Wall clock time and date at job start Tue Mar 31 2020 15:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47131 * 55.00069 * 3 2 1 5 5 C 1.50698 * 109.47114 * 175.00016 * 3 2 1 6 6 H 1.08005 * 120.00175 * 119.99936 * 5 3 2 7 7 C 1.37877 * 120.00046 * 300.00292 * 5 3 2 8 8 N 1.31513 * 120.00038 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46959 * 89.99494 * 9 7 5 11 11 H 1.48501 * 109.46829 * 209.99407 * 9 7 5 12 12 H 1.48495 * 109.46956 * 329.99929 * 9 7 5 13 13 O 1.45201 * 109.47031 * 294.99677 * 3 2 1 14 14 C 1.34762 * 116.99655 * 90.00409 * 13 3 2 15 15 O 1.21529 * 119.99916 * 359.97438 * 14 13 3 16 16 C 1.47261 * 119.99872 * 180.02562 * 14 13 3 17 17 C 1.41391 * 126.42480 * 89.68153 * 16 14 13 18 18 C 1.50699 * 125.96625 * 0.04294 * 17 16 14 19 19 N 1.30458 * 108.05748 * 179.87550 * 17 16 14 20 20 N 1.39927 * 108.93688 * 0.39369 * 19 17 16 21 21 C 1.40158 * 125.75969 * 179.75239 * 20 19 17 22 22 C 1.38845 * 120.06861 * 41.89517 * 21 20 19 23 23 C 1.38112 * 119.93198 * 179.70459 * 22 21 20 24 24 C 1.38286 * 120.06559 * 0.57059 * 23 22 21 25 25 C 1.38277 * 120.13544 * 359.72715 * 24 23 22 26 26 C 1.38122 * 120.06865 * 359.97438 * 25 24 23 27 27 C 1.34501 * 108.47878 * 359.74287 * 20 19 17 28 28 C 1.50700 * 126.31317 * 180.02562 * 27 20 19 29 29 H 1.09001 * 109.46649 * 59.99883 * 1 2 3 30 30 H 1.08995 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46748 * 300.00436 * 1 2 3 32 32 H 1.09004 * 109.47266 * 240.00211 * 2 1 3 33 33 H 1.08997 * 109.47168 * 119.99596 * 2 1 3 34 34 H 0.97003 * 120.00325 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47340 * 89.99834 * 18 17 16 36 36 H 1.09005 * 109.46554 * 209.99234 * 18 17 16 37 37 H 1.08996 * 109.47457 * 329.99382 * 18 17 16 38 38 H 1.08004 * 120.03287 * 359.97438 * 22 21 20 39 39 H 1.08001 * 119.97027 * 180.29618 * 23 22 21 40 40 H 1.08006 * 119.93203 * 179.74563 * 24 23 22 41 41 H 1.08005 * 119.96968 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.03083 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47582 * 275.09550 * 28 27 20 44 44 H 1.09001 * 109.47354 * 35.09577 * 28 27 20 45 45 H 1.08999 * 109.47044 * 155.09260 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8813 1.3818 10 1 6.4416 2.1142 2.0849 11 1 6.4396 -0.3098 2.1550 12 1 6.6136 0.8417 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4681 2.7280 -1.2560 15 8 -0.2279 2.7396 -0.2598 16 6 0.0129 3.4082 -2.4802 17 6 -0.7500 2.8363 -3.5243 18 6 -1.2455 1.4143 -3.5819 19 7 -0.9530 3.7558 -4.4272 20 7 -0.3321 4.9405 -4.0165 21 6 -0.3247 6.1497 -4.7252 22 6 -1.4806 6.5957 -5.3519 23 6 -1.4719 7.7907 -6.0444 24 6 -0.3104 8.5369 -6.1237 25 6 0.8440 8.0923 -5.5058 26 6 0.8399 6.9011 -4.8067 27 6 0.2565 4.7231 -2.8268 28 6 1.0371 5.7287 -2.0203 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 -2.2300 1.3535 -3.1181 36 1 -1.3135 1.0951 -4.6219 37 1 -0.5514 0.7657 -3.0474 38 1 -2.3868 6.0109 -5.2943 39 1 -2.3719 8.1406 -6.5281 40 1 -0.3049 9.4691 -6.6693 41 1 1.7498 8.6771 -5.5699 42 1 1.7417 6.5547 -4.3240 43 1 2.0701 5.7496 -2.3673 44 1 0.5927 6.7164 -2.1426 45 1 1.0131 5.4474 -0.9675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187965232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:09 Heat of formation + Delta-G solvation = -9.011879 kcal Electronic energy + Delta-G solvation = -27868.103687 eV Core-core repulsion = 24044.452609 eV Total energy + Delta-G solvation = -3823.651077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.97870 -41.09997 -39.94751 -37.54982 -35.50194 -35.42574 -33.66648 -33.21768 -31.97613 -31.43857 -29.53830 -28.85361 -28.38409 -25.54716 -24.57982 -23.71874 -23.09857 -21.90903 -20.86896 -20.79836 -19.17479 -18.57947 -18.41099 -17.39547 -17.11418 -16.95692 -16.75579 -16.31246 -15.71929 -15.32678 -15.02518 -14.86432 -14.73799 -14.62499 -14.46932 -14.25543 -13.94937 -13.87396 -13.59263 -13.38383 -13.31591 -13.28089 -13.17630 -13.09254 -12.78558 -12.58521 -12.51950 -12.26875 -12.13603 -12.00592 -11.69722 -11.48053 -11.35081 -10.92058 -10.80560 -10.51939 -10.09305 -10.04349 -9.37640 -8.25681 -6.42482 -0.24757 0.29580 0.70453 1.06411 1.15786 1.18925 1.42879 1.44406 1.56231 2.15493 2.45256 2.66082 3.03739 3.29030 3.38315 3.67399 3.86283 3.89523 4.08822 4.12192 4.19092 4.38131 4.38799 4.40195 4.40557 4.42307 4.51016 4.56522 4.59022 4.62003 4.72826 4.80253 4.85373 4.87833 4.98341 5.11751 5.19294 5.25252 5.32846 5.34105 5.42017 5.46796 5.52550 5.68381 5.69968 5.95826 6.03699 6.11537 6.34314 6.61188 6.97838 7.28714 8.81077 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003190 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.690723 B = 8775.599274 C =10007.480760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.271 1.271 11 H -0.275 1.275 12 H -0.265 1.265 13 O -0.356 6.356 14 C 0.546 3.454 15 O -0.533 6.533 16 C -0.289 4.289 17 C 0.119 3.881 18 C -0.079 4.079 19 N -0.304 5.304 20 N -0.310 5.310 21 C 0.110 3.890 22 C -0.119 4.119 23 C -0.101 4.101 24 C -0.108 4.108 25 C -0.097 4.097 26 C -0.130 4.130 27 C 0.142 3.858 28 C -0.099 4.099 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.271 0.729 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 15.435 -16.845 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.196 1.196 11 H -0.200 1.200 12 H -0.189 1.189 13 O -0.272 6.272 14 C 0.390 3.610 15 O -0.423 6.423 16 C -0.301 4.301 17 C -0.047 4.047 18 C -0.137 4.137 19 N -0.124 5.124 20 N -0.084 5.084 21 C 0.021 3.979 22 C -0.139 4.139 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.151 4.151 27 C 0.013 3.987 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.696 15.644 -17.524 24.720 hybrid contribution 0.972 -0.775 1.550 1.986 sum -6.725 14.869 -15.974 22.836 Atomic orbital electron populations 1.21765 0.96220 1.00802 1.00257 1.21867 0.94566 0.97936 1.02378 1.20451 0.94630 0.89433 0.78383 0.97349 1.21295 0.90387 1.40074 1.06875 0.91788 1.25772 1.04119 0.93838 0.94326 1.70010 1.37402 1.37856 1.09821 0.85236 0.77805 0.78094 0.78612 1.19612 1.20032 1.18906 1.86643 1.35126 1.62704 1.42706 1.20246 0.79328 0.75017 0.86450 1.90767 1.55974 1.59253 1.36336 1.19268 1.15885 0.95203 0.99777 1.22789 0.94848 0.97732 0.89374 1.20439 1.02191 0.85858 1.05227 1.77131 1.21652 0.90779 1.22847 1.45504 1.40019 1.08836 1.14047 1.17900 0.96746 0.83702 0.99564 1.21166 0.96259 0.97761 0.98733 1.21427 1.00372 0.92665 0.97492 1.21754 0.91872 1.00799 0.98135 1.21436 1.00373 0.94361 0.95319 1.21354 0.95784 0.96671 1.01243 1.21753 0.94863 0.94902 0.87144 1.20803 1.00018 0.96426 0.98427 0.94217 0.91685 0.94613 0.93578 0.89404 0.91997 0.88494 0.87855 0.90863 0.86008 0.82399 0.81820 0.81917 0.84737 0.87184 0.87471 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.56 71.98 0.62 -5.32 16 2 C -0.13 -6.62 5.49 30.60 0.17 -6.45 16 3 C 0.22 12.44 2.25 29.85 0.07 12.50 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -31.41 8.90 25.60 0.23 -31.18 16 6 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.22 11.29 21.45 0.24 -51.98 16 9 Si 0.98 42.83 29.54 68.60 2.03 44.86 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 O -0.36 -18.11 9.82 -56.73 -0.56 -18.67 16 14 C 0.55 25.22 5.49 70.19 0.39 25.61 16 15 O -0.53 -26.99 14.29 19.74 0.28 -26.70 16 16 C -0.29 -11.30 6.00 -20.15 -0.12 -11.42 16 17 C 0.12 4.17 7.27 43.54 0.32 4.48 16 18 C -0.08 -2.22 10.28 71.24 0.73 -1.49 16 19 N -0.30 -10.19 12.32 -46.61 -0.57 -10.76 16 20 N -0.31 -9.53 3.67 -174.47 -0.64 -10.17 16 21 C 0.11 2.64 6.10 38.10 0.23 2.87 16 22 C -0.12 -2.41 9.83 22.39 0.22 -2.19 16 23 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 24 C -0.11 -1.05 10.04 22.29 0.22 -0.82 16 25 C -0.10 -1.13 10.04 22.25 0.22 -0.91 16 26 C -0.13 -2.38 8.54 22.39 0.19 -2.19 16 27 C 0.14 4.71 6.82 42.13 0.29 4.99 16 28 C -0.10 -2.57 8.62 71.24 0.61 -1.96 16 29 H 0.04 1.70 5.23 -2.39 -0.01 1.68 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.03 1.69 7.79 -2.39 -0.02 1.67 16 32 H 0.05 2.26 8.14 -2.38 -0.02 2.25 16 33 H 0.09 4.87 5.95 -2.39 -0.01 4.85 16 34 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.07 2.24 7.18 -2.39 -0.02 2.22 16 38 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.13 2.36 6.61 -2.91 -0.02 2.34 16 43 H 0.11 2.44 7.59 -2.39 -0.02 2.43 16 44 H 0.11 2.14 7.50 -2.39 -0.02 2.13 16 45 H 0.07 2.25 7.84 -2.39 -0.02 2.23 16 Total: -1.00 -73.54 375.59 6.84 -66.70 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.00 Total: 19.74 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.06 Total: -13.02 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -0.97 Total: -72.91 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.27 Total: -45.37 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -73.54 6.84 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187965232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.689 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds