Wall clock time and date at job start Tue Mar 31 2020 15:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47131 * 55.00069 * 3 2 1 5 5 C 1.50698 * 109.47114 * 175.00016 * 3 2 1 6 6 H 1.08005 * 120.00175 * 119.99936 * 5 3 2 7 7 C 1.37877 * 120.00046 * 300.00292 * 5 3 2 8 8 N 1.31513 * 120.00038 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46959 * 89.99494 * 9 7 5 11 11 H 1.48501 * 109.46829 * 209.99407 * 9 7 5 12 12 H 1.48495 * 109.46956 * 329.99929 * 9 7 5 13 13 O 1.45201 * 109.47031 * 294.99677 * 3 2 1 14 14 C 1.34762 * 116.99655 * 90.00409 * 13 3 2 15 15 O 1.21529 * 119.99916 * 359.97438 * 14 13 3 16 16 C 1.47261 * 119.99872 * 180.02562 * 14 13 3 17 17 C 1.41391 * 126.42480 * 89.68153 * 16 14 13 18 18 C 1.50699 * 125.96625 * 0.04294 * 17 16 14 19 19 N 1.30458 * 108.05748 * 179.87550 * 17 16 14 20 20 N 1.39927 * 108.93688 * 0.39369 * 19 17 16 21 21 C 1.40158 * 125.75969 * 179.75239 * 20 19 17 22 22 C 1.38845 * 120.06861 * 41.89517 * 21 20 19 23 23 C 1.38112 * 119.93198 * 179.70459 * 22 21 20 24 24 C 1.38286 * 120.06559 * 0.57059 * 23 22 21 25 25 C 1.38277 * 120.13544 * 359.72715 * 24 23 22 26 26 C 1.38122 * 120.06865 * 359.97438 * 25 24 23 27 27 C 1.34501 * 108.47878 * 359.74287 * 20 19 17 28 28 C 1.50700 * 126.31317 * 180.02562 * 27 20 19 29 29 H 1.09001 * 109.46649 * 59.99883 * 1 2 3 30 30 H 1.08995 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46748 * 300.00436 * 1 2 3 32 32 H 1.09004 * 109.47266 * 240.00211 * 2 1 3 33 33 H 1.08997 * 109.47168 * 119.99596 * 2 1 3 34 34 H 0.97003 * 120.00325 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47340 * 89.99834 * 18 17 16 36 36 H 1.09005 * 109.46554 * 209.99234 * 18 17 16 37 37 H 1.08996 * 109.47457 * 329.99382 * 18 17 16 38 38 H 1.08004 * 120.03287 * 359.97438 * 22 21 20 39 39 H 1.08001 * 119.97027 * 180.29618 * 23 22 21 40 40 H 1.08006 * 119.93203 * 179.74563 * 24 23 22 41 41 H 1.08005 * 119.96968 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.03083 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47582 * 275.09550 * 28 27 20 44 44 H 1.09001 * 109.47354 * 35.09577 * 28 27 20 45 45 H 1.08999 * 109.47044 * 155.09260 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8813 1.3818 10 1 6.4416 2.1142 2.0849 11 1 6.4396 -0.3098 2.1550 12 1 6.6136 0.8417 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4681 2.7280 -1.2560 15 8 -0.2279 2.7396 -0.2598 16 6 0.0129 3.4082 -2.4802 17 6 -0.7500 2.8363 -3.5243 18 6 -1.2455 1.4143 -3.5819 19 7 -0.9530 3.7558 -4.4272 20 7 -0.3321 4.9405 -4.0165 21 6 -0.3247 6.1497 -4.7252 22 6 -1.4806 6.5957 -5.3519 23 6 -1.4719 7.7907 -6.0444 24 6 -0.3104 8.5369 -6.1237 25 6 0.8440 8.0923 -5.5058 26 6 0.8399 6.9011 -4.8067 27 6 0.2565 4.7231 -2.8268 28 6 1.0371 5.7287 -2.0203 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 -2.2300 1.3535 -3.1181 36 1 -1.3135 1.0951 -4.6219 37 1 -0.5514 0.7657 -3.0474 38 1 -2.3868 6.0109 -5.2943 39 1 -2.3719 8.1406 -6.5281 40 1 -0.3049 9.4691 -6.6693 41 1 1.7498 8.6771 -5.5699 42 1 1.7417 6.5547 -4.3240 43 1 2.0701 5.7496 -2.3673 44 1 0.5927 6.7164 -2.1426 45 1 1.0131 5.4474 -0.9675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187965232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:10 Heat of formation + Delta-G solvation = 7.426876 kcal Electronic energy + Delta-G solvation = -27867.390849 eV Core-core repulsion = 24044.452609 eV Total energy + Delta-G solvation = -3822.938240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76888 -39.49816 -38.95981 -35.64562 -34.39407 -33.45595 -32.44277 -31.36603 -31.20099 -30.47120 -27.99828 -27.43668 -27.02560 -23.90600 -23.10155 -22.91450 -21.86368 -20.13530 -19.78027 -19.16078 -17.87847 -16.96970 -16.58364 -16.44463 -15.91224 -15.37452 -15.03294 -14.85466 -14.53857 -14.36780 -13.92294 -13.83928 -13.43790 -13.24552 -13.06914 -12.94372 -12.85386 -12.47610 -12.41760 -12.18099 -11.96712 -11.83850 -11.48041 -11.42975 -11.31894 -11.16005 -10.93648 -10.74482 -10.63274 -10.27852 -9.95189 -9.76322 -9.62929 -9.37706 -9.36282 -8.91429 -8.77676 -8.44723 -8.29635 -6.17464 -4.24349 0.62406 0.96339 1.80191 2.18451 2.47591 2.91177 3.24445 3.30425 3.34238 3.34965 3.86633 4.33144 4.42137 4.44552 4.54270 4.65060 4.75283 4.86062 4.98635 5.12855 5.14398 5.29466 5.31230 5.41387 5.59141 5.67021 5.72593 5.73774 5.84498 5.91829 5.94866 5.99873 6.07743 6.10618 6.26915 6.32639 6.40051 6.45668 6.56855 6.90320 6.99342 7.02513 7.19927 7.27516 7.57328 7.63012 7.75598 7.95772 8.17582 8.66926 8.92458 9.40854 10.89246 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003190 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.690723 B = 8775.599274 C =10007.480760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.537 3.463 15 O -0.506 6.506 16 C -0.243 4.243 17 C 0.127 3.873 18 C -0.080 4.080 19 N -0.293 5.293 20 N -0.320 5.320 21 C 0.154 3.846 22 C -0.107 4.107 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.100 4.100 26 C -0.124 4.124 27 C 0.135 3.865 28 C -0.101 4.101 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 13.282 -14.694 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.263 6.263 14 C 0.378 3.622 15 O -0.396 6.396 16 C -0.255 4.255 17 C -0.041 4.041 18 C -0.138 4.138 19 N -0.113 5.113 20 N -0.095 5.095 21 C 0.063 3.937 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.139 4.139 25 C -0.119 4.119 26 C -0.144 4.144 27 C 0.008 3.992 28 C -0.159 4.159 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.334 13.472 -15.337 22.049 hybrid contribution 1.231 -0.309 0.993 1.612 sum -7.103 13.162 -14.344 20.723 Atomic orbital electron populations 1.21900 0.98357 0.99064 1.00908 1.22017 0.92672 0.99314 1.03374 1.20706 0.95000 0.88873 0.78697 0.93511 1.21037 0.89679 1.38920 1.06171 0.91377 1.24874 0.99131 0.94789 0.95098 1.69889 1.35336 1.37850 1.09453 0.86308 0.84029 0.77688 0.78333 1.20432 1.20952 1.19611 1.86650 1.33583 1.62156 1.43890 1.19827 0.80618 0.76042 0.85710 1.90799 1.55561 1.58341 1.34859 1.19335 1.12778 0.93693 0.99730 1.22428 0.95115 0.96537 0.89980 1.20357 1.02128 0.87575 1.03782 1.77194 1.20987 0.90276 1.22802 1.45282 1.41413 1.08304 1.14481 1.17454 0.94905 0.83993 0.97362 1.21077 0.97060 0.96506 0.98006 1.21080 0.98735 0.93935 0.98509 1.21280 0.92871 1.00174 0.99621 1.21038 0.98836 0.95355 0.96679 1.21194 0.96549 0.95977 1.00723 1.21390 0.95605 0.95317 0.86855 1.20698 0.99140 0.95934 1.00141 0.94757 0.94734 0.92796 0.93933 0.87343 0.92401 0.89753 0.90149 0.89544 0.84928 0.85067 0.85356 0.84862 0.84811 0.88993 0.90248 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.83 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.81 2.25 -27.88 -0.06 5.75 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.43 8.90 -34.44 -0.31 -14.74 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.82 11.29 55.43 0.63 -24.20 16 9 Si 0.91 20.85 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 O -0.35 -8.42 9.82 -40.66 -0.40 -8.82 16 14 C 0.54 11.78 5.49 34.40 0.19 11.97 16 15 O -0.51 -12.13 14.29 -19.29 -0.28 -12.40 16 16 C -0.24 -4.57 6.00 -105.07 -0.63 -5.21 16 17 C 0.13 2.16 7.27 -81.98 -0.60 1.56 16 18 C -0.08 -1.11 10.28 36.00 0.37 -0.74 16 19 N -0.29 -4.85 12.32 33.92 0.42 -4.43 16 20 N -0.32 -4.89 3.67 -6.50 -0.02 -4.92 16 21 C 0.15 1.91 6.10 -83.60 -0.51 1.40 16 22 C -0.11 -1.14 9.83 -39.40 -0.39 -1.53 16 23 C -0.10 -0.83 10.04 -39.61 -0.40 -1.22 16 24 C -0.12 -0.85 10.04 -39.55 -0.40 -1.25 16 25 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 26 C -0.12 -1.26 8.54 -39.40 -0.34 -1.59 16 27 C 0.13 2.18 6.82 -81.46 -0.56 1.63 16 28 C -0.10 -1.31 8.62 36.01 0.31 -1.00 16 29 H 0.03 0.71 5.23 -51.93 -0.27 0.44 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.29 7.18 -51.93 -0.37 0.91 16 38 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.13 1.28 6.61 -52.49 -0.35 0.93 16 43 H 0.09 1.04 7.59 -51.93 -0.39 0.65 16 44 H 0.08 0.83 7.50 -51.93 -0.39 0.45 16 45 H 0.09 1.35 7.84 -51.93 -0.41 0.95 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -32.35 375.59 -8.84 -41.19 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.19 Total: 2.95 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.63 Total: -10.86 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 1.02 Total: -33.54 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.67 Total: -21.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.35 -8.84 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187965232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds