Wall clock time and date at job start Tue Mar 31 2020 15:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46750 * 2 1 4 4 H 1.08996 * 109.47088 * 305.52260 * 3 2 1 5 5 C 1.50704 * 109.46702 * 185.52551 * 3 2 1 6 6 H 1.08002 * 119.99960 * 245.67400 * 5 3 2 7 7 C 1.37878 * 120.00038 * 65.67448 * 5 3 2 8 8 N 1.31515 * 119.99967 * 355.67736 * 7 5 3 9 9 Si 1.86799 * 120.00121 * 175.67218 * 7 5 3 10 10 H 1.48509 * 109.46935 * 94.99561 * 9 7 5 11 11 H 1.48493 * 109.47559 * 214.99965 * 9 7 5 12 12 H 1.48501 * 109.46907 * 335.00199 * 9 7 5 13 13 O 1.45195 * 109.47413 * 65.52690 * 3 2 1 14 14 C 1.34786 * 117.00084 * 270.00097 * 13 3 2 15 15 O 1.21547 * 119.99873 * 359.97438 * 14 13 3 16 16 C 1.47102 * 120.00346 * 179.97438 * 14 13 3 17 17 C 1.46776 * 126.89516 * 0.03990 * 16 14 13 18 18 C 1.34394 * 106.50652 * 179.70115 * 17 16 14 19 19 C 1.50703 * 125.55536 * 180.24280 * 18 17 16 20 20 N 1.36764 * 108.89396 * 0.42443 * 18 17 16 21 21 C 1.39777 * 124.94210 * 179.82238 * 20 18 17 22 22 C 1.38948 * 119.68779 * 310.68045 * 21 20 18 23 23 C 1.38413 * 119.10709 * 180.02562 * 22 21 20 24 24 C 1.38803 * 118.48285 * 0.02562 * 23 22 21 25 25 C 1.38112 * 119.29776 * 0.02562 * 24 23 22 26 26 N 1.31913 * 120.83839 * 359.97438 * 25 24 23 27 27 C 1.35471 * 110.11081 * 359.55630 * 20 18 17 28 28 C 1.50705 * 125.85571 * 180.30283 * 27 20 18 29 29 H 1.09002 * 109.46925 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.46678 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46970 * 299.99905 * 1 2 3 32 32 H 1.09001 * 109.46970 * 240.00095 * 2 1 3 33 33 H 1.08998 * 109.47273 * 119.99598 * 2 1 3 34 34 H 0.97002 * 119.99777 * 180.02562 * 8 7 5 35 35 H 1.07992 * 126.74370 * 359.97438 * 17 16 14 36 36 H 1.09004 * 109.46637 * 275.02549 * 19 18 17 37 37 H 1.09002 * 109.46619 * 35.01796 * 19 18 17 38 38 H 1.09001 * 109.47227 * 155.02238 * 19 18 17 39 39 H 1.07994 * 120.44952 * 0.03060 * 22 21 20 40 40 H 1.07998 * 120.75689 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.35331 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.58231 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46968 * 90.00188 * 28 27 20 44 44 H 1.08997 * 109.46799 * 209.99699 * 28 27 20 45 45 H 1.09000 * 109.47298 * 329.99713 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 -0.8364 5 6 3.5408 1.4447 -0.1368 6 1 4.1565 1.8033 0.6749 7 6 4.1278 0.9890 -1.2982 8 7 3.3841 0.4738 -2.2526 9 14 5.9795 1.1037 -1.5160 10 1 6.6057 -0.1817 -1.1144 11 1 6.2941 1.3839 -2.9399 12 1 6.5109 2.1998 -0.6667 13 8 1.6666 2.0879 1.2459 14 6 0.4787 2.7242 1.2735 15 8 -0.2256 2.7395 0.2830 16 6 0.0346 3.4000 2.5023 17 6 0.7589 3.4771 3.7765 18 6 -0.0134 4.1923 4.6121 19 6 0.3251 4.5368 6.0396 20 7 -1.1586 4.5531 3.9572 21 6 -2.1981 5.3022 4.5156 22 6 -2.7194 4.9413 5.7520 23 6 -3.7489 5.6913 6.2936 24 6 -4.2231 6.7805 5.5756 25 6 -3.6582 7.0808 4.3516 26 7 -2.6778 6.3471 3.8610 27 6 -1.1361 4.0836 2.6866 28 6 -2.2151 4.2812 1.6533 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7972 0.1529 -3.0695 35 1 1.7248 3.0477 3.9976 36 1 0.0293 3.7149 6.6916 37 1 1.3988 4.7027 6.1285 38 1 -0.2078 5.4418 6.3312 39 1 -2.3265 4.0871 6.2833 40 1 -4.1736 5.4348 7.2529 41 1 -5.0257 7.3862 5.9695 42 1 -4.0238 7.9269 3.7889 43 1 -2.0180 5.1948 1.0923 44 1 -2.2251 3.4311 0.9712 45 1 -3.1827 4.3608 2.1489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188054309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:34 Heat of formation + Delta-G solvation = -4.834453 kcal Electronic energy + Delta-G solvation = -27733.660623 eV Core-core repulsion = 23910.190693 eV Total energy + Delta-G solvation = -3823.469931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96276 -40.04874 -38.93622 -35.53730 -33.59725 -33.25978 -33.11124 -32.36602 -31.27934 -29.65957 -29.12264 -27.19345 -25.13870 -24.11905 -24.03404 -23.08804 -21.90982 -20.39017 -19.75277 -18.85184 -17.25508 -16.95424 -16.81851 -16.47328 -16.01152 -15.39998 -15.27347 -14.90599 -14.59869 -14.33841 -14.08007 -13.64033 -13.58246 -13.26838 -13.19914 -12.91735 -12.73912 -12.56224 -12.43135 -12.16879 -12.05826 -11.92333 -11.44993 -11.30445 -11.12472 -11.04209 -10.86915 -10.52199 -10.44853 -10.17117 -10.07394 -9.81435 -9.68130 -9.39421 -9.15787 -8.72004 -8.47160 -8.32204 -7.94912 -6.09294 -4.14484 0.40133 0.72274 1.90903 2.36168 2.45656 3.24090 3.30662 3.36598 3.41783 3.96462 3.99383 4.10649 4.28461 4.41207 4.46104 4.54736 4.55758 4.81494 4.98816 5.10299 5.17848 5.23427 5.33690 5.39371 5.44023 5.60721 5.66237 5.73060 5.82720 5.89321 6.01332 6.08532 6.23319 6.34055 6.38670 6.46282 6.60116 6.86707 6.97014 7.01590 7.12359 7.24422 7.31024 7.41974 7.51701 7.73520 7.84966 8.07781 8.29232 8.82609 9.10419 9.50723 10.98494 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.002774 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.533515 B =10092.823171 C =10554.188401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.350 6.350 14 C 0.530 3.470 15 O -0.525 6.525 16 C -0.199 4.199 17 C -0.125 4.125 18 C 0.001 3.999 19 C -0.081 4.081 20 N -0.399 5.399 21 C 0.341 3.659 22 C -0.164 4.164 23 C -0.059 4.059 24 C -0.178 4.178 25 C 0.123 3.877 26 N -0.484 5.484 27 C 0.125 3.875 28 C -0.085 4.085 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.165 0.835 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 11.027 19.288 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.735 3.265 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.375 3.625 15 O -0.417 6.417 16 C -0.206 4.206 17 C -0.148 4.148 18 C -0.102 4.102 19 C -0.139 4.139 20 N -0.077 5.077 21 C 0.115 3.885 22 C -0.186 4.186 23 C -0.085 4.085 24 C -0.198 4.198 25 C -0.035 4.035 26 N -0.195 5.195 27 C 0.014 3.986 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.183 0.817 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.291 11.281 18.110 26.250 hybrid contribution 0.559 -0.189 0.501 0.774 sum -14.732 11.092 18.611 26.200 Atomic orbital electron populations 1.21860 0.98362 0.98800 1.00954 1.21973 0.92703 0.99465 1.02742 1.20634 0.94974 0.88712 0.78828 0.93299 1.21050 0.89840 1.43221 1.01456 0.91380 1.24886 0.99000 0.94811 0.95298 1.69934 1.35439 1.40075 1.07137 0.86318 0.84205 0.78503 0.77456 1.20531 1.21011 1.19596 1.86542 1.33822 1.62660 1.43544 1.19834 0.80642 0.75990 0.85988 1.90737 1.55255 1.59897 1.35806 1.19543 0.96643 1.09761 0.94681 1.21988 1.00166 1.01424 0.91261 1.20220 0.87276 1.06184 0.96537 1.20367 1.03009 1.01246 0.89250 1.40968 1.14564 1.41457 1.10737 1.18203 0.89627 0.89964 0.90676 1.21898 0.98214 1.02114 0.96385 1.21540 0.93909 0.93339 0.99694 1.22238 1.02147 0.98972 0.96419 1.22683 0.90502 0.97084 0.93199 1.67229 1.12180 1.03976 1.36151 1.20485 0.97126 0.96713 0.84299 1.20520 0.93223 1.04846 0.95615 0.92803 0.95050 0.94691 0.88107 0.94030 0.92540 0.82377 0.90842 0.89708 0.92188 0.83897 0.83836 0.84004 0.81743 0.89945 0.88058 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.57 37.16 0.32 -2.95 16 2 C -0.13 -3.37 5.53 -26.73 -0.15 -3.52 16 3 C 0.22 6.13 2.18 -27.88 -0.06 6.07 16 4 H 0.05 1.50 7.16 -51.93 -0.37 1.13 16 5 C -0.52 -14.96 8.83 -34.44 -0.30 -15.26 16 6 H 0.07 1.95 7.82 -52.49 -0.41 1.53 16 7 C 0.06 1.75 5.34 -17.82 -0.10 1.66 16 8 N -0.89 -25.79 11.56 55.43 0.64 -25.15 16 9 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 O -0.35 -8.92 9.71 -40.73 -0.40 -9.31 16 14 C 0.53 12.31 6.42 34.33 0.22 12.53 16 15 O -0.52 -12.85 12.00 -19.30 -0.23 -13.08 16 16 C -0.20 -3.86 6.29 -103.37 -0.65 -4.51 16 17 C -0.12 -2.05 10.88 -37.49 -0.41 -2.46 16 18 C 0.00 0.02 6.67 -81.75 -0.55 -0.53 16 19 C -0.08 -0.75 9.07 36.01 0.33 -0.42 16 20 N -0.40 -5.79 2.87 -54.14 -0.16 -5.95 16 21 C 0.34 4.10 5.96 -154.41 -0.92 3.18 16 22 C -0.16 -1.42 8.45 -39.25 -0.33 -1.75 16 23 C -0.06 -0.35 10.17 -39.31 -0.40 -0.75 16 24 C -0.18 -0.99 10.11 -39.42 -0.40 -1.39 16 25 C 0.12 0.96 11.18 -17.56 -0.20 0.77 16 26 N -0.48 -5.72 9.55 -12.30 -0.12 -5.83 16 27 C 0.13 2.14 6.84 -81.50 -0.56 1.58 16 28 C -0.08 -1.32 9.06 36.01 0.33 -0.99 16 29 H 0.05 1.28 7.82 -51.93 -0.41 0.88 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.79 6.05 -51.93 -0.31 0.47 16 32 H 0.10 2.79 6.26 -51.93 -0.33 2.46 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.51 7.07 -51.93 -0.37 0.14 16 39 H 0.14 1.06 7.51 -52.49 -0.39 0.67 16 40 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.10 1.73 6.47 -51.93 -0.34 1.39 16 45 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -34.12 373.10 -9.74 -43.86 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.26 Total: 2.00 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.82 Total: -8.75 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.37 Total: -36.93 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.63 Total: -22.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.12 -9.74 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188054309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.026 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds