Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.08999 * 109.47022 * 54.99821 * 3 2 1 5 5 C 1.50703 * 109.46863 * 174.99649 * 3 2 1 6 6 H 1.07998 * 119.99489 * 119.99842 * 5 3 2 7 7 C 1.37875 * 120.00105 * 299.99760 * 5 3 2 8 8 N 1.31514 * 120.00138 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99912 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46920 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46751 * 120.00427 * 9 7 5 12 12 H 1.48499 * 109.47370 * 240.00269 * 9 7 5 13 13 O 1.45192 * 109.46898 * 294.99734 * 3 2 1 14 14 C 1.34709 * 117.00259 * 90.00340 * 13 3 2 15 15 O 1.21461 * 119.99979 * 359.97438 * 14 13 3 16 16 C 1.47824 * 120.00300 * 179.97438 * 14 13 3 17 17 C 1.38743 * 121.34537 * 354.63254 * 16 14 13 18 18 C 1.40188 * 119.42249 * 180.02562 * 17 16 14 19 19 N 1.38733 * 118.82519 * 179.97438 * 18 17 16 20 20 C 1.46498 * 120.00321 * 10.60773 * 19 18 17 21 21 C 1.46503 * 119.99511 * 190.59656 * 19 18 17 22 22 N 1.31418 * 122.33693 * 359.43281 * 18 17 16 23 23 C 1.33597 * 122.32128 * 0.88689 * 22 18 17 24 24 C 1.40626 * 121.07342 * 179.14455 * 23 22 18 25 25 C 1.36143 * 119.72498 * 179.97438 * 24 23 22 26 26 C 1.39275 * 121.07562 * 0.02562 * 25 24 23 27 27 C 1.36351 * 120.80373 * 359.95756 * 26 25 24 28 28 C 1.39913 * 119.59186 * 0.29330 * 27 26 25 29 29 H 1.09006 * 109.47072 * 60.00484 * 1 2 3 30 30 H 1.09007 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47708 * 300.00170 * 1 2 3 32 32 H 1.09003 * 109.47388 * 239.99531 * 2 1 3 33 33 H 1.09006 * 109.46869 * 120.00030 * 2 1 3 34 34 H 0.97003 * 120.00044 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.28411 * 0.03149 * 17 16 14 36 36 H 1.08994 * 109.47085 * 5.57576 * 20 19 18 37 37 H 1.08999 * 109.47179 * 125.58164 * 20 19 18 38 38 H 1.09000 * 109.46628 * 245.58013 * 20 19 18 39 39 H 1.09002 * 109.47008 * 90.00646 * 21 19 18 40 40 H 1.08993 * 109.47018 * 210.00433 * 21 19 18 41 41 H 1.08996 * 109.47740 * 330.00850 * 21 19 18 42 42 H 1.07998 * 120.14250 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.45881 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.59830 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.20575 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8801 1.3813 10 1 6.5987 1.5452 0.1938 11 1 6.3998 1.6158 2.6094 12 1 6.4961 -0.5189 1.4629 13 8 1.6558 2.0916 -1.2407 14 6 0.4685 2.7276 -1.2561 15 8 -0.2272 2.7393 -0.2605 16 6 0.0121 3.4114 -2.4847 17 6 0.8293 3.5104 -3.6015 18 6 0.3556 4.1683 -4.7452 19 7 1.1833 4.2606 -5.8548 20 6 2.4251 3.4852 -5.9089 21 6 0.8153 5.1333 -6.9725 22 7 -0.8483 4.6916 -4.8073 23 6 -1.6997 4.6487 -3.7786 24 6 -2.9757 5.2329 -3.8677 25 6 -3.8216 5.1726 -2.8027 26 6 -3.4449 4.5404 -1.6203 27 6 -2.2158 3.9628 -1.4983 28 6 -1.3200 4.0113 -2.5719 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0610 2.9500 35 1 1.8215 3.0843 -3.5898 36 1 2.4800 2.8262 -5.0425 37 1 2.4415 2.8886 -6.8209 38 1 3.2778 4.1642 -5.9035 39 1 1.2292 6.1282 -6.8082 40 1 1.2135 4.7228 -7.9003 41 1 -0.2706 5.1984 -7.0405 42 1 -3.2835 5.7274 -4.7772 43 1 -4.8005 5.6231 -2.8757 44 1 -4.1348 4.5069 -0.7901 45 1 -1.9339 3.4747 -0.5771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187943761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = -27.281876 kcal Electronic energy + Delta-G solvation = -28081.392145 eV Core-core repulsion = 24256.948821 eV Total energy + Delta-G solvation = -3824.443324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08937 -41.01598 -39.12657 -37.74616 -36.38143 -35.56538 -34.43172 -33.32769 -31.34420 -30.90876 -29.49424 -29.01157 -26.84373 -25.71609 -24.99179 -23.99988 -23.09480 -22.22374 -21.36516 -19.29052 -18.88700 -18.83015 -18.08795 -17.87590 -17.21921 -16.95378 -16.35394 -16.32827 -15.99121 -15.66795 -15.32595 -15.07641 -14.88296 -14.81469 -14.55007 -14.23446 -13.98457 -13.42996 -13.35248 -13.33360 -13.15530 -13.05746 -12.87768 -12.84898 -12.80928 -12.59070 -12.56827 -12.33659 -12.13229 -11.78405 -11.58285 -11.51709 -11.40546 -10.86890 -10.57556 -10.50399 -10.39066 -9.47413 -8.46329 -8.28535 -6.45298 -1.00151 -0.10064 0.62491 1.41774 1.42378 1.54961 1.60208 1.71301 1.89607 2.04243 2.38727 3.01616 3.11018 3.26250 3.51331 3.59443 3.75267 3.99616 4.11034 4.26439 4.30536 4.34224 4.36132 4.38592 4.48304 4.50366 4.56864 4.64163 4.70087 4.80422 4.81174 4.88296 4.96587 5.03734 5.05824 5.11773 5.17474 5.27563 5.37044 5.47546 5.52463 5.58134 5.63700 5.82862 5.91811 6.00699 6.07077 6.22363 6.56893 6.84176 6.99269 7.25289 8.78512 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003894 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.687102 B = 7188.962022 C = 8966.597927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.351 6.351 14 C 0.498 3.502 15 O -0.516 6.516 16 C -0.049 4.049 17 C -0.143 4.143 18 C 0.412 3.588 19 N -0.611 5.611 20 C 0.079 3.921 21 C 0.097 3.903 22 N -0.539 5.539 23 C 0.159 3.841 24 C -0.118 4.118 25 C -0.077 4.077 26 C -0.132 4.132 27 C -0.111 4.111 28 C -0.130 4.130 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.155 0.845 43 H 0.169 0.831 44 H 0.149 0.851 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 8.209 -16.845 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.197 1.197 13 O -0.267 6.267 14 C 0.343 3.657 15 O -0.408 6.408 16 C -0.058 4.058 17 C -0.166 4.166 18 C 0.163 3.837 19 N -0.326 5.326 20 C -0.063 4.063 21 C -0.045 4.045 22 N -0.261 5.261 23 C 0.038 3.962 24 C -0.137 4.137 25 C -0.097 4.097 26 C -0.151 4.151 27 C -0.129 4.129 28 C -0.134 4.134 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.180 0.820 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.173 0.827 43 H 0.186 0.814 44 H 0.167 0.833 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.732 8.501 -17.226 21.101 hybrid contribution 1.269 -0.701 1.560 2.129 sum -7.464 7.801 -15.666 19.026 Atomic orbital electron populations 1.21724 0.96431 1.00666 0.99986 1.21882 0.94314 0.97962 1.02557 1.20502 0.94810 0.89265 0.78092 0.97114 1.21324 0.90160 1.40069 1.07038 0.91375 1.25766 1.04112 0.93824 0.94320 1.70011 1.37368 1.37843 1.09857 0.85177 0.77795 0.78316 0.78395 1.18646 1.20341 1.19674 1.86510 1.34412 1.62651 1.43141 1.21214 0.80312 0.76468 0.87670 1.90632 1.55040 1.58948 1.36134 1.20517 0.94860 0.98551 0.91849 1.22345 1.01894 1.00711 0.91610 1.18356 0.88117 0.90340 0.86896 1.46529 1.21877 1.47828 1.16329 1.22078 0.84175 0.95989 1.04013 1.21714 1.02138 0.93012 0.87676 1.67039 1.02463 1.26330 1.30279 1.18719 0.94879 0.95560 0.87009 1.20942 0.90679 1.00970 1.01089 1.21313 1.00621 0.96301 0.91433 1.21274 0.95897 0.98369 0.99521 1.21683 0.94184 0.98588 0.98473 1.19556 0.93100 1.03314 0.97435 0.95023 0.91958 0.94160 0.93456 0.89205 0.91999 0.82029 0.90895 0.89428 0.90580 0.92887 0.89023 0.90977 0.82689 0.81403 0.83320 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.56 71.98 0.62 -5.16 16 2 C -0.13 -6.46 5.49 30.59 0.17 -6.29 16 3 C 0.23 12.19 2.25 29.85 0.07 12.26 16 4 H 0.01 0.67 7.16 -2.39 -0.02 0.65 16 5 C -0.55 -30.52 8.90 25.60 0.23 -30.29 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.16 16 9 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 O -0.35 -16.96 9.19 -56.19 -0.52 -17.47 16 14 C 0.50 22.27 6.35 70.36 0.45 22.71 16 15 O -0.52 -24.68 10.89 19.96 0.22 -24.46 16 16 C -0.05 -1.86 6.08 -18.51 -0.11 -1.98 16 17 C -0.14 -4.63 8.81 22.86 0.20 -4.43 16 18 C 0.41 11.91 7.33 133.70 0.98 12.89 16 19 N -0.61 -13.26 3.38 -754.05 -2.55 -15.81 16 20 C 0.08 1.30 10.51 127.77 1.34 2.65 16 21 C 0.10 1.56 10.57 127.77 1.35 2.91 16 22 N -0.54 -16.06 8.87 -186.45 -1.65 -17.72 16 23 C 0.16 4.88 6.62 40.30 0.27 5.15 16 24 C -0.12 -2.74 9.99 22.36 0.22 -2.52 16 25 C -0.08 -1.54 9.94 22.03 0.22 -1.32 16 26 C -0.13 -3.24 9.96 22.08 0.22 -3.02 16 27 C -0.11 -3.69 9.31 22.24 0.21 -3.48 16 28 C -0.13 -4.56 5.90 -19.92 -0.12 -4.68 16 29 H 0.03 1.36 6.06 -2.38 -0.01 1.35 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.04 1.86 7.79 -2.39 -0.02 1.85 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 4.88 5.95 -2.38 -0.01 4.87 16 34 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.16 4.91 5.54 -2.91 -0.02 4.90 16 36 H 0.07 1.39 5.41 -2.39 -0.01 1.38 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 41 H 0.07 1.33 7.19 -2.39 -0.02 1.32 16 42 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.14 5.14 5.16 -2.91 -0.02 5.13 16 Total: -1.00 -68.34 365.68 5.54 -62.80 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 1.02 Total: 22.78 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.76 Total: -3.07 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.96 Total: -84.68 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.30 Total: -41.93 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.34 5.54 -62.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187943761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.521 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds