Wall clock time and date at job start Tue Mar 31 2020 15:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47521 * 2 1 4 4 H 1.09000 * 109.47234 * 55.00007 * 3 2 1 5 5 C 1.50701 * 109.47461 * 175.00129 * 3 2 1 6 6 H 1.07998 * 120.00184 * 120.00224 * 5 3 2 7 7 C 1.37878 * 119.99758 * 299.99816 * 5 3 2 8 8 N 1.31513 * 120.00101 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99709 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47011 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46767 * 120.00177 * 9 7 5 12 12 H 1.48500 * 109.47174 * 240.00153 * 9 7 5 13 13 O 1.45200 * 109.47125 * 295.00308 * 3 2 1 14 14 C 1.34762 * 116.99970 * 89.99537 * 13 3 2 15 15 O 1.21530 * 119.99892 * 0.02562 * 14 13 3 16 16 C 1.47264 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.41385 * 126.42242 * 0.03115 * 16 14 13 18 18 N 1.30456 * 108.05848 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.93955 * 0.02562 * 18 17 16 20 20 C 1.40146 * 125.76315 * 179.97438 * 19 18 17 21 21 C 1.38863 * 120.06786 * 127.85471 * 20 19 18 22 22 C 1.38102 * 119.92857 * 179.74298 * 21 20 19 23 23 C 1.38297 * 120.07058 * 0.52716 * 22 21 20 24 24 C 1.38260 * 120.13519 * 359.72656 * 23 22 21 25 25 C 1.38139 * 120.06567 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.03477 * 180.02562 * 25 24 23 27 27 C 1.34506 * 108.47100 * 359.72491 * 19 18 17 28 28 C 1.50703 * 126.31173 * 180.26973 * 27 19 18 29 29 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47292 * 59.99597 * 1 2 3 31 31 H 1.09006 * 109.46860 * 299.99727 * 1 2 3 32 32 H 1.09000 * 109.47292 * 120.00403 * 2 1 3 33 33 H 1.09000 * 109.47157 * 239.99940 * 2 1 3 34 34 H 0.97001 * 120.00053 * 179.97438 * 8 7 5 35 35 H 1.08001 * 125.97424 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.03688 * 359.97438 * 21 20 19 37 37 H 1.08009 * 119.96280 * 180.23166 * 22 21 20 38 38 H 1.07997 * 119.93565 * 179.70096 * 23 22 21 39 39 H 1.07998 * 119.96515 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.47321 * 273.39411 * 26 25 24 41 41 H 1.09003 * 109.47630 * 33.39025 * 26 25 24 42 42 H 1.08995 * 109.47585 * 153.39331 * 26 25 24 43 43 H 1.08997 * 109.47186 * 273.78136 * 28 27 19 44 44 H 1.09000 * 109.47089 * 33.77722 * 28 27 19 45 45 H 1.09002 * 109.47184 * 153.77933 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8799 1.3811 10 1 6.5988 1.5451 0.1935 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5191 1.4626 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2275 2.7403 -0.2594 16 6 0.0134 3.4093 -2.4798 17 6 0.7091 3.4807 -3.7085 18 7 -0.0183 4.1675 -4.5458 19 7 -1.1970 4.5640 -3.9041 20 6 -2.2284 5.3189 -4.4789 21 6 -3.5398 4.8664 -4.4164 22 6 -4.5546 5.6152 -4.9792 23 6 -4.2646 6.8092 -5.6140 24 6 -2.9593 7.2597 -5.6825 25 6 -1.9405 6.5178 -5.1170 26 6 -0.5180 7.0098 -5.1916 27 6 -1.1753 4.0935 -2.6442 28 6 -2.2485 4.2811 -1.6029 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0619 2.9495 35 1 1.6741 3.0432 -3.9176 36 1 -3.7663 3.9318 -3.9250 37 1 -5.5752 5.2656 -4.9276 38 1 -5.0593 7.3906 -6.0576 39 1 -2.7359 8.1923 -6.1793 40 1 -0.0668 6.6766 -6.1262 41 1 -0.5077 8.0990 -5.1513 42 1 0.0494 6.6098 -4.3513 43 1 -2.0880 5.2249 -1.0818 44 1 -3.2253 4.2945 -2.0863 45 1 -2.2082 3.4597 -0.8876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188108478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:19 Heat of formation + Delta-G solvation = -6.254086 kcal Electronic energy + Delta-G solvation = -27715.024413 eV Core-core repulsion = 23891.492923 eV Total energy + Delta-G solvation = -3823.531491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96046 -40.99823 -40.08248 -37.49021 -35.47842 -34.82800 -34.09509 -33.33639 -32.85748 -30.56858 -29.41082 -28.58622 -27.81593 -25.50884 -24.58881 -23.71525 -23.10047 -22.02028 -21.23148 -20.66838 -19.12928 -18.63580 -17.76295 -17.34542 -17.19318 -16.78173 -16.69920 -16.30826 -15.94874 -15.32170 -15.04706 -14.84532 -14.71901 -14.69745 -14.37729 -14.15136 -13.89744 -13.83624 -13.46198 -13.32572 -13.32069 -13.26837 -13.06399 -12.98629 -12.79377 -12.53600 -12.40920 -12.25906 -12.11260 -11.97467 -11.71327 -11.39222 -11.16639 -11.01272 -10.77053 -10.49533 -10.06958 -9.84845 -9.47639 -8.24744 -6.40529 -0.23453 0.27038 0.45956 0.97774 1.11178 1.43160 1.43342 1.57340 2.13700 2.21780 2.45751 2.62400 3.04947 3.40176 3.57584 3.71459 3.78516 3.82812 4.06166 4.08318 4.30891 4.36829 4.41417 4.42543 4.44183 4.48486 4.51868 4.61138 4.62192 4.66395 4.78690 4.86600 4.89574 4.99695 5.11436 5.13386 5.21137 5.26612 5.31951 5.40096 5.44867 5.45349 5.55732 5.70176 5.71568 6.01731 6.04731 6.18006 6.33825 6.65036 7.09395 7.31800 8.82357 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002749 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.344828 B =10183.715936 C =10918.425728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.359 6.359 14 C 0.531 3.469 15 O -0.543 6.543 16 C -0.297 4.297 17 C 0.106 3.894 18 N -0.301 5.301 19 N -0.308 5.308 20 C 0.100 3.900 21 C -0.121 4.121 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.109 4.109 25 C -0.081 4.081 26 C -0.109 4.109 27 C 0.171 3.829 28 C -0.102 4.102 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.212 0.788 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 13.289 -16.184 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.197 1.197 13 O -0.275 6.275 14 C 0.378 3.622 15 O -0.436 6.436 16 C -0.310 4.310 17 C -0.082 4.082 18 N -0.118 5.118 19 N -0.081 5.081 20 C 0.011 3.989 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.082 4.082 26 C -0.165 4.165 27 C 0.040 3.960 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.152 0.848 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.145 13.694 -16.953 27.728 hybrid contribution 1.370 -0.829 1.467 2.171 sum -15.775 12.865 -15.486 25.577 Atomic orbital electron populations 1.21691 0.96254 1.00424 1.00136 1.21856 0.94527 0.98108 1.02196 1.20366 0.94417 0.89217 0.78532 0.97313 1.21355 0.90575 1.39696 1.06792 0.91751 1.25767 1.04059 0.93971 0.94403 1.70017 1.37248 1.38050 1.09886 0.85193 0.77960 0.78287 0.78314 1.18916 1.20188 1.19669 1.86500 1.35215 1.63255 1.42570 1.20215 0.79679 0.75501 0.86845 1.90705 1.55898 1.60838 1.36169 1.19255 0.99736 1.16380 0.95582 1.24517 0.99885 0.94489 0.89351 1.77323 0.94211 1.19434 1.20817 1.45599 1.15195 1.39720 1.07632 1.17711 0.85725 0.92312 1.03107 1.21336 0.90625 1.01019 1.01156 1.21407 0.99697 0.94644 0.96670 1.21733 0.97034 0.95934 0.96943 1.21321 0.91871 1.00529 0.98956 1.20103 0.97960 0.92407 0.97752 1.20728 0.91588 1.01983 1.02240 1.21858 0.95845 0.91504 0.86791 1.20889 0.94515 1.05290 0.95245 0.92194 0.94673 0.94237 0.89512 0.93807 0.92078 0.77135 0.84848 0.81987 0.81796 0.82541 0.90520 0.89237 0.94194 0.88554 0.87814 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.56 71.98 0.62 -5.12 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.47 16 3 C 0.23 12.69 2.25 29.85 0.07 12.76 16 4 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 5 C -0.55 -31.57 8.90 25.60 0.23 -31.35 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.77 11.29 21.45 0.24 -52.52 16 9 Si 0.98 43.57 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 O -0.36 -18.04 9.65 -56.73 -0.55 -18.59 16 14 C 0.53 23.94 6.40 70.20 0.45 24.39 16 15 O -0.54 -25.94 11.96 19.74 0.24 -25.70 16 16 C -0.30 -10.99 6.13 -20.15 -0.12 -11.12 16 17 C 0.11 3.50 11.87 85.67 1.02 4.52 16 18 N -0.30 -9.44 10.95 -56.21 -0.62 -10.06 16 19 N -0.31 -8.79 2.94 -174.47 -0.51 -9.31 16 20 C 0.10 2.28 5.97 38.10 0.23 2.51 16 21 C -0.12 -2.09 8.42 22.39 0.19 -1.90 16 22 C -0.11 -1.15 10.04 22.25 0.22 -0.93 16 23 C -0.10 -0.90 10.04 22.29 0.22 -0.68 16 24 C -0.11 -1.34 9.71 22.25 0.22 -1.13 16 25 C -0.08 -1.56 5.90 -19.75 -0.12 -1.67 16 26 C -0.11 -2.15 9.19 71.24 0.65 -1.50 16 27 C 0.17 5.30 6.86 42.13 0.29 5.59 16 28 C -0.10 -2.56 9.58 71.24 0.68 -1.88 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.03 1.53 6.06 -2.39 -0.01 1.52 16 31 H 0.04 1.85 7.79 -2.38 -0.02 1.83 16 32 H 0.09 4.84 5.95 -2.39 -0.01 4.83 16 33 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.21 6.24 8.06 -2.91 -0.02 6.22 16 36 H 0.13 2.17 7.05 -2.91 -0.02 2.15 16 37 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 39 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.09 1.31 8.11 -2.39 -0.02 1.29 16 42 H 0.04 1.02 6.78 -2.39 -0.02 1.00 16 43 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.10 1.91 5.65 -2.39 -0.01 1.90 16 45 H 0.09 2.79 6.32 -2.39 -0.02 2.77 16 Total: -1.00 -71.46 370.04 7.29 -64.16 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.01 Total: 18.97 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 5.46 Total: -12.54 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -0.89 Total: -71.89 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.31 Total: -44.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -71.46 7.29 -64.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188108478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.907 kcal (2) G-P(sol) polarization free energy of solvation -71.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds