Wall clock time and date at job start Tue Mar 31 2020 15:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47443 * 2 1 4 4 H 1.08994 * 109.47125 * 54.99802 * 3 2 1 5 5 C 1.50696 * 109.47398 * 175.00423 * 3 2 1 6 6 H 1.07998 * 120.00753 * 119.99883 * 5 3 2 7 7 C 1.37881 * 120.00009 * 299.99750 * 5 3 2 8 8 N 1.31520 * 119.99860 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00370 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46654 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47077 * 120.00052 * 9 7 5 12 12 H 1.48499 * 109.47051 * 240.00032 * 9 7 5 13 13 O 1.45203 * 109.46691 * 294.99840 * 3 2 1 14 14 C 1.34823 * 116.99703 * 90.00342 * 13 3 2 15 15 O 1.21548 * 119.99769 * 359.97438 * 14 13 3 16 16 C 1.47036 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.38268 * 126.77883 * 179.70958 * 16 14 13 18 18 C 1.40642 * 105.29636 * 180.25812 * 17 16 14 19 19 C 1.48455 * 126.20321 * 180.02562 * 18 17 16 20 20 C 1.39331 * 120.11661 * 5.01885 * 19 18 17 21 21 C 1.38002 * 119.87671 * 180.02562 * 20 19 18 22 22 C 1.38342 * 120.12313 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.88214 * 179.97438 * 22 21 20 24 24 C 1.38295 * 120.23564 * 359.97438 * 22 21 20 25 25 C 1.50700 * 119.94195 * 180.02562 * 24 22 21 26 26 C 1.38050 * 120.11863 * 359.75709 * 24 22 21 27 27 N 1.31648 * 107.59290 * 359.97438 * 18 17 16 28 28 N 1.28414 * 110.81438 * 0.02562 * 27 18 17 29 29 H 0.97001 * 125.07504 * 180.02562 * 28 27 18 30 30 H 1.09000 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47092 * 299.99920 * 1 2 3 32 32 H 1.09007 * 109.47227 * 59.99844 * 1 2 3 33 33 H 1.09002 * 109.47092 * 240.00080 * 2 1 3 34 34 H 1.09001 * 109.47611 * 120.00372 * 2 1 3 35 35 H 0.96994 * 120.00037 * 179.97438 * 8 7 5 36 36 H 1.08002 * 127.34889 * 0.25727 * 17 16 14 37 37 H 1.07999 * 120.06231 * 359.97438 * 20 19 18 38 38 H 1.08005 * 119.93844 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46542 * 90.00385 * 23 22 21 40 40 H 1.09001 * 109.47251 * 210.00542 * 23 22 21 41 41 H 1.09000 * 109.47148 * 330.00863 * 23 22 21 42 42 H 1.09005 * 109.46623 * 89.99046 * 25 24 22 43 43 H 1.08988 * 109.47125 * 209.99482 * 25 24 22 44 44 H 1.08999 * 109.46984 * 329.99841 * 25 24 22 45 45 H 1.08001 * 120.06237 * 180.25799 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8812 1.3817 10 1 6.5987 1.5461 0.1940 11 1 6.3991 1.6166 2.6101 12 1 6.4970 -0.5176 1.4628 13 8 1.6559 2.0916 -1.2408 14 6 0.4675 2.7282 -1.2561 15 8 -0.2285 2.7399 -0.2597 16 6 0.0131 3.4074 -2.4784 17 6 -1.1748 4.0936 -2.6514 18 6 -1.1485 4.5516 -3.9809 19 6 -2.2049 5.3473 -4.6553 20 6 -3.3087 5.7974 -3.9340 21 6 -4.2881 6.5362 -4.5659 22 6 -4.1752 6.8306 -5.9130 23 6 -5.2482 7.6373 -6.5978 24 6 -3.0811 6.3871 -6.6333 25 6 -2.9645 6.7121 -8.1002 26 6 -2.0928 5.6521 -6.0098 27 7 -0.0167 4.1478 -4.5186 28 7 0.6791 3.4806 -3.6702 29 1 1.5479 3.0875 -3.8481 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8293 -0.0610 2.9499 36 1 -1.9560 4.2454 -1.9213 37 1 -3.3981 5.5679 -2.8824 38 1 -5.1440 6.8860 -4.0077 39 1 -5.0036 8.6973 -6.5315 40 1 -5.3106 7.3435 -7.6456 41 1 -6.2064 7.4544 -6.1114 42 1 -2.4331 7.6560 -8.2221 43 1 -2.4152 5.9180 -8.6057 44 1 -3.9609 6.7975 -8.5338 45 1 -1.2368 5.3098 -6.5723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188030282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:28 Heat of formation + Delta-G solvation = -25.132668 kcal Electronic energy + Delta-G solvation = -26678.754267 eV Core-core repulsion = 22854.404139 eV Total energy + Delta-G solvation = -3824.350127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.69851 -41.23968 -40.33245 -37.75881 -35.61455 -35.13141 -33.45891 -33.18983 -32.27856 -31.93084 -29.39423 -28.37609 -27.32930 -25.92516 -24.73408 -23.43726 -22.91448 -22.12418 -21.60086 -20.69531 -19.93181 -18.69462 -18.00759 -17.43957 -17.26127 -16.72836 -16.52305 -16.35498 -16.11093 -15.58504 -15.10232 -15.01779 -14.84456 -14.74665 -14.22261 -14.05419 -13.81634 -13.52156 -13.50105 -13.41264 -13.35906 -13.18622 -12.90228 -12.87251 -12.68174 -12.60560 -12.31138 -12.16259 -11.95212 -11.81728 -11.69128 -11.60022 -11.43396 -10.91520 -10.89190 -10.58240 -10.42449 -9.62473 -9.05593 -8.30722 -6.47471 -0.11151 0.04598 0.51206 1.39797 1.40845 1.50349 1.56108 1.57308 1.85355 1.86087 2.37176 2.94460 2.99430 3.20116 3.65620 3.70516 3.99883 4.07786 4.15072 4.18993 4.34126 4.36143 4.40859 4.45296 4.47267 4.53930 4.75285 4.78330 4.79455 4.92178 4.92906 5.03451 5.04945 5.09197 5.12481 5.16141 5.27655 5.28203 5.42900 5.46978 5.55623 5.58024 5.61974 5.78118 5.85736 5.86214 6.02592 6.12764 6.52615 6.70506 6.82542 7.22944 8.76216 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002200 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.291188 B =12725.615272 C =13252.334308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.013 0.987 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.272 1.272 13 O -0.358 6.358 14 C 0.527 3.473 15 O -0.518 6.518 16 C -0.022 4.022 17 C -0.137 4.137 18 C 0.060 3.940 19 C -0.029 4.029 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.087 4.087 23 C -0.117 4.117 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.104 4.104 27 N -0.256 5.256 28 N -0.349 5.349 29 H 0.463 0.537 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.182 0.818 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.776 12.017 -18.208 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.031 0.969 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.197 1.197 13 O -0.274 6.274 14 C 0.370 3.630 15 O -0.407 6.407 16 C -0.149 4.149 17 C -0.165 4.165 18 C -0.095 4.095 19 C -0.031 4.031 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.088 4.088 23 C -0.173 4.173 24 C -0.097 4.097 25 C -0.172 4.172 26 C -0.124 4.124 27 N -0.092 5.092 28 N -0.068 5.068 29 H 0.311 0.689 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.199 0.801 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.288 11.880 -18.636 26.317 hybrid contribution 1.186 -0.668 1.533 2.050 sum -13.102 11.212 -17.103 24.287 Atomic orbital electron populations 1.21737 0.96291 1.00791 1.00148 1.21891 0.94441 0.97895 1.02607 1.20507 0.94719 0.89313 0.77969 0.96887 1.21318 0.90223 1.40127 1.07020 0.91436 1.25773 1.04101 0.93892 0.94390 1.70005 1.37341 1.37748 1.09834 0.85171 0.77819 0.78290 0.78353 1.18860 1.20242 1.19727 1.86516 1.34480 1.62968 1.43465 1.19987 0.80414 0.76189 0.86394 1.90834 1.55891 1.59132 1.34796 1.20642 0.97307 1.09259 0.87673 1.22338 0.96913 0.99718 0.97515 1.20623 0.93920 1.02860 0.92056 1.17777 0.92812 0.98857 0.93646 1.21293 0.93094 0.97936 1.00579 1.21222 0.99382 0.98559 0.94486 1.20233 0.96232 0.98256 0.94065 1.20936 0.96056 0.99248 1.01035 1.19980 0.94047 0.98025 0.97617 1.20904 1.03788 1.02421 0.90065 1.21150 0.99222 0.98601 0.93388 1.73297 1.05863 1.10735 1.19313 1.43723 1.18692 1.38335 1.06072 0.68909 0.91904 0.94170 0.94705 0.93417 0.89236 0.91938 0.80079 0.84655 0.83380 0.90189 0.90091 0.90495 0.90377 0.91468 0.89513 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.56 71.98 0.62 -5.08 16 2 C -0.13 -6.39 5.49 30.59 0.17 -6.22 16 3 C 0.23 12.02 2.25 29.85 0.07 12.09 16 4 H 0.01 0.79 7.16 -2.39 -0.02 0.77 16 5 C -0.55 -30.24 8.90 25.60 0.23 -30.01 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -50.95 11.30 21.45 0.24 -50.71 16 9 Si 0.98 42.07 29.54 68.60 2.03 44.09 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 13 O -0.36 -16.52 9.82 -57.35 -0.56 -17.09 16 14 C 0.53 22.14 6.40 70.13 0.45 22.59 16 15 O -0.52 -24.07 14.10 19.68 0.28 -23.79 16 16 C -0.02 -0.76 7.20 40.70 0.29 -0.47 16 17 C -0.14 -4.09 10.18 22.86 0.23 -3.86 16 18 C 0.06 1.69 6.98 42.48 0.30 1.99 16 19 C -0.03 -0.71 5.88 -20.04 -0.12 -0.83 16 20 C -0.11 -2.22 9.58 22.48 0.22 -2.01 16 21 C -0.12 -1.94 9.68 22.24 0.22 -1.73 16 22 C -0.09 -1.35 5.88 -19.83 -0.12 -1.47 16 23 C -0.12 -1.05 9.60 71.24 0.68 -0.36 16 24 C -0.10 -1.69 5.88 -19.90 -0.12 -1.81 16 25 C -0.12 -1.35 9.60 71.24 0.68 -0.67 16 26 C -0.10 -2.29 9.34 22.48 0.21 -2.08 16 27 N -0.26 -7.42 11.83 -48.25 -0.57 -7.99 16 28 N -0.35 -10.27 6.92 -48.10 -0.33 -10.60 16 29 H 0.46 11.67 8.96 -220.02 -1.97 9.70 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 32 H 0.03 1.44 6.06 -2.38 -0.01 1.43 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 4.80 5.95 -2.39 -0.01 4.78 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.18 4.75 7.46 -2.91 -0.02 4.73 16 37 H 0.14 2.42 7.13 -2.91 -0.02 2.40 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.56 5.93 -2.39 -0.01 0.55 16 41 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 42 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.07 0.77 8.08 -2.39 -0.02 0.76 16 44 H 0.09 0.71 5.93 -2.39 -0.01 0.70 16 45 H 0.12 2.73 7.87 -2.91 -0.02 2.70 16 Total: -1.00 -65.54 374.66 4.59 -60.95 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.94 Total: 23.61 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.45 Total: -18.47 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -0.66 Total: -69.30 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.29 Total: -40.88 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.54 4.59 -60.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188030282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.817 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds