Wall clock time and date at job start Tue Mar 31 2020 15:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 H 1.09008 * 109.47101 * 304.99610 * 3 2 1 5 5 C 1.50703 * 109.47348 * 185.00028 * 3 2 1 6 6 H 1.08001 * 120.00392 * 239.99941 * 5 3 2 7 7 C 1.37883 * 119.99908 * 59.99228 * 5 3 2 8 8 N 1.31508 * 119.99870 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99783 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47049 * 60.00316 * 9 7 5 11 11 H 1.48503 * 109.46931 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47111 * 300.00385 * 9 7 5 13 13 O 1.45196 * 109.47656 * 64.99621 * 3 2 1 14 14 C 1.34762 * 117.00027 * 270.00518 * 13 3 2 15 15 O 1.21520 * 119.99951 * 359.97438 * 14 13 3 16 16 C 1.47265 * 119.99707 * 179.71965 * 14 13 3 17 17 C 1.41386 * 126.42475 * 0.30201 * 16 14 13 18 18 N 1.30451 * 108.05745 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.93890 * 359.97438 * 18 17 16 20 20 C 1.40153 * 125.75820 * 179.97438 * 19 18 17 21 21 C 1.38871 * 120.06427 * 127.85989 * 20 19 18 22 22 C 1.38091 * 119.93091 * 179.79107 * 21 20 19 23 23 C 1.38304 * 120.07071 * 0.46136 * 22 21 20 24 24 C 1.38262 * 120.13157 * 359.79111 * 23 22 21 25 25 C 1.38139 * 120.06950 * 359.97438 * 24 23 22 26 26 C 1.50702 * 120.03600 * 180.02562 * 25 24 23 27 27 C 1.34502 * 108.47478 * 359.73040 * 19 18 17 28 28 C 1.50705 * 126.30996 * 180.27077 * 27 19 18 29 29 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47221 * 300.00467 * 1 2 3 31 31 H 1.09007 * 109.46837 * 60.00427 * 1 2 3 32 32 H 1.09001 * 109.47674 * 239.99912 * 2 1 3 33 33 H 1.09002 * 109.47539 * 119.99651 * 2 1 3 34 34 H 0.97004 * 119.99544 * 179.97438 * 8 7 5 35 35 H 1.08002 * 125.96947 * 359.95959 * 17 16 14 36 36 H 1.08000 * 120.03383 * 0.02562 * 21 20 19 37 37 H 1.08004 * 119.96964 * 180.23117 * 22 21 20 38 38 H 1.07993 * 119.93616 * 179.76965 * 23 22 21 39 39 H 1.08002 * 119.96609 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.46957 * 273.41069 * 26 25 24 41 41 H 1.08997 * 109.47009 * 33.41099 * 26 25 24 42 42 H 1.08996 * 109.47077 * 153.41005 * 26 25 24 43 43 H 1.08997 * 109.47035 * 273.78263 * 28 27 19 44 44 H 1.08997 * 109.46973 * 33.79120 * 28 27 19 45 45 H 1.09007 * 109.46728 * 153.78753 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1473 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8801 -1.3811 10 1 6.5967 0.1454 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5005 2.2800 -1.3808 13 8 1.6558 2.0918 1.2406 14 6 0.4680 2.7280 1.2558 15 8 -0.2276 2.7402 0.2594 16 6 0.0103 3.4037 2.4817 17 6 0.7059 3.4750 3.7106 18 7 -0.0242 4.1569 4.5495 19 7 -1.2046 4.5500 3.9089 20 6 -2.2394 5.2986 4.4860 21 6 -2.7064 6.4433 3.8535 22 6 -3.7291 7.1763 4.4224 23 6 -4.2817 6.7769 5.6257 24 6 -3.8153 5.6406 6.2605 25 6 -2.7958 4.9004 5.6940 26 6 -2.2884 3.6617 6.3862 27 6 -1.1758 4.0929 2.6443 28 6 -2.2429 4.2921 1.5988 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0606 -2.9501 35 1 1.6726 3.0407 3.9184 36 1 -2.2728 6.7577 2.9157 37 1 -4.0953 8.0646 3.9291 38 1 -5.0789 7.3539 6.0705 39 1 -4.2485 5.3314 7.2002 40 1 -1.5152 3.9372 7.1034 41 1 -3.1117 3.1745 6.9087 42 1 -1.8715 2.9775 5.6473 43 1 -2.9953 3.5093 1.6940 44 1 -2.7117 5.2660 1.7393 45 1 -1.7930 4.2451 0.6070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188108506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:25 Heat of formation + Delta-G solvation = 9.123454 kcal Electronic energy + Delta-G solvation = -27720.153360 eV Core-core repulsion = 23897.288690 eV Total energy + Delta-G solvation = -3822.864670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80442 -39.59418 -38.95832 -35.64647 -33.95954 -33.39108 -33.25373 -31.84326 -31.28456 -29.63724 -27.83106 -27.07242 -26.94383 -23.97360 -23.12698 -22.47494 -22.12962 -20.60454 -19.84036 -19.16812 -17.80291 -16.76830 -16.39775 -16.28962 -15.99455 -15.30690 -15.22266 -14.86704 -14.48333 -14.25446 -14.18099 -13.85676 -13.62052 -13.19810 -12.94321 -12.90699 -12.76221 -12.57697 -12.41216 -12.13635 -12.04968 -11.73826 -11.52943 -11.41917 -11.30289 -11.12597 -10.90981 -10.77755 -10.59977 -10.24513 -10.02324 -9.72520 -9.53108 -9.28327 -9.20274 -8.94632 -8.74469 -8.47400 -8.38096 -6.14274 -4.20774 0.61327 0.91261 1.61443 2.18629 2.29844 3.24655 3.29204 3.32681 3.35305 3.79584 3.84529 4.36198 4.39869 4.42312 4.49750 4.61248 4.84100 4.87697 4.91060 5.11536 5.17696 5.24194 5.33722 5.43881 5.45123 5.46996 5.51073 5.72885 5.88536 5.92352 5.99719 6.03593 6.10345 6.16145 6.29529 6.36897 6.37420 6.48880 6.57980 6.94693 7.00052 7.03804 7.23479 7.33654 7.54065 7.66902 7.80037 8.01813 8.21851 8.72677 8.98077 9.44267 10.92492 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.002669 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.369160 B =10487.602362 C =10682.074736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.351 6.351 14 C 0.533 3.467 15 O -0.524 6.524 16 C -0.262 4.262 17 C 0.109 3.891 18 N -0.296 5.296 19 N -0.321 5.321 20 C 0.143 3.857 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.065 4.065 26 C -0.112 4.112 27 C 0.159 3.841 28 C -0.106 4.106 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.203 0.797 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.733 10.590 14.771 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.267 6.267 14 C 0.378 3.622 15 O -0.415 6.415 16 C -0.274 4.274 17 C -0.080 4.080 18 N -0.112 5.112 19 N -0.096 5.096 20 C 0.053 3.947 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.067 4.067 26 C -0.168 4.168 27 C 0.031 3.969 28 C -0.164 4.164 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.997 10.955 15.501 24.823 hybrid contribution 1.090 -0.398 -1.026 1.548 sum -14.908 10.557 14.475 23.307 Atomic orbital electron populations 1.21849 0.98392 0.98853 1.00817 1.22013 0.92644 0.99409 1.03259 1.20648 0.94846 0.88688 0.78668 0.93473 1.21016 0.89755 1.38839 1.06186 0.91384 1.24871 0.99112 0.94831 0.95107 1.69882 1.35392 1.37899 1.09461 0.86361 0.84057 0.78454 0.77422 1.19957 1.21096 1.20033 1.86519 1.33627 1.62526 1.43983 1.19694 0.80708 0.76038 0.85755 1.90725 1.55934 1.59591 1.35295 1.19424 0.97666 1.14077 0.96248 1.24375 0.99401 0.94258 0.89938 1.77366 0.93194 1.19809 1.20865 1.45432 1.14688 1.41409 1.08088 1.17257 0.89665 0.92588 0.95171 1.21185 0.98287 0.92865 1.01047 1.21010 0.96137 0.99854 0.95960 1.21267 0.99778 0.96617 0.95247 1.20983 0.96430 0.95216 1.00201 1.19930 0.95290 0.97553 0.93936 1.20773 1.01210 0.94160 1.00705 1.21570 0.96204 0.93134 0.85988 1.20849 0.95472 1.02455 0.97587 0.95010 0.94830 0.92824 0.87430 0.94034 0.92399 0.78076 0.84976 0.84943 0.85297 0.85052 0.90201 0.91420 0.91272 0.89540 0.90913 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.38 7.16 -51.92 -0.37 1.01 16 5 C -0.52 -14.52 8.90 -34.44 -0.31 -14.82 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.06 11.29 55.43 0.63 -24.44 16 9 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.35 -8.38 9.65 -40.66 -0.39 -8.77 16 14 C 0.53 11.44 6.40 34.40 0.22 11.66 16 15 O -0.52 -11.87 11.96 -19.28 -0.23 -12.10 16 16 C -0.26 -4.65 6.13 -105.07 -0.64 -5.30 16 17 C 0.11 1.73 11.87 -16.94 -0.20 1.53 16 18 N -0.30 -4.55 10.95 30.88 0.34 -4.21 16 19 N -0.32 -4.59 2.94 -6.50 -0.02 -4.61 16 20 C 0.14 1.71 5.97 -83.60 -0.50 1.22 16 21 C -0.11 -1.12 8.42 -39.40 -0.33 -1.45 16 22 C -0.11 -0.83 10.04 -39.61 -0.40 -1.23 16 23 C -0.11 -0.76 10.04 -39.55 -0.40 -1.16 16 24 C -0.11 -0.87 9.71 -39.61 -0.38 -1.25 16 25 C -0.07 -0.68 5.90 -104.44 -0.62 -1.30 16 26 C -0.11 -1.13 9.19 36.01 0.33 -0.80 16 27 C 0.16 2.43 6.86 -81.45 -0.56 1.87 16 28 C -0.11 -1.34 9.58 36.01 0.35 -1.00 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 31 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 35 H 0.20 2.83 8.06 -52.49 -0.42 2.40 16 36 H 0.13 1.22 7.05 -52.49 -0.37 0.85 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 42 H 0.07 0.86 6.78 -51.93 -0.35 0.50 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.73 5.65 -51.93 -0.29 0.43 16 45 H 0.11 1.64 6.32 -51.93 -0.33 1.32 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -31.46 370.04 -8.64 -40.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.09 Total: 3.23 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.43 Total: -10.85 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.94 Total: -33.26 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.62 Total: -20.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.46 -8.64 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188108506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.227 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds