Wall clock time and date at job start Tue Mar 31 2020 15:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34748 * 117.00365 * 89.99983 * 13 3 2 15 15 O 1.21528 * 120.00230 * 359.97438 * 14 13 3 16 16 C 1.47284 * 120.00147 * 180.02562 * 14 13 3 17 17 C 1.41343 * 126.42613 * 359.68230 * 16 14 13 18 18 N 1.30435 * 108.01037 * 179.85431 * 17 16 14 19 19 N 1.39928 * 108.92042 * 0.40937 * 18 17 16 20 20 C 1.46501 * 125.74040 * 179.73282 * 19 18 17 21 21 C 1.50695 * 109.47036 * 270.00027 * 20 19 18 22 22 C 1.38238 * 120.00159 * 269.72652 * 21 20 19 23 23 C 1.38229 * 120.00186 * 179.76973 * 22 21 20 24 24 C 1.38233 * 119.99981 * 0.50788 * 23 22 21 25 25 C 1.38239 * 120.00118 * 359.74596 * 24 23 22 26 26 C 1.38233 * 120.00145 * 90.00413 * 21 20 19 27 27 C 1.34219 * 108.50892 * 359.73623 * 19 18 17 28 28 C 1.50707 * 126.28838 * 180.02562 * 27 19 18 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 1.08005 * 125.99361 * 0.02562 * 17 16 14 36 36 H 1.08997 * 109.47235 * 30.00425 * 20 19 18 37 37 H 1.09000 * 109.46788 * 149.99809 * 20 19 18 38 38 H 1.08003 * 119.99642 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.00317 * 180.23098 * 23 22 21 40 40 H 1.08000 * 120.00560 * 179.72386 * 24 23 22 41 41 H 1.08002 * 120.00174 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.99895 * 0.02562 * 26 21 20 43 43 H 1.08998 * 109.46955 * 269.97284 * 28 27 19 44 44 H 1.08997 * 109.47332 * 29.97574 * 28 27 19 45 45 H 1.09006 * 109.46788 * 149.97313 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2597 16 6 0.0128 3.4084 -2.4802 17 6 0.7107 3.4848 -3.7070 18 7 -0.0201 4.1667 -4.5450 19 7 -1.1985 4.5617 -3.9021 20 6 -2.2777 5.3500 -4.5021 21 6 -2.0125 6.8166 -4.2786 22 6 -2.5032 7.4433 -3.1484 23 6 -2.2559 8.7874 -2.9410 24 6 -1.5269 9.5073 -3.8690 25 6 -1.0407 8.8818 -5.0019 26 6 -1.2836 7.5364 -5.2066 27 6 -1.1735 4.0968 -2.6432 28 6 -2.2435 4.2899 -1.5997 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 1.6781 3.0518 -3.9149 36 1 -2.3235 5.1480 -5.5722 37 1 -3.2266 5.0778 -4.0401 38 1 -3.0762 6.8818 -2.4254 39 1 -2.6361 9.2762 -2.0562 40 1 -1.3375 10.5585 -3.7093 41 1 -0.4715 9.4444 -5.7272 42 1 -0.9044 7.0479 -6.0921 43 1 -2.0422 5.2016 -1.0373 44 1 -3.2155 4.3703 -2.0864 45 1 -2.2467 3.4373 -0.9206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188080064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:05 Heat of formation + Delta-G solvation = -12.471675 kcal Electronic energy + Delta-G solvation = -27504.577997 eV Core-core repulsion = 23680.776892 eV Total energy + Delta-G solvation = -3823.801105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58487 -40.84996 -40.06108 -37.43656 -35.53228 -35.24488 -33.34991 -33.20608 -31.83509 -31.65889 -29.44162 -28.45811 -27.33512 -25.32077 -24.01891 -23.54272 -22.89793 -22.11073 -21.21085 -20.46040 -18.97006 -18.48913 -17.87171 -17.48799 -17.06402 -16.71168 -16.50914 -16.34364 -15.97081 -15.65842 -15.29154 -14.87577 -14.71417 -14.37470 -14.19215 -14.13749 -13.80236 -13.72252 -13.54993 -13.37365 -13.29671 -13.21973 -13.07490 -13.04745 -12.75472 -12.50820 -12.21459 -12.11897 -11.93064 -11.89628 -11.70191 -11.37213 -11.10369 -10.75867 -10.48048 -10.44399 -9.88017 -9.87337 -9.72628 -8.23770 -6.39823 0.13780 0.40646 0.44901 1.05738 1.40357 1.43932 1.46684 1.54751 2.19674 2.31449 2.49590 2.84825 3.05638 3.45798 3.56778 3.62120 3.90097 3.94063 4.07281 4.14271 4.23224 4.26573 4.38059 4.42459 4.45711 4.51728 4.56155 4.62705 4.64453 4.69595 4.87561 4.92384 4.99278 5.06853 5.09924 5.14833 5.28447 5.33732 5.47735 5.48615 5.54564 5.56602 5.56879 5.73062 5.82479 6.03232 6.04441 6.21627 6.46888 6.65702 7.14351 7.33768 8.82873 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002783 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.853576 B =10060.235901 C =10597.924742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.129 4.129 3 C 0.229 3.771 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.265 1.265 13 O -0.362 6.362 14 C 0.528 3.472 15 O -0.546 6.546 16 C -0.311 4.311 17 C 0.099 3.901 18 N -0.309 5.309 19 N -0.345 5.345 20 C 0.163 3.837 21 C -0.130 4.130 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.105 4.105 27 C 0.173 3.827 28 C -0.100 4.100 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.270 0.730 35 H 0.201 0.799 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 14.993 -14.041 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.190 1.190 13 O -0.279 6.279 14 C 0.375 3.625 15 O -0.439 6.439 16 C -0.324 4.324 17 C -0.089 4.089 18 N -0.128 5.128 19 N -0.124 5.124 20 C 0.045 3.955 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.153 4.153 26 C -0.124 4.124 27 C 0.039 3.961 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.218 0.782 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.507 15.405 -14.855 26.428 hybrid contribution 1.275 -0.522 1.258 1.866 sum -14.232 14.883 -13.596 24.676 Atomic orbital electron populations 1.21682 0.96175 1.00389 1.00160 1.21851 0.94601 0.98119 1.02099 1.20317 0.94289 0.89202 0.78610 0.97441 1.21317 0.90718 1.39885 1.06864 0.91837 1.25762 1.04068 0.93927 0.94372 1.70006 1.37381 1.37962 1.09799 0.85301 0.77936 0.78698 0.77881 1.19541 1.20125 1.18956 1.86497 1.35570 1.63367 1.42463 1.20366 0.79518 0.75459 0.87113 1.90697 1.55924 1.60993 1.36334 1.19315 1.00376 1.17304 0.95359 1.24308 0.99796 0.95042 0.89721 1.77128 0.94780 1.19607 1.21276 1.48772 1.16135 1.39822 1.07667 1.21051 0.87005 0.85553 1.01916 1.20041 1.01461 0.94798 0.96813 1.21415 0.99312 0.95511 0.96424 1.21495 0.99044 0.94476 1.00113 1.21576 0.96813 1.01167 0.93980 1.21455 1.00340 0.94870 0.98646 1.21298 0.96906 0.94773 0.99397 1.21749 0.95509 0.91229 0.87570 1.20842 0.94675 1.05095 0.95135 0.94248 0.92217 0.94615 0.89566 0.93924 0.92066 0.78210 0.86118 0.84606 0.84023 0.83979 0.84079 0.84414 0.85499 0.88522 0.86890 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.56 71.98 0.62 -5.08 16 2 C -0.13 -6.66 5.49 30.59 0.17 -6.50 16 3 C 0.23 12.86 2.25 29.85 0.07 12.92 16 4 H 0.01 0.49 7.16 -2.38 -0.02 0.47 16 5 C -0.55 -32.06 8.90 25.60 0.23 -31.84 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.04 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.97 11.29 21.45 0.24 -52.73 16 9 Si 0.98 43.74 29.54 68.60 2.03 45.76 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 O -0.36 -18.41 9.65 -56.58 -0.55 -18.96 16 14 C 0.53 23.83 6.41 70.20 0.45 24.28 16 15 O -0.55 -25.98 12.03 19.75 0.24 -25.74 16 16 C -0.31 -11.26 6.13 -20.16 -0.12 -11.39 16 17 C 0.10 3.24 11.87 85.66 1.02 4.26 16 18 N -0.31 -9.07 12.50 -56.24 -0.70 -9.77 16 19 N -0.35 -8.32 3.56 -336.67 -1.20 -9.52 16 20 C 0.16 2.41 6.34 85.63 0.54 2.96 16 21 C -0.13 -2.13 5.46 -19.87 -0.11 -2.23 16 22 C -0.11 -1.60 9.70 22.27 0.22 -1.39 16 23 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 24 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 25 C -0.14 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 27 C 0.17 4.84 7.01 42.17 0.30 5.14 16 28 C -0.10 -2.12 9.32 71.24 0.66 -1.46 16 29 H 0.04 1.85 7.79 -2.39 -0.02 1.83 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.56 6.06 -2.38 -0.01 1.55 16 32 H 0.09 4.84 5.95 -2.39 -0.01 4.82 16 33 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.20 6.10 8.06 -2.91 -0.02 6.07 16 36 H 0.12 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.14 1.12 6.96 -2.39 -0.02 1.11 16 38 H 0.14 1.50 7.81 -2.91 -0.02 1.48 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 1.35 7.05 -2.39 -0.02 1.33 16 45 H 0.09 2.33 6.51 -2.38 -0.02 2.31 16 Total: -1.00 -73.12 376.66 6.42 -66.69 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.00 Total: 19.73 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 5.37 Total: -15.46 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.66 Total: -72.02 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.31 Total: -44.70 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.12 6.42 -66.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188080064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.222 kcal (2) G-P(sol) polarization free energy of solvation -73.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds