Wall clock time and date at job start Tue Mar 31 2020 15:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.08999 * 109.47022 * 54.99821 * 3 2 1 5 5 C 1.50703 * 109.46863 * 174.99649 * 3 2 1 6 6 H 1.07998 * 119.99489 * 119.99842 * 5 3 2 7 7 C 1.37875 * 120.00105 * 299.99760 * 5 3 2 8 8 N 1.31514 * 120.00138 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99912 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46920 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46751 * 120.00427 * 9 7 5 12 12 H 1.48499 * 109.47370 * 240.00269 * 9 7 5 13 13 O 1.45192 * 109.46898 * 294.99734 * 3 2 1 14 14 C 1.34709 * 117.00259 * 90.00340 * 13 3 2 15 15 O 1.21461 * 119.99979 * 359.97438 * 14 13 3 16 16 C 1.47824 * 120.00300 * 179.97438 * 14 13 3 17 17 C 1.38743 * 121.34537 * 354.63254 * 16 14 13 18 18 C 1.40188 * 119.42249 * 180.02562 * 17 16 14 19 19 N 1.38733 * 118.82519 * 179.97438 * 18 17 16 20 20 C 1.46498 * 120.00321 * 10.60773 * 19 18 17 21 21 C 1.46503 * 119.99511 * 190.59656 * 19 18 17 22 22 N 1.31418 * 122.33693 * 359.43281 * 18 17 16 23 23 C 1.33597 * 122.32128 * 0.88689 * 22 18 17 24 24 C 1.40626 * 121.07342 * 179.14455 * 23 22 18 25 25 C 1.36143 * 119.72498 * 179.97438 * 24 23 22 26 26 C 1.39275 * 121.07562 * 0.02562 * 25 24 23 27 27 C 1.36351 * 120.80373 * 359.95756 * 26 25 24 28 28 C 1.39913 * 119.59186 * 0.29330 * 27 26 25 29 29 H 1.09006 * 109.47072 * 60.00484 * 1 2 3 30 30 H 1.09007 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47708 * 300.00170 * 1 2 3 32 32 H 1.09003 * 109.47388 * 239.99531 * 2 1 3 33 33 H 1.09006 * 109.46869 * 120.00030 * 2 1 3 34 34 H 0.97003 * 120.00044 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.28411 * 0.03149 * 17 16 14 36 36 H 1.08994 * 109.47085 * 5.57576 * 20 19 18 37 37 H 1.08999 * 109.47179 * 125.58164 * 20 19 18 38 38 H 1.09000 * 109.46628 * 245.58013 * 20 19 18 39 39 H 1.09002 * 109.47008 * 90.00646 * 21 19 18 40 40 H 1.08993 * 109.47018 * 210.00433 * 21 19 18 41 41 H 1.08996 * 109.47740 * 330.00850 * 21 19 18 42 42 H 1.07998 * 120.14250 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.45881 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.59830 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.20575 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8801 1.3813 10 1 6.5987 1.5452 0.1938 11 1 6.3998 1.6158 2.6094 12 1 6.4961 -0.5189 1.4629 13 8 1.6558 2.0916 -1.2407 14 6 0.4685 2.7276 -1.2561 15 8 -0.2272 2.7393 -0.2605 16 6 0.0121 3.4114 -2.4847 17 6 0.8293 3.5104 -3.6015 18 6 0.3556 4.1683 -4.7452 19 7 1.1833 4.2606 -5.8548 20 6 2.4251 3.4852 -5.9089 21 6 0.8153 5.1333 -6.9725 22 7 -0.8483 4.6916 -4.8073 23 6 -1.6997 4.6487 -3.7786 24 6 -2.9757 5.2329 -3.8677 25 6 -3.8216 5.1726 -2.8027 26 6 -3.4449 4.5404 -1.6203 27 6 -2.2158 3.9628 -1.4983 28 6 -1.3200 4.0113 -2.5719 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0610 2.9500 35 1 1.8215 3.0843 -3.5898 36 1 2.4800 2.8262 -5.0425 37 1 2.4415 2.8886 -6.8209 38 1 3.2778 4.1642 -5.9035 39 1 1.2292 6.1282 -6.8082 40 1 1.2135 4.7228 -7.9003 41 1 -0.2706 5.1984 -7.0405 42 1 -3.2835 5.7274 -4.7772 43 1 -4.8005 5.6231 -2.8757 44 1 -4.1348 4.5069 -0.7901 45 1 -1.9339 3.4747 -0.5771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187943761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:40 Heat of formation + Delta-G solvation = -12.849010 kcal Electronic energy + Delta-G solvation = -28080.766289 eV Core-core repulsion = 24256.948821 eV Total energy + Delta-G solvation = -3823.817468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81683 -39.42829 -38.10561 -35.97095 -35.37851 -33.68018 -33.10488 -31.40317 -30.25265 -29.84196 -28.35027 -27.36348 -25.74749 -24.32644 -23.35688 -22.64027 -22.06038 -20.59426 -19.65268 -18.00730 -17.68824 -17.25043 -16.53554 -16.42757 -15.60829 -15.40975 -15.27375 -14.90716 -14.71726 -14.52581 -14.25838 -13.84668 -13.67522 -13.20039 -13.01019 -12.86717 -12.66456 -12.29846 -12.22378 -12.06506 -11.79152 -11.58196 -11.50693 -11.43252 -11.29494 -11.24418 -11.02046 -10.71996 -10.33675 -10.24957 -10.04981 -9.81324 -9.50323 -9.47148 -9.16165 -8.88746 -8.52692 -8.34650 -7.46996 -6.24879 -4.32365 0.25728 1.01695 1.82941 2.77406 2.94516 3.19262 3.24060 3.28823 3.33610 3.39817 4.26112 4.26145 4.36928 4.64080 4.79936 4.94056 5.03547 5.07871 5.14183 5.15739 5.22654 5.32008 5.40024 5.48911 5.54272 5.66290 5.74199 5.76338 5.86664 6.05817 6.17747 6.18747 6.24522 6.36334 6.39944 6.56556 6.65089 6.74254 6.80796 6.88583 6.99361 7.09158 7.18014 7.22848 7.54247 7.65592 7.84333 8.07061 8.12101 8.47807 8.78317 9.33002 10.81891 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003894 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.687102 B = 7188.962022 C = 8966.597927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.346 6.346 14 C 0.501 3.499 15 O -0.497 6.497 16 C -0.020 4.020 17 C -0.153 4.153 18 C 0.422 3.578 19 N -0.613 5.613 20 C 0.086 3.914 21 C 0.099 3.901 22 N -0.541 5.541 23 C 0.176 3.824 24 C -0.119 4.119 25 C -0.089 4.089 26 C -0.146 4.146 27 C -0.077 4.077 28 C -0.113 4.113 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 7.288 -14.516 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.262 6.262 14 C 0.344 3.656 15 O -0.388 6.388 16 C -0.029 4.029 17 C -0.176 4.176 18 C 0.174 3.826 19 N -0.329 5.329 20 C -0.057 4.057 21 C -0.044 4.044 22 N -0.261 5.261 23 C 0.055 3.945 24 C -0.139 4.139 25 C -0.109 4.109 26 C -0.165 4.165 27 C -0.095 4.095 28 C -0.116 4.116 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.315 7.575 -14.863 18.640 hybrid contribution 1.228 -0.493 0.905 1.603 sum -7.087 7.082 -13.959 17.182 Atomic orbital electron populations 1.21875 0.98315 0.99214 1.00743 1.22036 0.92689 0.99161 1.03510 1.20794 0.95209 0.88805 0.78216 0.93213 1.21046 0.89434 1.39170 1.06384 0.91226 1.24874 0.99269 0.94670 0.95016 1.69891 1.35356 1.37676 1.09450 0.86232 0.83803 0.77921 0.78273 1.19475 1.20718 1.20671 1.86534 1.33003 1.62050 1.44587 1.20649 0.81309 0.76999 0.86610 1.90638 1.54809 1.58286 1.35049 1.20649 0.93274 0.96446 0.92482 1.22212 1.02094 1.01554 0.91754 1.18224 0.87706 0.90359 0.86280 1.46220 1.21876 1.47899 1.16929 1.21883 0.84738 0.95717 1.03393 1.21556 1.02491 0.92881 0.87459 1.66938 1.02356 1.26288 1.30566 1.18316 0.93548 0.95100 0.87490 1.20569 0.91867 1.01760 0.99670 1.20878 0.99219 0.97791 0.92979 1.20921 0.97098 1.00364 0.98075 1.21812 0.92347 0.96144 0.99189 1.19416 0.93441 1.02460 0.96318 0.95026 0.94672 0.92671 0.93890 0.87155 0.92352 0.82534 0.89667 0.91821 0.92109 0.93478 0.91884 0.90012 0.85168 0.85787 0.85795 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.56 37.16 0.32 -2.76 16 2 C -0.14 -3.27 5.49 -26.73 -0.15 -3.42 16 3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.06 8.90 -34.44 -0.31 -14.37 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.30 11.29 55.43 0.63 -23.67 16 9 Si 0.91 20.43 29.54 -169.99 -5.02 15.40 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 O -0.35 -7.91 9.19 -40.52 -0.37 -8.28 16 14 C 0.50 10.49 6.35 34.65 0.22 10.71 16 15 O -0.50 -11.02 10.89 -19.24 -0.21 -11.23 16 16 C -0.02 -0.36 6.08 -102.53 -0.62 -0.98 16 17 C -0.15 -2.42 8.81 -38.66 -0.34 -2.76 16 18 C 0.42 6.21 7.33 -155.71 -1.14 5.07 16 19 N -0.61 -7.17 3.38 -189.69 -0.64 -7.81 16 20 C 0.09 0.78 10.51 59.85 0.63 1.41 16 21 C 0.10 0.92 10.57 59.85 0.63 1.56 16 22 N -0.54 -8.30 8.87 -10.28 -0.09 -8.39 16 23 C 0.18 2.76 6.62 -84.89 -0.56 2.20 16 24 C -0.12 -1.54 9.99 -39.43 -0.39 -1.94 16 25 C -0.09 -1.03 9.94 -39.95 -0.40 -1.43 16 26 C -0.15 -1.90 9.96 -39.88 -0.40 -2.30 16 27 C -0.08 -1.24 9.31 -39.63 -0.37 -1.61 16 28 C -0.11 -1.92 5.90 -104.71 -0.62 -2.54 16 29 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 30 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.16 2.30 5.54 -52.49 -0.29 2.01 16 36 H 0.08 0.84 5.41 -51.93 -0.28 0.56 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 41 H 0.08 0.84 7.19 -51.93 -0.37 0.47 16 42 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.16 2.83 5.16 -52.49 -0.27 2.56 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -30.04 365.68 -9.81 -39.86 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.96 Total: 4.54 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.65 Total: -5.93 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.11 Total: -39.87 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.58 Total: -19.51 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.04 -9.81 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187943761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.006 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds