Wall clock time and date at job start Tue Mar 31 2020 15:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34810 * 116.99820 * 270.00393 * 13 3 2 15 15 O 1.21552 * 120.00311 * 359.97438 * 14 13 3 16 16 C 1.47038 * 120.00096 * 180.02562 * 14 13 3 17 17 C 1.38266 * 126.78369 * 179.71205 * 16 14 13 18 18 C 1.40652 * 105.29193 * 179.91480 * 17 16 14 19 19 C 1.48455 * 126.20053 * 180.16128 * 18 17 16 20 20 C 1.39333 * 120.11391 * 5.24319 * 19 18 17 21 21 C 1.38011 * 119.87417 * 180.02562 * 20 19 18 22 22 C 1.38335 * 120.12191 * 359.97438 * 21 20 19 23 23 C 1.50694 * 119.87997 * 180.02562 * 22 21 20 24 24 C 1.38298 * 120.23626 * 0.02562 * 22 21 20 25 25 C 1.50695 * 119.93692 * 180.02562 * 24 22 21 26 26 C 1.38042 * 120.11641 * 359.72243 * 24 22 21 27 27 N 1.31649 * 107.59533 * 0.34776 * 18 17 16 28 28 N 1.28414 * 110.81063 * 359.77739 * 27 18 17 29 29 H 0.97002 * 125.06982 * 180.02562 * 28 27 18 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.07988 * 127.34789 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.06607 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.93292 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47476 * 90.00375 * 23 22 21 40 40 H 1.09002 * 109.47399 * 209.99894 * 23 22 21 41 41 H 1.08996 * 109.47509 * 330.00052 * 23 22 21 42 42 H 1.09006 * 109.47375 * 90.00250 * 25 24 22 43 43 H 1.09004 * 109.47130 * 210.00248 * 25 24 22 44 44 H 1.08998 * 109.47484 * 329.99904 * 25 24 22 45 45 H 1.08009 * 120.05903 * 180.29794 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 8 1.6560 2.0916 1.2408 14 6 0.4677 2.7281 1.2561 15 8 -0.2281 2.7405 0.2595 16 6 0.0137 3.4084 2.4781 17 6 -1.1691 4.1040 2.6476 18 6 -1.1426 4.5623 3.9771 19 6 -2.1962 5.3633 4.6496 20 6 -3.3933 5.6371 3.9913 21 6 -4.3692 6.3827 4.6209 22 6 -4.1608 6.8574 5.9034 23 6 -5.2303 7.6705 6.5860 24 6 -2.9744 6.5886 6.5613 25 6 -2.7547 7.1086 7.9586 26 6 -1.9937 5.8394 5.9428 27 7 -0.0123 4.1557 4.5158 28 7 0.6805 3.4829 3.6693 29 1 1.5474 3.0863 3.8485 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 -1.9478 4.2603 1.9160 37 1 -3.5569 5.2673 2.9899 38 1 -5.2976 6.5951 4.1116 39 1 -5.8968 7.0058 7.1357 40 1 -4.7663 8.3733 7.2781 41 1 -5.8014 8.2205 5.8381 42 1 -3.1102 6.3730 8.6802 43 1 -1.6912 7.2880 8.1165 44 1 -3.3038 8.0410 8.0898 45 1 -1.0695 5.6259 6.4593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188030306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:35 Heat of formation + Delta-G solvation = -10.572541 kcal Electronic energy + Delta-G solvation = -26677.675025 eV Core-core repulsion = 22853.956272 eV Total energy + Delta-G solvation = -3823.718753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48603 -39.66510 -39.42710 -35.95408 -34.34959 -33.62098 -32.47983 -31.53278 -31.15529 -30.76597 -27.76961 -27.36736 -26.60591 -24.27602 -23.04431 -22.48973 -21.98428 -20.66291 -20.08292 -19.54082 -18.45963 -16.76761 -16.44258 -16.09280 -15.91745 -15.74175 -15.30660 -14.95365 -14.74858 -14.48236 -14.40023 -13.75393 -13.43779 -13.16663 -13.07500 -13.03887 -12.87958 -12.80167 -12.32297 -12.15800 -12.11200 -11.63518 -11.50474 -11.30984 -11.25473 -11.23028 -11.05546 -10.77971 -10.75251 -10.36849 -10.01633 -9.93577 -9.82524 -9.51749 -9.15345 -8.93014 -8.86587 -8.55373 -8.18140 -6.27700 -4.35565 0.88538 1.27292 1.29786 2.62529 2.81267 3.17699 3.22938 3.27406 3.36992 3.39121 3.77369 4.22736 4.30551 4.57895 4.62573 4.81639 4.84505 5.04259 5.06220 5.16326 5.20956 5.26200 5.33854 5.42931 5.50032 5.59236 5.61391 5.62089 5.77464 5.96420 6.00551 6.15089 6.19240 6.21761 6.35549 6.39925 6.44114 6.49868 6.73748 6.84548 6.85535 6.97391 7.05683 7.09081 7.50006 7.61998 7.78138 7.91304 8.03153 8.42170 8.74049 9.29926 10.79048 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.002207 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.624692 B =12684.860548 C =13280.873815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.224 3.776 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.356 6.356 14 C 0.525 3.475 15 O -0.493 6.493 16 C -0.001 4.001 17 C -0.145 4.145 18 C 0.057 3.943 19 C -0.001 4.001 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.088 4.088 23 C -0.117 4.117 24 C -0.089 4.089 25 C -0.116 4.116 26 C -0.093 4.093 27 N -0.258 5.258 28 N -0.356 5.356 29 H 0.456 0.544 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.111 0.889 35 H 0.267 0.733 36 H 0.168 0.832 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 11.091 16.398 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.207 1.207 13 O -0.272 6.272 14 C 0.366 3.634 15 O -0.380 6.380 16 C -0.127 4.127 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.003 4.003 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.089 4.089 23 C -0.173 4.173 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.112 4.112 27 N -0.094 5.094 28 N -0.074 5.074 29 H 0.302 0.698 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.185 0.815 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.230 10.955 16.803 24.029 hybrid contribution 0.996 -0.494 -1.059 1.536 sum -12.234 10.461 15.743 22.516 Atomic orbital electron populations 1.21877 0.98259 0.99270 1.00785 1.22040 0.92730 0.99122 1.03552 1.20800 0.95212 0.88791 0.78000 0.93155 1.21037 0.89386 1.39320 1.06445 0.91254 1.24890 0.99369 0.94639 0.95003 1.69892 1.35400 1.37585 1.09416 0.86211 0.83664 0.77942 0.78282 1.19504 1.20645 1.20672 1.86538 1.33130 1.62503 1.45048 1.19566 0.81477 0.76870 0.85477 1.90856 1.55508 1.58155 1.33472 1.21033 0.96150 1.07452 0.88111 1.22074 0.97583 1.00778 0.96878 1.20290 0.93832 1.03272 0.92424 1.17667 0.91759 0.97279 0.93567 1.21106 0.92462 0.98467 1.00130 1.20893 0.99140 0.98682 0.94618 1.19808 0.95231 0.99153 0.94684 1.20860 0.96890 0.99060 1.00520 1.19657 0.93771 0.98836 0.96678 1.20850 1.02521 1.01038 0.92862 1.21063 0.99224 0.97014 0.93895 1.73278 1.05677 1.10831 1.19593 1.43708 1.18545 1.38169 1.06948 0.69764 0.92650 0.95020 0.94597 0.93892 0.87098 0.92291 0.81477 0.85395 0.85740 0.91209 0.91211 0.91643 0.91192 0.91545 0.91204 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.56 37.16 0.32 -2.77 16 2 C -0.14 -3.27 5.49 -26.74 -0.15 -3.42 16 3 C 0.22 5.71 2.25 -27.89 -0.06 5.65 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.10 8.90 -34.44 -0.31 -14.41 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.29 11.30 55.43 0.63 -23.67 16 9 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 O -0.36 -7.97 9.82 -40.79 -0.40 -8.37 16 14 C 0.52 10.73 6.40 34.30 0.22 10.95 16 15 O -0.49 -11.08 14.10 -19.30 -0.27 -11.35 16 16 C 0.00 -0.01 7.20 -82.11 -0.59 -0.60 16 17 C -0.15 -2.19 10.18 -38.66 -0.39 -2.58 16 18 C 0.06 0.81 6.98 -82.82 -0.58 0.23 16 19 C 0.00 -0.01 5.88 -104.89 -0.62 -0.63 16 20 C -0.10 -1.10 9.58 -39.26 -0.38 -1.48 16 21 C -0.12 -1.07 9.68 -39.63 -0.38 -1.45 16 22 C -0.09 -0.79 5.88 -104.57 -0.62 -1.41 16 23 C -0.12 -0.72 9.60 36.00 0.35 -0.38 16 24 C -0.09 -0.86 5.87 -104.67 -0.61 -1.48 16 25 C -0.12 -0.81 9.60 36.00 0.35 -0.47 16 26 C -0.09 -1.05 9.34 -39.27 -0.37 -1.42 16 27 N -0.26 -3.77 11.83 33.40 0.40 -3.38 16 28 N -0.36 -5.22 6.92 33.44 0.23 -4.99 16 29 H 0.46 5.70 8.96 -190.47 -1.71 3.99 16 30 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 31 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.17 2.22 7.46 -52.49 -0.39 1.83 16 37 H 0.13 1.21 7.13 -52.49 -0.37 0.84 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.37 5.93 -51.93 -0.31 0.06 16 41 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.07 0.40 5.93 -51.93 -0.31 0.09 16 45 H 0.13 1.43 7.87 -52.48 -0.41 1.02 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -30.04 374.67 -10.11 -40.16 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.40 Total: 4.54 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.92 Total: -14.06 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 1.25 Total: -32.03 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.67 Total: -19.72 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.04 -10.11 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188030306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.584 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds