -83.62 -0.52 1.08 16 22 C -0.12 -1.07 8.21 -39.40 -0.32 -1.40 16 23 C -0.10 -0.77 9.69 -39.61 -0.38 -1.16 16 24 C -0.08 -0.63 5.88 -104.59 -0.62 -1.24 16 25 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 26 C -0.10 -0.92 9.69 -39.61 -0.38 -1.30 16 27 C -0.09 -1.10 9.68 -39.40 -0.38 -1.48 16 28 N -0.23 -4.35 11.61 33.41 0.39 -3.97 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.29 7.79 -51.93 -0.40 0.89 16 31 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 3.03 5.95 -51.93 -0.31 2.72 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.08 0.49 7.69 -51.92 -0.40 0.09 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.51 6.85 -51.93 -0.36 0.15 16 39 H 0.14 1.02 6.02 -52.49 -0.32 0.71 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 43 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 1.78 8.00 -52.49 -0.42 1.36 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -33.76 375.19 -8.86 -42.62 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.23 Total: 0.78 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.57 Total: -11.13 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.99 Total: -32.60 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.67 Total: -21.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.76 -8.86 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187917803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.634 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds