Wall clock time and date at job start Tue Mar 31 2020 15:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34748 * 117.00365 * 89.99983 * 13 3 2 15 15 O 1.21528 * 120.00230 * 359.97438 * 14 13 3 16 16 C 1.47284 * 120.00147 * 180.02562 * 14 13 3 17 17 C 1.41343 * 126.42613 * 359.68230 * 16 14 13 18 18 N 1.30435 * 108.01037 * 179.85431 * 17 16 14 19 19 N 1.39928 * 108.92042 * 0.40937 * 18 17 16 20 20 C 1.46501 * 125.74040 * 179.73282 * 19 18 17 21 21 C 1.50695 * 109.47036 * 270.00027 * 20 19 18 22 22 C 1.38238 * 120.00159 * 269.72652 * 21 20 19 23 23 C 1.38229 * 120.00186 * 179.76973 * 22 21 20 24 24 C 1.38233 * 119.99981 * 0.50788 * 23 22 21 25 25 C 1.38239 * 120.00118 * 359.74596 * 24 23 22 26 26 C 1.38233 * 120.00145 * 90.00413 * 21 20 19 27 27 C 1.34219 * 108.50892 * 359.73623 * 19 18 17 28 28 C 1.50707 * 126.28838 * 180.02562 * 27 19 18 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 1.08005 * 125.99361 * 0.02562 * 17 16 14 36 36 H 1.08997 * 109.47235 * 30.00425 * 20 19 18 37 37 H 1.09000 * 109.46788 * 149.99809 * 20 19 18 38 38 H 1.08003 * 119.99642 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.00317 * 180.23098 * 23 22 21 40 40 H 1.08000 * 120.00560 * 179.72386 * 24 23 22 41 41 H 1.08002 * 120.00174 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.99895 * 0.02562 * 26 21 20 43 43 H 1.08998 * 109.46955 * 269.97284 * 28 27 19 44 44 H 1.08997 * 109.47332 * 29.97574 * 28 27 19 45 45 H 1.09006 * 109.46788 * 149.97313 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2597 16 6 0.0128 3.4084 -2.4802 17 6 0.7107 3.4848 -3.7070 18 7 -0.0201 4.1667 -4.5450 19 7 -1.1985 4.5617 -3.9021 20 6 -2.2777 5.3500 -4.5021 21 6 -2.0125 6.8166 -4.2786 22 6 -2.5032 7.4433 -3.1484 23 6 -2.2559 8.7874 -2.9410 24 6 -1.5269 9.5073 -3.8690 25 6 -1.0407 8.8818 -5.0019 26 6 -1.2836 7.5364 -5.2066 27 6 -1.1735 4.0968 -2.6432 28 6 -2.2435 4.2899 -1.5997 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 1.6781 3.0518 -3.9149 36 1 -2.3235 5.1480 -5.5722 37 1 -3.2266 5.0778 -4.0401 38 1 -3.0762 6.8818 -2.4254 39 1 -2.6361 9.2762 -2.0562 40 1 -1.3375 10.5585 -3.7093 41 1 -0.4715 9.4444 -5.7272 42 1 -0.9044 7.0479 -6.0921 43 1 -2.0422 5.2016 -1.0373 44 1 -3.2155 4.3703 -2.0864 45 1 -2.2467 3.4373 -0.9206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188080064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:06 Heat of formation + Delta-G solvation = 4.242094 kcal Electronic energy + Delta-G solvation = -27503.853234 eV Core-core repulsion = 23680.776892 eV Total energy + Delta-G solvation = -3823.076342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40793 -39.50900 -38.97723 -35.58362 -34.49119 -33.36784 -32.18812 -31.32048 -31.20996 -30.67377 -27.78725 -26.92526 -26.46956 -23.42969 -22.96977 -22.40285 -22.04985 -20.63676 -19.64484 -19.07825 -17.52085 -17.10281 -16.51078 -16.05917 -15.80814 -15.54632 -15.25352 -14.93806 -14.62253 -14.41244 -14.23170 -13.75131 -13.39736 -13.25477 -12.96367 -12.80413 -12.78658 -12.72702 -12.50954 -12.13347 -11.98471 -11.55031 -11.37166 -11.33006 -11.28009 -11.10470 -10.88004 -10.67987 -10.55892 -10.22263 -9.70280 -9.50274 -9.35912 -9.25180 -9.24500 -9.17586 -8.71616 -8.48304 -8.36279 -6.12193 -4.18493 0.84282 1.07941 1.62613 2.39078 2.40861 3.30605 3.33870 3.36634 3.50206 3.86350 3.88979 4.25642 4.28556 4.42204 4.59624 4.66389 4.69945 4.79011 4.93958 5.00551 5.13186 5.17992 5.19957 5.30494 5.51537 5.56458 5.59609 5.69453 5.77783 6.01104 6.10017 6.17804 6.19215 6.22696 6.31845 6.39677 6.54005 6.63204 6.65047 6.86327 6.97976 7.06664 7.26180 7.37675 7.66769 7.69489 7.83006 8.05502 8.25007 8.76704 9.03109 9.46576 10.94604 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002783 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.853576 B =10060.235901 C =10597.924742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.352 6.352 14 C 0.533 3.467 15 O -0.527 6.527 16 C -0.270 4.270 17 C 0.105 3.895 18 N -0.305 5.305 19 N -0.360 5.360 20 C 0.172 3.828 21 C -0.118 4.118 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.089 4.089 27 C 0.156 3.844 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.197 0.803 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 13.957 -13.087 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.268 6.268 14 C 0.378 3.622 15 O -0.419 6.419 16 C -0.282 4.282 17 C -0.082 4.082 18 N -0.124 5.124 19 N -0.140 5.140 20 C 0.052 3.948 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.108 4.108 27 C 0.024 3.976 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.214 0.786 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.485 14.348 -13.860 24.653 hybrid contribution 1.095 -0.349 1.020 1.536 sum -13.390 13.999 -12.840 23.241 Atomic orbital electron populations 1.21848 0.98410 0.98804 1.00813 1.22006 0.92649 0.99445 1.03214 1.20622 0.94793 0.88672 0.78763 0.93534 1.21026 0.89828 1.38749 1.06154 0.91407 1.24868 0.99093 0.94857 0.95116 1.69885 1.35364 1.37967 1.09461 0.86363 0.84098 0.78445 0.77401 1.20040 1.21113 1.19962 1.86516 1.33760 1.62626 1.43875 1.19770 0.80623 0.75918 0.85885 1.90721 1.55766 1.60179 1.35257 1.19401 0.98040 1.14557 0.96236 1.24216 0.99301 0.94664 0.90060 1.77163 0.94026 1.19894 1.21276 1.48403 1.16263 1.40933 1.08373 1.20563 0.87293 0.86161 1.00800 1.19977 1.00816 0.94745 0.96345 1.21128 0.99307 0.95073 0.96350 1.21168 0.99140 0.94294 0.99440 1.21254 0.97278 1.00088 0.94232 1.21188 1.00120 0.94837 0.98002 1.21105 0.96508 0.94170 0.99010 1.21407 0.96273 0.93225 0.86650 1.20734 0.93427 1.05756 0.95913 0.92843 0.95046 0.94807 0.87471 0.94064 0.92432 0.78604 0.87550 0.87908 0.85767 0.85698 0.85897 0.85789 0.85623 0.89575 0.91401 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.96 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.69 8.90 -34.44 -0.31 -14.99 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 13 O -0.35 -8.57 9.65 -40.62 -0.39 -8.97 16 14 C 0.53 11.63 6.41 34.41 0.22 11.85 16 15 O -0.53 -12.10 12.03 -19.29 -0.23 -12.34 16 16 C -0.27 -4.86 6.13 -105.08 -0.64 -5.50 16 17 C 0.11 1.72 11.87 -16.96 -0.20 1.52 16 18 N -0.31 -4.63 12.50 30.87 0.39 -4.24 16 19 N -0.36 -4.72 3.56 -57.76 -0.21 -4.92 16 20 C 0.17 1.54 6.34 -5.20 -0.03 1.51 16 21 C -0.12 -1.10 5.46 -104.63 -0.57 -1.67 16 22 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 24 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.09 -0.83 9.70 -39.58 -0.38 -1.22 16 27 C 0.16 2.29 7.01 -81.59 -0.57 1.72 16 28 C -0.10 -1.18 9.32 36.01 0.34 -0.84 16 29 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.73 6.06 -51.93 -0.31 0.42 16 32 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.20 2.90 8.06 -52.48 -0.42 2.47 16 36 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.10 0.66 6.96 -51.93 -0.36 0.30 16 38 H 0.12 0.88 7.81 -52.48 -0.41 0.47 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.55 7.05 -51.93 -0.37 0.18 16 45 H 0.11 1.53 6.51 -51.93 -0.34 1.19 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -32.73 376.66 -9.10 -41.83 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.22 Total: 3.19 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.72 Total: -11.83 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.81 Total: -33.80 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.62 Total: -21.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.73 -9.10 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188080064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.071 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds