Wall clock time and date at job start Tue Mar 31 2020 15:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47521 * 2 1 4 4 H 1.09000 * 109.47234 * 55.00007 * 3 2 1 5 5 C 1.50701 * 109.47461 * 175.00129 * 3 2 1 6 6 H 1.07998 * 120.00184 * 120.00224 * 5 3 2 7 7 C 1.37878 * 119.99758 * 299.99816 * 5 3 2 8 8 N 1.31513 * 120.00101 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99709 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47011 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46767 * 120.00177 * 9 7 5 12 12 H 1.48500 * 109.47174 * 240.00153 * 9 7 5 13 13 O 1.45200 * 109.47125 * 295.00308 * 3 2 1 14 14 C 1.34762 * 116.99970 * 89.99537 * 13 3 2 15 15 O 1.21530 * 119.99892 * 0.02562 * 14 13 3 16 16 C 1.47264 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.41385 * 126.42242 * 0.03115 * 16 14 13 18 18 N 1.30456 * 108.05848 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.93955 * 0.02562 * 18 17 16 20 20 C 1.40146 * 125.76315 * 179.97438 * 19 18 17 21 21 C 1.38863 * 120.06786 * 127.85471 * 20 19 18 22 22 C 1.38102 * 119.92857 * 179.74298 * 21 20 19 23 23 C 1.38297 * 120.07058 * 0.52716 * 22 21 20 24 24 C 1.38260 * 120.13519 * 359.72656 * 23 22 21 25 25 C 1.38139 * 120.06567 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.03477 * 180.02562 * 25 24 23 27 27 C 1.34506 * 108.47100 * 359.72491 * 19 18 17 28 28 C 1.50703 * 126.31173 * 180.26973 * 27 19 18 29 29 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47292 * 59.99597 * 1 2 3 31 31 H 1.09006 * 109.46860 * 299.99727 * 1 2 3 32 32 H 1.09000 * 109.47292 * 120.00403 * 2 1 3 33 33 H 1.09000 * 109.47157 * 239.99940 * 2 1 3 34 34 H 0.97001 * 120.00053 * 179.97438 * 8 7 5 35 35 H 1.08001 * 125.97424 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.03688 * 359.97438 * 21 20 19 37 37 H 1.08009 * 119.96280 * 180.23166 * 22 21 20 38 38 H 1.07997 * 119.93565 * 179.70096 * 23 22 21 39 39 H 1.07998 * 119.96515 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.47321 * 273.39411 * 26 25 24 41 41 H 1.09003 * 109.47630 * 33.39025 * 26 25 24 42 42 H 1.08995 * 109.47585 * 153.39331 * 26 25 24 43 43 H 1.08997 * 109.47186 * 273.78136 * 28 27 19 44 44 H 1.09000 * 109.47089 * 33.77722 * 28 27 19 45 45 H 1.09002 * 109.47184 * 153.77933 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8799 1.3811 10 1 6.5988 1.5451 0.1935 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5191 1.4626 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2275 2.7403 -0.2594 16 6 0.0134 3.4093 -2.4798 17 6 0.7091 3.4807 -3.7085 18 7 -0.0183 4.1675 -4.5458 19 7 -1.1970 4.5640 -3.9041 20 6 -2.2284 5.3189 -4.4789 21 6 -3.5398 4.8664 -4.4164 22 6 -4.5546 5.6152 -4.9792 23 6 -4.2646 6.8092 -5.6140 24 6 -2.9593 7.2597 -5.6825 25 6 -1.9405 6.5178 -5.1170 26 6 -0.5180 7.0098 -5.1916 27 6 -1.1753 4.0935 -2.6442 28 6 -2.2485 4.2811 -1.6029 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0619 2.9495 35 1 1.6741 3.0432 -3.9176 36 1 -3.7663 3.9318 -3.9250 37 1 -5.5752 5.2656 -4.9276 38 1 -5.0593 7.3906 -6.0576 39 1 -2.7359 8.1923 -6.1793 40 1 -0.0668 6.6766 -6.1262 41 1 -0.5077 8.0990 -5.1513 42 1 0.0494 6.6098 -4.3513 43 1 -2.0880 5.2249 -1.0818 44 1 -3.2253 4.2945 -2.0863 45 1 -2.2082 3.4597 -0.8876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188108478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:20 Heat of formation + Delta-G solvation = 9.042845 kcal Electronic energy + Delta-G solvation = -27714.361089 eV Core-core repulsion = 23891.492923 eV Total energy + Delta-G solvation = -3822.868166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80427 -39.59382 -38.95798 -35.64615 -33.96011 -33.39261 -33.25195 -31.84268 -31.28826 -29.63736 -27.82837 -27.07036 -26.94789 -23.97516 -23.13112 -22.47452 -22.12866 -20.60563 -19.84311 -19.16864 -17.80321 -16.77076 -16.38318 -16.31893 -15.97813 -15.27723 -15.24510 -14.87603 -14.50870 -14.22966 -14.18383 -13.84863 -13.62333 -13.20506 -12.93480 -12.89189 -12.77516 -12.56814 -12.41988 -12.14944 -12.04624 -11.72334 -11.55673 -11.40402 -11.31011 -11.11540 -10.93161 -10.78977 -10.58309 -10.22994 -10.02178 -9.73049 -9.52085 -9.29069 -9.20194 -8.94296 -8.73793 -8.47416 -8.38954 -6.14783 -4.21057 0.61361 0.91267 1.61467 2.18626 2.29801 3.24685 3.26056 3.33099 3.38093 3.79167 3.84944 4.36036 4.39881 4.42419 4.49777 4.61238 4.84070 4.87802 4.91031 5.11535 5.17429 5.24295 5.34133 5.43930 5.45701 5.47251 5.51359 5.72978 5.88749 5.92747 5.99617 6.03588 6.10632 6.15946 6.29059 6.36478 6.37403 6.48650 6.57750 6.94434 7.00084 7.03414 7.23092 7.33427 7.54051 7.67006 7.79897 8.01634 8.21595 8.72793 8.98256 9.44130 10.92097 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002749 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.344828 B =10183.715936 C =10918.425728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.350 6.350 14 C 0.533 3.467 15 O -0.524 6.524 16 C -0.262 4.262 17 C 0.109 3.891 18 N -0.296 5.296 19 N -0.321 5.321 20 C 0.143 3.857 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.065 4.065 26 C -0.112 4.112 27 C 0.159 3.841 28 C -0.106 4.106 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.203 0.797 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 11.876 -14.351 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.266 6.266 14 C 0.378 3.622 15 O -0.416 6.416 16 C -0.274 4.274 17 C -0.080 4.080 18 N -0.112 5.112 19 N -0.096 5.096 20 C 0.053 3.947 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.067 4.067 26 C -0.169 4.169 27 C 0.031 3.969 28 C -0.164 4.164 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.312 12.263 -15.083 24.746 hybrid contribution 1.012 -0.540 1.004 1.525 sum -14.300 11.723 -14.080 23.241 Atomic orbital electron populations 1.21851 0.98410 0.98864 1.00795 1.22011 0.92647 0.99409 1.03270 1.20661 0.94898 0.88694 0.78674 0.93462 1.21090 0.89750 1.38638 1.06138 0.91281 1.24876 0.99127 0.94858 0.95121 1.69901 1.35213 1.38010 1.09508 0.86256 0.84080 0.77833 0.78190 1.19477 1.20829 1.20767 1.86520 1.33556 1.62577 1.43989 1.19696 0.80745 0.76003 0.85755 1.90728 1.55693 1.60035 1.35099 1.19421 0.97797 1.13883 0.96308 1.24376 0.99367 0.94334 0.89895 1.77367 0.93561 1.19623 1.20683 1.45430 1.15255 1.40723 1.08207 1.17255 0.85599 0.91257 1.00572 1.21181 0.91066 1.00473 1.00675 1.21010 0.98981 0.94923 0.98061 1.21265 0.96654 0.96339 0.98649 1.20984 0.92023 1.00053 0.99762 1.19934 0.97350 0.92292 0.97109 1.20776 0.91637 1.00717 1.03739 1.21569 0.96380 0.92936 0.86010 1.20848 0.93735 1.05738 0.96043 0.94996 0.94842 0.92821 0.87422 0.94026 0.92514 0.78076 0.84998 0.84950 0.85298 0.85046 0.90201 0.91407 0.91247 0.89501 0.90929 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.80 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.45 8.90 -34.44 -0.31 -14.76 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.05 11.29 55.43 0.63 -24.42 16 9 Si 0.91 21.07 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 O -0.35 -8.37 9.65 -40.66 -0.39 -8.76 16 14 C 0.53 11.43 6.40 34.40 0.22 11.65 16 15 O -0.52 -11.87 11.96 -19.29 -0.23 -12.11 16 16 C -0.26 -4.65 6.13 -105.07 -0.64 -5.29 16 17 C 0.11 1.73 11.87 -16.94 -0.20 1.53 16 18 N -0.30 -4.55 10.95 30.88 0.34 -4.21 16 19 N -0.32 -4.59 2.94 -6.50 -0.02 -4.61 16 20 C 0.14 1.71 5.97 -83.60 -0.50 1.22 16 21 C -0.11 -1.11 8.42 -39.40 -0.33 -1.44 16 22 C -0.11 -0.83 10.04 -39.61 -0.40 -1.22 16 23 C -0.11 -0.76 10.04 -39.55 -0.40 -1.16 16 24 C -0.11 -0.87 9.71 -39.61 -0.38 -1.26 16 25 C -0.07 -0.68 5.90 -104.44 -0.62 -1.30 16 26 C -0.11 -1.15 9.19 36.00 0.33 -0.82 16 27 C 0.16 2.43 6.86 -81.45 -0.56 1.87 16 28 C -0.11 -1.34 9.58 36.01 0.35 -1.00 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.71 6.06 -51.93 -0.31 0.40 16 31 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.20 2.83 8.06 -52.49 -0.42 2.40 16 36 H 0.13 1.20 7.05 -52.49 -0.37 0.83 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 42 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.72 5.65 -51.93 -0.29 0.43 16 45 H 0.11 1.63 6.32 -51.93 -0.33 1.30 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -31.49 370.04 -8.64 -40.13 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.09 Total: 3.19 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.43 Total: -10.84 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.94 Total: -33.24 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.62 Total: -20.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.49 -8.64 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188108478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.174 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds